Commit graph

7647 commits

Author SHA1 Message Date
Massimiliano Culpo
8c3edfd36f test/file_cache.py: ported to pytest (#3429) 2017-03-14 09:07:04 -07:00
Adam J. Stewart
64bd7adefa Fix vim ~gui behavior (#3432) 2017-03-14 07:45:17 -07:00
Adam J. Stewart
5430d45db1 Add latest version of openpyxl and missing dependencies (#3431) 2017-03-14 07:44:46 -07:00
Adam J. Stewart
b203058891 Fix zlib %pgi build (#3436) 2017-03-14 07:43:54 -07:00
Erik Schnetter
415c9398d2 ncurses: Use gawk as awk (#3425) 2017-03-14 07:43:02 -07:00
Todd Gamblin
d11e262b36 Fix from_sourcing_files(): decode json input as utf-8 (#3433) 2017-03-13 15:52:36 -07:00
Erik Schnetter
9121599145 New package pocl (#3413)
* New package pocl

* pocl: Update dependencies, add self-test

* pocl: Don't require LLVM shared libraries

LLVM build fails with shared libraries.

* Add patch

* Update

* Update

* Make build and install work; install test still fails

* Split pocl into pocl proper and pocl-test

* Add debug output

* pocl: Update to 0.14-rc

* pocl: Correct flake8 error

* pocl: Heed code review recommendations

* pocl: Add newline at end of file

* pocl: Correct flake8 error

I don’t want to use an even longer line by putting the whole variant declaration onto a single line, nor do I think that having an overlong line and adding `# noqa` at the end is more readable than splitting a string over three lines.

* pocl: Correct dependency type for libtool
2017-03-12 12:52:18 -05:00
Denis Davydov
0b948da74c gnuplot: fixed broken package and add variants (#3185)
* gnuplot: fix conflict in header via a simple patch; add variants

* gtkplus: fix missing dependency

* wx: fix build on macOS; switch to AutotoolsPackage

* gnuplot: add missing dependencies

* wx: put back parallel build
2017-03-12 09:37:26 -05:00
Erik Schnetter
d8f1446265 julia: New version 0.5.1 (#3418)
* julia: New version 0.5.1

* julia: Define url on a single line
2017-03-11 21:04:44 -06:00
Erik Schnetter
9a14597493 autoconf: Correct m4 dependency declaration (#3415)
* autoconf: Correct m4 dependency declaration

Closes #3406.

* autoconf: Correct m4 dependency type

* autoconf: Update comment
2017-03-11 21:04:18 -06:00
Erik Schnetter
02db630985 hwloc: Disable OpenCL (#2854)
* hwloc: Disable OpenCL

* hwloc: Convert `install` to `configure_args`
2017-03-11 20:59:06 -06:00
Erik Schnetter
41a3957540 libxsmm: Add header-only variant (#3419)
* libxsmm: Add header-only variant

* libxsmm: Implement requestes from code review

* libxsmm: Correct error in previous simplification

* libxsmm: Raise error if `header-only` variant is not supported by version

* libxsmm: Correct flake8 errors
2017-03-11 16:00:47 -06:00
Erik Schnetter
18ac76b320 bison: Declare m4 dependency correctly (#3424)
* bison: Declare m4 dependency correctly

* bison: Declare m4 as run-time dependency
2017-03-11 15:58:57 -06:00
Erik Schnetter
23d4a60639 funhpc: New package (#3421)
* funhpc: New package

* funhpc: Rename development version to “develop”

* funhpc: Try to make flake8 happy

* funhpc: Correct flake8 error
2017-03-11 15:58:09 -06:00
Erik Schnetter
63a8f79980 Correct inconsistency in comment (#3414) 2017-03-11 12:52:08 -06:00
Erik Schnetter
7e3eaba899 hdf5-blosc: Update compiler selection in self-test (#3417) 2017-03-11 12:50:54 -06:00
Erik Schnetter
093ffdfa45 cuda: Allow using unknown compilers (#3416)
* cuda: Allow using unknown compilers

* cuda: Correct flake8 error
2017-03-11 12:42:02 -06:00
Erik Schnetter
b30637e1ce py-yt: New version 3.3.4 (#3420) 2017-03-11 12:39:33 -06:00
Erik Schnetter
48640cf2fa binutils: Add gettext dependency (#3423) 2017-03-11 12:38:51 -06:00
Elsa Gonsiorowski
eef2021d91 pdsh basic package (#3408)
* added basic pdsh package

* need link to actual archive file
2017-03-11 09:12:26 -06:00
Todd Gamblin
e3101808ae Make multimethods work with inheritance. (#3411)
Previously, this would fail with a NoSuchMethodError:

    class Package(object):
        # this is the default implementation
        def some_method(self):
            ...

    class Foo(Package):
        @when('platform=cray')
        def some_method(self):
            ...

