Commit graph

10858 commits

Author SHA1 Message Date
Omar Padron
56cb691fcc fix multiple issues with the docker images (#9718)
- fixed an issue where some undesirable parts of
   the spack source tree were being copied into
   the image context.

 - added a workaround for a tty ioctl warning on
   ubuntu

 - adjusted how the main images are built so that
   `RUN spack ...` works automatically for child
   images that base themselves on them.
2018-12-20 11:11:55 -08:00
Zack Galbreath
b90f619037 Performance improvements for CDash reporter
* Record build output as an array of lines rather than concatenating to a
  single large string.
* Use string.find to avoid running re.search on every line of output.
2018-12-20 09:23:08 -08:00
Zack Galbreath
6355ee208c Include accurate build time in CDash report 2018-12-20 09:23:08 -08:00
Zack Galbreath
8d0872083c Report current git commit of Spack to CDash
When using the CDash reporter, upload a Update.xml file that
indicates the hash of Spack's current git commit.
2018-12-20 09:23:08 -08:00
Scott Wittenburg
7217b4a4b9 Make sure to urlencode cdash submit parameters 2018-12-20 09:23:08 -08:00
Zack Galbreath
aed9a532c6 Get buildId from CDash at submit time
Pass extra data when submitting to CDash.  If CDash responds with a buildId,
construct and display helpful URL that links to the uploaded report.
2018-12-20 09:23:08 -08:00
Zack Galbreath
738d2bd77a Allow more customization for CDash reporter
Add new command line arguments to `spack install` that allow users
to set the build name, site name, and track in their CDash report.
2018-12-20 09:23:08 -08:00
Zack Galbreath
0bae6626a4 Avoid UnboundLocalError
Make sure cdash_phase is defined before referring to it.
2018-12-20 09:23:08 -08:00
jthies
9110c727bb packages/phist: add maintainer (#10162) 2018-12-20 13:23:35 +01:00
Greg Sjaardema
93c491f729 CGNS: Allow use of git branch versions (#10156)
* CGNS: Allow use of git branch versions

Add ability to use git `master` and `develop` branches of the CGNS library.  The `seacas` package sometimes needs to use the `master` or `develop` branch due to some new changes to the parallel I/O implementation in CGNS which has not yet been released.

* CGNS: Reorder to put newest version on top

Based on review comments, place newest version (develop) first in list.
2018-12-19 20:02:24 -06:00
Todd Gamblin
207c37759c env: all commands that disambiguate specs should be env-aware
- some commands were missed in the rollout of spack environments

- this makes all commands that need to disambiguate specs restrict the
  disambiguation to installed packages in the active environment, as
  users would expect
2018-12-19 17:49:51 -08:00
Mark W. Krentel
84b33523ec dyninst: patch to build dyninst with older gcc (#10160)
* dyninst: patch to build dyninst with older gcc

Add 'v9.3.2-auto.patch'.  This patch changes some 'auto t: type' usage
to the older but equivalent 'type.begin()'.  This allows building
dyninst 9.3.2 with gcc 4.4 which doesn't support the newer syntax.
This patch is harmless with newer gcc.

* Fix typo in patch.  (My bad for sloppy cut-and-paste.)

* Restrict the patch to gcc 4.7 and earlier.  gcc 4.8 supports the newer
usage and thus doesn't need the patch.
2018-12-19 17:24:43 -08:00
Michael Kuhn
84c547cf6e sqlite: add 3.26.0 (#10138) 2018-12-19 17:07:03 -06:00
Owen Solberg
6b1b9031ea updated checksum for kallisto (#10158) 2018-12-19 17:06:33 -06:00
Michael Kuhn
67ab73d381 fetch_strategy: improve GitFetchStrategy (#10153)
Currently, only the Git repsository's URL shows up in the `spack info`
output, which makes it hard to distinguish different versions:
```
Safe versions:
    develop    [git] https://github.com/LLNL/H5Z-ZFP.git
    0.8.0      [git] https://github.com/LLNL/H5Z-ZFP.git
    0.7.0      [git] https://github.com/LLNL/H5Z-ZFP.git
```

This change adds additional information as shown when cloning a Git
repository:
```
Safe versions:
    develop    [git] https://github.com/LLNL/H5Z-ZFP.git on branch master
    0.8.0      [git] https://github.com/LLNL/H5Z-ZFP.git at commit af165c4
    0.7.0      [git] https://github.com/LLNL/H5Z-ZFP.git at commit 58ac811
```
2018-12-19 14:33:58 -08:00
jthies
5f3d9a4076 phist tag 1.7.5 was moved (#10155) 2018-12-19 13:36:49 -06:00
sknigh
5adec7e491 Updated Dakota to 6.9 (#10157)
* Updated Dakota to 6.9

