Commit graph

35840 commits

Author SHA1 Message Date
Harmen Stoppels
209a3bf302 Compiler.default_libc
Some logic to detect what libc the c / cxx compilers use by default,
based on `-dynamic-linker`.

The function `compiler.default_libc()` returns a `Spec` of the form
`glibc@x.y` or `musl@x.y` with the `external_path` property set.

The idea is this can be injected as a dependency.

If we can't run the dynamic linker directly, fall back to `ldd` relative
to the prefix computed from `ld.so.`
2024-04-22 15:18:06 +02:00
Harmen Stoppels
e8c41cdbcb
database.py: stream of json objects forward compat (#43598)
In the future we may transform the database from a single JSON object to
a stream of JSON objects.

This paves the way for constant time writes and constant time rereads
when only O(1) changes are made. Currently both are linear time.

This commit gives just enough forward compat for Spack to produce a
friendly error when we would move to a stream of json objects, and a db
would look like this:

```json
{"database": {"version": "<something newer>"}}
```
2024-04-22 09:43:41 +02:00
Massimiliano Culpo
a450dd31fa
Fix a bug preventing to set platform= on externals (#43758)
closes #43406
2024-04-22 09:15:22 +02:00
Alex Richert
7c1a309453
perl: remove mkdirp from setup_dependent_package (#43733) 2024-04-20 21:34:07 +02:00
Massimiliano Culpo
78b6fa96e5
ci.py: visit all edges (#43761) 2024-04-20 21:29:32 +02:00
Jordan Ogas
1b315a9ede
mpich: add v4.2.1 (#43753) 2024-04-20 19:45:25 +02:00
Harmen Stoppels
82df0e549d
compiler wrapper: prioritize spack store paths in -L, -I, -rpath (#43593)
* compiler wrapper: prioritize spack managed paths in search order

This commit partitions search paths of -L, -I (and -rpath) into three
groups, from highest priority to lowest:

1. Spack managed directories: these include absolute paths such as
   stores and the stage dir, as well as all relative paths since they
   are relative to a Spack owned dir
2. Non-system dirs: these are for externals that live in non-system
   locations
3. System dirs: your typical `/usr/lib` etc.

It's very easy for Spack to known the prefixes it owns, it's much more
difficult to tell system dirs from non-system dirs. Before this commit
Spack tried to distinguish only system and non-system dirs, and failed
for very trivial cases like `/usr/lib/x/..` which comes up often, since
build systems sometimes copy search paths from `gcc -print-search-dirs`.

Potentially this implementation is even faster than the current state of
things, since a loop over paths is replaced with an eval'ed `case ...`.

* Trigger a pipeline

* Revert "Trigger a pipeline"

This reverts commit 5d7fa863de91c5557ef4432c0ea105ed0924a6e8.

* remove redudant return statement
2024-04-20 13:23:37 -04:00
Harmen Stoppels
f5591f9068
ci.py: simplify, and dont warn excessively about externals (#43759) 2024-04-20 15:09:54 +02:00
FrederickDeny
98c08d277d
e4s-alc: add new package (#43750)
* Added e4s-cl@1.0.3