        @when('platform=linux')
        def some_method(self):
            ...

This fixes the implementation of `@when` so that the superclass method
will be invoked when no subclass method matches.

Adds tests to ensure this works, as well.
2017-03-11 05:48:36 -08:00
Mario Melara
15f80ed15c Add paths to PKG_CONFIG_PATH to find cray .pc file (#3378)
* Add paths to PKG_CONFIG_PATH to find cray .pc file

Adds two paths: /usr/lib64/pkgconfig and /usr/local/lib64/pkgconfig.

cray pkg-config looks at two different paths which are not included
in PKG_CONFIG_PATH environment variable. This PR addresses #3167.

* Flake8 fixes

* flake8 fix again
2017-03-10 16:29:20 -08:00
scheibelp
e727f56d89 Features/compiler config consistency (#2999)
* default scope for config command is made consistent with cmd/__init__ default

* dont specify a scope when looking for compilers with a matching spec (since compiler concretization is scope-independent)

* config edit should default to platform-specific file only for compilers

* when duplicate compiler specs are detected, the exception raised now points the user to the files where the duplicates appear

* updated error message to emphasize that a spec is duplicated (since multiple specs can reference the same compiler)

* 'spack compilers' is now also broken down into sections by os and target

* Added tests for new compiler methods
2017-03-10 13:58:48 -08:00
Javier
68f5b9adf8 Adding new package: py-lxml (#3403)
* Adding new package: py-lxml

* Adding missing version
2017-03-10 13:18:17 -06:00
Javier
a1e8644f63 Adding new package: py-elasticsearch (#3398)
* Adding new package: py-elasticsearch

* Adding missing dependency
2017-03-10 12:48:41 -06:00
Javier
0c9ddeafe4 Adding new package: py-keras (#3400)
* Adding new package: py-keras (and dependencies)

* Fixing dependencies
2017-03-10 12:48:22 -06:00
Jon Rood
6066526492 Confining CPPFLAGS=-P to only happen for GCC. (#3404) 2017-03-10 12:48:03 -06:00
Javier
22d7f9da40 Adding new package: py-py4j (#3390)
* Adding new package: py-py4j

* Adding missing depedency
2017-03-10 07:30:28 -06:00
Javier
a7f35b3db6 Adding new package: py-joblib (#3399) 2017-03-10 07:30:01 -06:00
Javier
84db03b5a8 Adding new package: vdt (#3396) 2017-03-10 07:08:41 -06:00
Javier
901f044bbf Adding new package: vc (#3397) 2017-03-10 07:08:17 -06:00
Javier
f0fd0156de Adding new package: py-pathos (and dependencies) (#3391)
* Adding new package: py-pathos (and dependencies)

* Fixing required versions
2017-03-09 17:28:32 -06:00
George Hartzell
611df0bebf New gcc uses C++14 mode, this fixes implicit conversion (#3392)
* New gcc uses C++14 mode, this fixes implicit conversion

The issue is described in depth [here][desc].  C++14 no longer
allows implicit conversion from iostream classes to void*.

This patch comes directly from [PR #6][patch].