* Change comment wording
2018-12-19 13:03:14 -06:00
Adam J. Stewart
adfbe71b1b
Add python bindings to libxslt (#10149) 2018-12-19 11:39:19 -06:00
Adam J. Stewart
654360d2ad
Add missing libiconv dependency to libxml2 (#10148) 2018-12-19 11:38:14 -06:00
Adam J. Stewart
0fcca9f422
Add list_url to docbook-xml (#10146) 2018-12-19 11:37:54 -06:00
Adam J. Stewart
e19e176e67
Add latest version of docbook-xsl (#10147) 2018-12-19 11:37:35 -06:00
Adam J. Stewart
ed0ca18c3c
Restrict patch to oldest version of libbsd (#10145) 2018-12-19 11:37:11 -06:00
Satish Balay
c1e562f333
PETSc: add version 3.10.3 (#10154) 2018-12-19 10:46:02 -06:00
Neil Flood
a6e2f1a96a mapserver: new package (#10067) 2018-12-19 10:04:25 +01:00
Massimiliano Culpo
e057500009
Added labels in github issue templates (#10128) 2018-12-19 09:56:26 +01:00
Adam J. Stewart
c1a99bf8ec
Add additional info to MesonPackage docs (#10133)
* Add additional info to MesonPackage docs

* No Pygments lexer for Meson code, default to none
2018-12-18 21:51:42 -06:00
Elsa Gonsiorowski, PhD
b091fcdb8e fix for mpifileutils package (#10142)
* proper include & linking of libarchive

* due to linux headers, mfu can't build on mac

* hard code deps in configure line

rather than relying on pkg-config

* +xattr during config

* must also link the lib

* find mfu.h

* long lines
2018-12-18 21:51:24 -06:00
Dave
b27f81ac00 WarpX: Added dependency on fftw when +psatd (#10144) 2018-12-18 20:11:08 -06:00
Matthias Wolf
22d9938560 flatbuffers: add 1.10.0 (#10137)
Also unpin the version from the arrow package.
2018-12-18 10:53:02 -06:00
Adam J. Stewart
f8c650b9c4 Add pdf variant to cairo (#10135) 2018-12-18 16:39:36 +01:00
Justin Stanley
59d7854b89 clp: add build_directory, remove old hack (#10112)
* clp: add build_directory, remove old hack

* clp: use spack-build for building
2018-12-18 08:36:40 -06:00
Adam J. Stewart
d4b5fc141c
Add latest version of libxkbcommon (#10134) 2018-12-17 19:27:58 -06:00
Alberto Chiusole
a41571a1b6 Add variant to ecflow to choose whether to use static boost libraries. (#9933)
When this variant is set, it requires boost to be built with the +pic variant.
2018-12-17 19:23:53 -06:00
David Hows
c70ea22c6f Add thread count variant to atlas (#9999)
* Add thread count variant

Atlas automatically configures itself and optimizes to run with a fixed number of threads. This can be overridden during compile by setting a flag and atlas will tune itself to use the specified number, rather than all system CPUs. 

Default value is the existing logic, autoconfigure.

* Fix Linting

* Another lint for longline
2018-12-17 19:12:00 -06:00
Jannek Squar
09d2df690a Add spack package for saga-gis (#10018)
* Add spack package for saga-gis

* Adjusted license header

* Adjust saga-gis package, added fixme comments

* Removed version constraint

* Fixed fixme comment
2018-12-17 19:10:50 -06:00
Matthias Diener
776f99a414 git: add version 2.20.1 (#10130) 2018-12-17 17:36:57 -06:00
Omar Awile
d313291c2d Added RocksDB package (#10084)
* Added rocksdb package

