Commit graph

14215 commits

Author SHA1 Message Date
Chuck Atkins
0e532d324c
adios2: Fix backwards compatibility version logic for FindMPI (#12241) 2019-08-02 15:27:47 -04:00
Tamara Dahlgren
574c13837f
packages: Add autotools dependencies to bolt (#12246)
Fixes #12060 (per wspear).

This change is needed for minimal container environments.
2019-08-02 12:22:51 -07:00
Patrick Gartung
9cf6aece85
Geant4 data packages: Set the install path name explicitly. (#12244)
* Geant4 data packages: Set the install path name explicitly.

* Use the correct directory name for g4photonevaporation,g4radioactivedecay,g4realsurface
2019-08-02 13:48:35 -05:00
Chris Green
023de09134 mysql package: New versions, add conflicts, cope with use of dtrace. (#11356)
* Add versions 8.0.16, 5.7.26, and 5.6.44
* Update boost dependency for versions 8.0.16, 8.0.15, and 8.0.14
* Update dtrace script when building for versions before 8 as is done
  for the glib package
* Set perl as a build dependency for versions before 8
* cxxstd=17 conflicts with version 8 when server code is built
  (~client_only)
* Add -Wno-deprecated-declarations for cxxstd > 11
* Add -Wno-error=register for cxxstd > 14
2019-08-02 10:51:02 -07:00
Axel Huebl
46f03074ef openPMD-api: Increase ADIOS2 Minimum (#12169)
The minimum required version of ADIOS2 is v2.4.0 .
2019-08-02 15:31:29 +02:00
MikeG
d384025df7 valgrind: added version 3.15.0 (#12239) 2019-08-02 15:10:37 +02:00
Seth R. Johnson
68d78c0dbe Fix py-matplotlib build (#12230) (#12234) 2019-08-01 17:58:06 -05:00
Seth R. Johnson
46027bea13 Fix QT4 build for mac (#10944)
This updates the Spack QT package to enable building qt version 4 on
MacOS. 

This includes the following changes to the qt package:

* add version 4.8.7
* add option to build with or without shared libs
* add options to disable tools, ssl, sql, and freetype support
* add qt4-tools patch when building qt@4+tools
* add option to build as a framework (only available on MacOS)
* replace qt4-el-capitan patch with qt4-mac patch (which includes the
  edits from qt4-el-capitan)
* apply qt4-pcre-include-conflict.patch only for version 4.8.6
  (rather than all 4.x versions)
* apply qt4-gcc-and-webkit.patch for 4.x versions before 4.8.7 and
  create a separate qt4-gcc-and-webkit-487.patch for version 4.8.7
* update patch function for qt@4 on MacOS to update configure
  variables relevant to Spack (e.g. PREFIX)
* add option to build freetype with Spack, as a vendored dependency
  of QT, or not at all (default is to build with Spack)

This includes the following edits outside of the qt package:

* Update MacOS version utility function to return all parts of the
  Mac version (rather than just the first two)
* gettext package: implement "libs"
* python package: add gettext as a dependency
2019-08-01 10:22:35 -07:00
Patrick Gartung
4ff14bd0b2
Buildcache: skip binary string replacement with padding when the new install path is longer than the old install path. (#12227)
* Raise an exception and exit with a meaningful message when binary path substitution fails.

* Skip binary text replacement with padding and issue a warning when the new install path is longer than the old install path.
2019-08-01 12:07:04 -05:00
Ben Bergen
8922c1f666 Add HDF5 variant to Legion package (#12221) 2019-08-01 10:33:29 -06:00
Sajid Ali
e21e10837f modified: var/spack/repos/builtin/packages/blis/package.py (#12225) 2019-08-01 09:37:23 -05:00
Sajid Ali
f30b717744 Add libflame (#12193)
* Add libflame

	new file:   var/spack/repos/builtin/packages/libflame/Makefile_5.1.0.patch
	new file:   var/spack/repos/builtin/packages/libflame/package.py

* 	modified:   var/spack/repos/builtin/packages/libflame/package.py
2019-08-01 09:33:24 -05:00
Adam J. Stewart
61b824580e py-pyqt5: add missing py-enum34 dependency (#12224) 2019-08-01 13:30:35 +02:00
t-karatsu
9b03ab43ed bdw-gc: add variant for Multithreading (#12223) 2019-08-01 13:29:41 +02:00
Mark W. Krentel
e628f1b4eb unzip: fix build for cray back-end
Fixes #12007.

The Cray cc wrappers don't handle the -s flag (strip) cleanly, It's
not essential to strip the binary, so just remove the flag on Cray.