[desc]: http://stackoverflow.com/questions/38659115/make-fails-with-error-cannot-convert-stdistream-aka-stdbasic-istreamchar
[patch]: https://github.com/agordon/libgtextutils/pull/6

* mend
2017-03-09 17:27:56 -06:00
Javier
ebd5066d07 Adding new package: py-4suite-xml (#3389) 2017-03-09 13:44:37 -06:00
Gregory Lee
604b75c1f9 created elf virtual package and updated dependent packages (#3317)
* created elf virtual package and updated dependent packages
* added `hide_files` context manager to handle moving files.
2017-03-09 10:36:32 -08:00
Erik Schnetter
2ac343e92e cosmomc: New package CosmoMC (#3292)
* cosmomc: New package CosmoMC

* cosmomc: Improve version numbering scheme

* planck-likelihood: New package

* cosmomc: Pacify flake8

* cosmomc: Code cleanup as requested in the review

* cosmomc: Various updates suggested during review

* cosmomc: Limit compiler versions (as documented in the build instructions)

* cosmomc: Correct flake8 error

* cosmomc: Use `libs` instead of `lapack_libs`

* planck-likelihood: Make makefile output more verbose and readable

* planck-likelilhood: Correct order of libraries when calling linker

* cosmomc: Clean up check for suitable compiler

* planck-likelihood: Use modern mechanism to set environment variables
2017-03-09 08:14:13 -06:00
Brian Van Essen
21e913bac5 Updated the spectrum-mpi package to get the right compiler names when (#3381)
we use spectrum.
2017-03-09 08:11:59 -06:00
Michael Kuhn
44b165461a udunits2: Add build dependency on texinfo (#3383) 2017-03-09 08:11:23 -06:00
Michael Kuhn
c1f8fbed34 ncl: Update to 6.4.0 (#3384) 2017-03-09 08:11:06 -06:00
Javier
e8c8e444e8 Fixing checkum of py-coverage v4.3.4 (#3386) 2017-03-09 08:10:45 -06:00
Massimiliano Culpo
f2c1cbdcd3 patch: configure and build out of source fixes #3387 (#3388) 2017-03-09 07:40:05 -06:00
Brian Van Essen
acf95c92a6 Fixes the Elemental and LBANN packages to conform to the new syntax (#3382)
introduced by PR https://github.com/LLNL/spack/pull/1875
2017-03-08 14:32:26 -06:00
healther
bacb60457d Add package py-guiqwt and dependencies (#3334)
* add package py-guiqwt with dependencies

* fixed url

* fixed url2

* Update package.py

* Update package.py
2017-03-08 10:18:57 -06:00
Massimiliano Culpo
f1d66467e3 package.py: packages dump build dependencies in prefix (#3373)
Modifications:
- `dump_packages` copies build dependencies into `$prefix/.spack`, as well as the link/run dependencies that we already copied there.
- fake installs copy dependency packages into `$prefix/.spack` as well
2017-03-07 07:05:45 -08:00
Massimiliano Culpo
c6d9a45f18 test/environment.py: ported to pytest, added a test on separators (#3375) 2017-03-07 07:03:12 -08:00
AP97
3d9cd72e33 Adding farmhash package from google (#3239)
* Adding farmhash package from google
2017-03-07 07:02:08 -08:00
Aidan San
5d1a16805e Added gemmlowp package (#3240) 2017-03-07 07:00:53 -08:00
Hans Pabst
2ae1ebbbe8 LIBXSMM 1.7.1 (#3371)
* Cleanup list of offered versions (only the latest update release of each minor version is kept: 1.4.4, 1.5.2, 1.6.6, 1.7.1); introduced master revision (via Git). Slightly more selective installation of the documentation; copy README.md and LICENSE files to documentation folder. Removed outdated build options (make_args); generally stay with LIBXSMM's defaults (general purpose build). Introduced one build variant ("debug").

* Incorporated comments of PR #3371 (https://github.com/LLNL/spack/pull/3371).

* Fixed flake8 complaints.

* Made the full list of versions available starting with version 1.4 (there are earlier releases, however those have been released before the Spack specification became available; original spec. also started with 1.4).

* Made DBG and TRACE actually two separate arguments.
2017-03-07 06:58:17 -08:00
Erik Schnetter
55e1550a59 openblas: Run tests only when requested (#3370)
The tests fail on some systems (e.g. Comet at SDSC) that impose limits on the number of processes or threads one can run simultaneously on the head node. Thus the tests should not be run by default.
2017-03-05 12:29:02 -06:00
Barry Smith
00d6cb9a8f Fixes veclibfort which was broken by PR1875 (#3368)
Funded-by: IDEAS
Project: IDEAS/xSDK
Thanks-to: Adam J. Stewart
2017-03-05 07:34:38 -06:00