* Fixes based on @tristan0x and @pramodk comments

* Cleanup

* A couple minor fixes based on @adamjstewart 's advice

* Fixed flake8 errors
2018-12-17 17:36:45 -06:00
Adam J. Stewart
c2b546fa97
Add missing gettext dependency to at-spi2-core (#10124) 2018-12-17 14:00:53 -06:00
Todd Gamblin
37954a78ff
Revert "mark: Create new package. (#7069)" (#10131)
This reverts commit 90b34c96d6.
2018-12-17 11:15:32 -08:00
Adam J. Stewart
bcd65906c9
Add latest version of gdk-pixbuf (#10126) 2018-12-17 13:04:40 -06:00
Adam J. Stewart
5964d14936
Add latest version of ghostscript (#10123) 2018-12-17 13:04:16 -06:00
Adam J. Stewart
fe73043170
Add missing libbsd dependency to libxdmcp (#10122) 2018-12-17 13:04:00 -06:00
Adam J. Stewart
9913b3b846
Add latest version of libbsd (#10121) 2018-12-17 13:03:43 -06:00
Adam J. Stewart
2d0ddd5d11
Add help messages to spack gpg subcommands (#10117) 2018-12-17 13:02:51 -06:00
Adam J. Stewart
d5d64bdf3b
spack buildcache: --allow_root -> --allow-root (#10115) 2018-12-17 13:02:28 -06:00
Adam J. Stewart
29f26da04d
Update Spack's Bash completion script (#10114)
* Update Spack's Bash completion script

* spack mirror create options changed
2018-12-17 13:02:09 -06:00
Adam J. Stewart
a8a0aee3f3
Add patch to fix windows.h include in freetype (#10075)
* Add patch to fix windows.h include in freetype

* Fix patch
2018-12-17 13:00:43 -06:00
Mark Olesen
cbedd507cf ENH: fixes and updates for openfoam-com build (#10065)
- previous removal of FOAM_EXT_LIBBIN (ThirdParty) from the environment
  during the build could lead to the system scotch library being found
  instead of the spack installation.

  Avoid this largely cosmetic change to the setting in favour of
  improved build robustness. These modifications will be largely
  superfluous in the 1812 release anyhow.

- Split the patching algorithm into 'regular' and '@:1806' since the
  next versions of openfoam will again need fewer patches.

- Add hook into foamCreateManpage to be used where available
2018-12-17 12:58:09 -06:00
Greg Sjaardema
ccce3b79ab SEACAS: Add preliminary support for seacas package (#9972)
* SEACAS: Add preliminary support for seacas package

* Eliminate leftover from package I copied from.

* And remove another stray line

Sorry, thought I had checked this better...

* SEACAS: Shorten long lines; fixup indentation

* SEACAS: Remove unused os import

* Add PLASMA version 18.11.0 and Lua variant (#9689)

* Add PLASMA 18.11.1 with optional Lua and test for headers

* New versions for a few python modules (#9969)

* py-jupyter-console: Add version 5.2.0

* py-jupyter-core: add version 4.4.0

* py-lxml: add version 4.2.5

* py-zmq: add version 17.1.2

* py-terminado: add version 0.8.1

* py-pexpect: add version 4.6.0

* py-pytables: add version 3.4.4

* SEACAS: Default to mpi on

* SEACAS: Modify to reduce variants

Instead of using an `allpkgs` or explicitly specifying each individual subset,
changed to minimize variants:
 * By default, the exodus and IOSS libraries are built and a few
   executables directly related to the IOSS library.
 * variant `common` defaults to True and builds the "common" seacas
   applications.  This is based on my definition, so there may be
   could be some discussion on what belongs here.
 * variant `legacy` defaults to True and builds the remainder of the
   seacas applications.  These are still used, but mainly in more
   esoteric areas.  Might be better to default to False, but I wanted
   default to just build everything which is what other SEACAS builds
   always do...

Removed the `kokkos` variants for now as I need to do some more
thinking on how best to support this.  Not often used currently,
so shouldn't be an issue.

Cleaned up other issues raised by Adam and found by me.

* SEACAS: Address flake8 issues

* SEACAS: Clean up variant package logic

Fixed package variant logic.
Consolidated some other variant handling logic
Other minor refactors for hopefully better readability

* SEACAS: Fix flake8 error

Missing whitespace around operator fixed.
2018-12-17 12:57:31 -06:00
Ricardo Silva
f979b974a5 GDL: python integration fixes (#9936)
* GDL: python integration fixes

* renamed python-related variants to follow the convention
* building the Python module requires patches currently targetting 0.9.8 othwerwise asking for the Python module *only* builds the Pyhton module
* building the python module also requires patching the vendored (with the GDL) antlr to be built as a shared library

* Typo

Co-Authored-By: rmsds <ricardo.d.silva@gmail.com>

* Rename embed-python variant to embed_python
2018-12-17 12:47:16 -06:00