Note: the default build on Cray is for the back end and the unzip
binary won't run on the front end.  To build for FE, use something
like arch=cray-fe-x86_64.
2019-07-31 20:44:40 -07:00
Gregory Lee
2c2abb454c fix mpa package build error with a patch (#12217) 2019-07-31 16:48:06 -05:00
Gregory Lee
162f1338d9 patch launchmon to fix char * conversion error (#12219) 2019-07-31 16:47:35 -05:00
Rémi Lacroix
5c970613b6 Magma: fix prefix (#12220)
`prefix` is not available in `cmake_args` method, use `self.prefix`.
Fixes #12214.
2019-07-31 16:43:47 -05:00
Levi Baber
8ec9ebc92f should not need bin prefix on spack command (#12215) 2019-07-31 12:58:01 -05:00
Todd Gamblin
33701cc355
docs: update tutorial slides for PEARC19 2019-07-31 12:55:59 -05:00
Adam J. Stewart
f7d1df4d3a
Update Package Creation Tutorial for PEARC19 (#12209)
* Update Package Creation Tutorial for PEARC19

* A few remaining fixes

* Fix section link
2019-07-31 12:54:09 -05:00
Matthieu Dorier
65a1db87f8 Preventing jsoncpp from building tests (#11948)
* Preventing jsoncpp from building tests
jsoncpp: making -DJSONCPP_WITH_TESTS=OFF conditioned by self.run_tests
2019-07-31 12:18:25 -05:00
Christoph Junghans
4ea5e177cd
CMake: make ninja verbose as well (#12200) 2019-07-31 08:41:58 -06:00
Ondřej Čertík
7e61527f9e F18: Fix the location to the f18 binary (#12186) 2019-07-31 15:43:08 +02:00
jthies
ae1524821e phist: added version 1.8.0 (#12201) 2019-07-31 15:35:59 +02:00
t-karatsu
b744accaf6 igvtools: fixed query on jdk instead of java (#12195) 2019-07-31 14:49:51 +02:00
Javier Cervantes
a948954886 Print environment name when removing active env (#12198) 2019-07-31 14:40:11 +02:00
Adam J. Stewart
d973fca00e Fix Sphinx deprecation warning when building docs (#12205)
* Fix Sphinx deprecation warning when building docs

* Set minimum required version of Sphinx
2019-07-31 10:23:56 +02:00
Ryan S. Elliott
86ff5baed7 kim-api: added version 2.1.2 (#12189) 2019-07-31 09:13:13 +02:00
t-karatsu
268c806111 genomefinisher: fixed query on jdk instead of java (#12196) 2019-07-31 08:55:56 +02:00
Adam J. Stewart
db2bbbcecf
Add pandas 0.25.0 (#12173) 2019-07-30 17:16:32 -05:00
Adam J. Stewart
59e9541386
Add tables 3.5.2 (#12172) 2019-07-30 17:16:15 -05:00
Adam J. Stewart
60da9303c6
Update numexpr dependency version (#12168) 2019-07-30 17:15:38 -05:00
Adam J. Stewart
70512b8ba2
Add py-matplotlib 3.1.1 (#12164) 2019-07-30 17:15:20 -05:00
Adam J. Stewart
482152e092
Add py-wxpython package (#12163) 2019-07-30 17:13:32 -05:00
Adam J. Stewart
c1c5f58d12
Add py-cairocffi package (#12161) 2019-07-30 17:13:02 -05:00
Adam J. Stewart
b34da4e108
Add SIPPackage base class (#12157) 2019-07-30 17:12:48 -05:00
Adam J. Stewart
f487f87e3e
Add Magics 4.1.0 (#12078) 2019-07-30 17:11:47 -05:00
Adam J. Stewart
e728883c71
Add eccodes 2.13.0 (#12077) 2019-07-30 17:11:29 -05:00
Adam J. Stewart
354ef2f9ca
Allow bsseeker to build with Python 3 (#12075) 2019-07-30 17:11:14 -05:00
Adam J. Stewart
e13bc0212c
Add py-pipits 2.4 (#12074)
* Add py-pipits 2.4

* Flake8 fix
2019-07-30 17:10:57 -05:00
Justin S
175abecc0b mii: new package at 1.0.2 (#12184)
* mii: new package at 1.0.2

* mii: fix improper formatting in description

* mii: add 1.0.3
2019-07-30 16:16:41 -05:00
健美猞猁
544914f34b gromacs: added version 4.5.5 (#12197) 2019-07-30 16:07:07 +02:00
Ben Bergen
73a9d6556e New package: cgdb (#12154) 2019-07-29 17:19:53 -07:00
Hans Pabst
6db873532c LIBXSMM package: add version 1.13 and optional shared libs (#11998)
* Add +shared variant, which builds shared library in addition to the
  static library.
* Install libraries even when specifying the header-only option
  (header-only is just about installing an additional folder).
* An additional make call is not required to build generator
  executables (they are built by default).
* Streamlined help-line of each variant.
2019-07-29 17:14:41 -07:00
Toyohisa Kameyama
5f716b7ffa hpgmp package: Don't add cpu=native on ARM when using gcc 5.x or before (#12034) 2019-07-29 16:53:59 -07:00
Adam J. Stewart
b8b2fa226e CMOR package: add version 3.4.0 (Python3-compatible) (#12076) 2019-07-29 16:12:37 -07:00
Nick Forrington
6e9f51d1d2 Quantum Espresso package: Specify F90 compiler (#12119) 2019-07-29 15:53:39 -07:00
Adam J. Stewart
c9e5de85fd SimulationIO package: add version 9.0.1 (#12079) 2019-07-29 15:40:57 -07:00
Chuck Atkins
f18c9e0ba5 catalyst package: Fix paths used for intermediate code generation (#12082)
Fixes #12065
2019-07-29 15:31:07 -07:00