* add e4s-alc package

* removed trailing whitespace
2024-04-19 15:54:23 -06:00
Jordan Galby
facca4e2c8
ccache: 4.9.1 and 4.8.3 (#43748) 2024-04-19 23:46:38 +02:00
Adam J. Stewart
764029bcd1
py-ruff: add v0.4.0 (#43740) 2024-04-19 15:44:19 -06:00
Harmen Stoppels
44cb4eca93
environment.py: fix excessive re-reads (#43746) 2024-04-19 13:39:34 -06:00
Jack Morrison
39888d4df6
libfabric: Add version 1.21.0 (#43735) 2024-04-19 11:09:59 -07:00
Vincent Michaud-Rioux
f68ea49e54
Update py-pennylane + Lightning plugins + few deps (#43706)
* Update PennyLane packages to v0.32.
* Reformat.
* Couple small fixes.
* Fix Lightning cmake_args.
* Couple dep fixes in py-pennylane + plugins.
* Fix scipy condition.
* Add comment on conflicting requirement.
* Update py-pl versions
* Update lightning versions.
* Fix copyright.
* Fix license.
* Update pl-kokkos versions
* run black
* Fix L-Kokkos build and update autoray.
* build step only required for older versions. update autograd
* Fix LK@0.31 kokkos compat issue. Introduce url_for_version.
* Fix few more version bounds.
2024-04-19 11:05:09 -07:00
Olivier Cessenat
78b5e4cdfa
perl-fth: new version 0.529 (#43727) 2024-04-19 10:58:34 -07:00
Micael Oliveira
26515b8871
fms: add two variants (#43734)
* fms: add two variants supporting existing build options.
* Style fixes.
2024-04-19 10:51:58 -07:00
Harmen Stoppels
74640987c7
ruamel yaml: fix quadratic complexity bug (#43745) 2024-04-19 14:33:42 +02:00
Harmen Stoppels
d6154645c7
chai / raja / umpire: compile entire project with hipcc again (#43738) 2024-04-19 11:18:12 +02:00
James Smillie
faed43704b
py-numpy package: enable build on Windows (#43686)
* Add conflicts for some blas implementations that don't build on
  Windows (or with %msvc)
* Need to enclose CC/CXX variables in quotes in case those paths
  have spaces, otherwise Meson runs into errors
* On Windows, Python dependencies now add <prefix>/Scripts to the
  PATH (this is established as a standard in PEP 370)
2024-04-18 16:38:08 -06:00
John W. Parent
6fba31ce34
Windows: Update MSVC + oneAPI detection and integration (#43646)
* Later versions of oneAPI have moved, so update detection to find it
  in both old and new location
* Remove reliance on ONEAPI_ROOT env variable when determining Fortran
  compiler version for %msvc
* When finding a Fortran compiler for MSVC, there was logic enforcing
  a maximum MSVC version for a given oneAPI Fortran version. This
  mapping was out of date and excluding valid combinations, so has
  been removed (the logic now just picks the latest available
  oneAPI Fortran compiler for any given MSVC version).
2024-04-18 21:53:56 +00:00
Olivier Cessenat
112cead00b
keepassxc: new version 2.7.7 (#43729) 2024-04-18 14:54:08 -06:00
John W. Parent
9e2558bd56
Windows: add win-sdk/wgl externals during bootstrapping (#43459)
On Windows, bootstrapping logic now searches for and adds the win-sdk
and wgl packages to the user's top scope as externals if they are not
present.

These packages are generally required to install most packages with
Spack on Windows, and are only available as externals, so it is
assumed that doing this automatically would be useful and avoid
a mandatory manual step for each new Spack instance.

Note this is the first case of bootstrapping logic modifying
configuration other than the bootstrap configuration.
2024-04-18 10:20:04 -07:00
eugeneswalker
019058226f
py-netcdf4 %oneapi: cflags append -Wno-error=int-conversion (#43629) 2024-04-18 10:11:24 -07:00
George Young
ac0040f67d
spaceranger: new manual download package @2.1.1 (#42391)
* spaceranger: new manual download package @2.1.1
* Adding license url

---------

Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2024-04-18 10:11:01 -07:00
wspear
38f341f12d
Added tau@2.33.2 (#43682) 2024-04-18 10:10:18 -07:00
George Young
26ad22743f
cellranger: new manual download package @7.1.0 (#38486)
* cellranger: new manual download package @7.1.0
* cellranger: updating to @7.2.0
* updating website
* Adding license url

---------

Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2024-04-18 10:09:00 -07:00
George Young
46c2b8a565
xeniumranger: new manual download package @1.7.1 (#42389)
* xeniumranger: new manual download package @1.7.1
* Adding license url

---------

Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2024-04-18 10:08:04 -07:00
James Taliaferro
5cbb59f2b8
New package: editorconfig (#43670)
* New package: editorconfig
* remove FIXMEs
* add description for editorconfig
2024-04-18 10:05:15 -07:00
Adam J. Stewart
f29fa1cfdf
CI: remove MXNet (#43704) 2024-04-18 10:04:03 -07:00
Olivier Cessenat
c69951d6e1
gxsview: compiles against system qt and vtk on rhel8 (#43722)
* gxsview: compiles againts system qt and vtk on rhel8
* Update gxsview/package.py for blanks around operator
* Update gxsview/package.py import blank line
* Update gxsview/package.py for style
* Update gxsview/package.py checking vtk version
2024-04-18 10:18:05 -06:00
Adam J. Stewart
f406f27d9c
ML CI: remove extra xgboost (#43709) 2024-04-18 09:08:25 -07:00
Tamara Dahlgren
36ea208e12
Twitter->X: Reflect the name (only) change (#43690) 2024-04-18 08:52:54 -07:00
Kyle Knoepfel
17e0774189
Make sure variable is None if exception is raised. (#43707) 2024-04-18 08:50:15 -07:00
Sam Gillingham
3162c2459d
update py-python-fmask to version 0.5.9 (#43698)
* update py-python-fmask to version 0.5.9
* add gillins and neilflood as maintainers
* remove spaces
* remove blank line
* put maintainers higher
2024-04-18 08:48:15 -07:00
Massimiliano Culpo
7cad6c62a3
Associate condition sets from cli to root node (#43710)
This PR prevents a condition_set from having nodes that are not associated with the corresponding root node through some (transitive) dependencies.
2024-04-18 17:27:12 +02:00
Harmen Stoppels
eb2ddf6fa2 asp.py: do not copy 2024-04-18 15:39:26 +02:00
Harmen Stoppels
2bc2902fed spec.py: early return in __str__ 2024-04-18 15:39:26 +02:00
Mikael Simberg
b362362291
cvise package: add version 2.10.0 and ncurses constraint (#43319) 2024-04-17 13:41:33 -07:00
Rocco Meli
32bb5c7523
mkl interface (#43673) 2024-04-17 16:19:35 -04:00
FrederickDeny
a2b76c68a0
Added e4s-cl@1.0.3 (#43693) 2024-04-17 13:45:36 -06:00
Wouter Deconinck
62132919e1
xrootd: new version 5.6.9 (#43684) 2024-04-17 12:26:52 -07:00
Wouter Deconinck
b06929f6df
xerces-c: new version 3.2.5 (#43687) 2024-04-17 12:24:27 -07:00
Wouter Deconinck
0f33de157b
assimp: new version 5.4.0 (#43689) 2024-04-17 10:21:15 -07:00
Sinan
03a074ebe7
package/npm update (#43692)
* package/npm update
* add conflicts to exclude certain version intervals

---------

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
2024-04-17 10:06:09 -07:00
Adam J. Stewart
4d12b6a4fd
py-shapely: add v2.0.4 (#43702) 2024-04-17 18:51:48 +02:00
Adam J. Stewart
26bb15e1fb
py-sphinx: add v7.3 (#43703) 2024-04-17 18:51:31 +02:00
Bill Williams
1bf92c7881
[Score-P] Make local with-or-without not use "yes" (#43701)
Score-P does not accept "--with-foo=yes", but only "--with-foo" or "--with-foo=some-valid-specific-choice-or-path". This keeps Spack from generating config flags that will cause Score-P to barf.
2024-04-17 09:32:47 -07:00
Todd Gamblin
eefe0b2eec
Improve spack find output in environments (#42334)
This adds some improvements to `spack find` output when in environments based
around some thoughts about what users want to know when they're in an env.

If you're working in an enviroment, you mostly care about:
* What are the roots
* Which ones are installed / not installed
* What's been added that still needs to be concretized

So, this PR adds a couple tweaks to display that information more clearly:

- [x] We now display install status next to every root. You can easily see
      which are installed and which aren't.

- [x] When you run `spack find -l` in an env, the roots now show their concrete
      hash (if they've been concretized). They previously would show `-------`
      (b/c the root spec itself is abstract), but showing the concretized root's
      hash is a lot more useful.

- [x] Newly added/unconcretized specs still show `-------`, which now makes more
      sense, b/c they are not concretized.

- [x] There is a new option, `-r` / `--only-roots` to *only* show env roots if
      you don't want to look at all the installed specs.

- [x] Roots in the installed spec list are now highlighted as bold. This is
      actually an old feature from the first env implementation , but various
      refactors had disabled it inadvertently.
2024-04-17 16:22:05 +00:00
Wouter Deconinck
de6c6f0cd9
py-pyparsing: new version 3.1.2 (#43579) 2024-04-17 07:53:03 -06:00
James Smillie
309d3aa1ec
Python package: fix install of static libs on Windows (#43564) 2024-04-16 16:40:15 -06:00