Commit graph

21384 commits

Author SHA1 Message Date
Scott Wittenburg
92bef1da6f
Pipelines: Fix default generated rebuild job script (#24185) 2021-06-08 14:33:45 -06:00
Vanessasaurus
3291be6cb1
singularity: add singularityce fork (#24201)
Since the two packages share a common history, the installation
procedure has been factored into a common base class.

Signed-off-by: vsoch <vsoch@users.noreply.github.com>
2021-06-08 21:31:18 +02:00
Teodor Nikolov
d0fdbc1ab2
[umpire] Fix missing header (#24198) 2021-06-08 21:17:51 +02:00
Adam J. Stewart
92be358582
Python: fix +tkinter+tix support (#23980)
* Tcl: fix TCLLIBPATH

* Fix TCL|TK|TIX_LIBRARY paths

* Fix TCL_LIBRARY, no tcl8.6 subdir

* Don't rely on os.listdirs sorting

For tcl and tk, we also install the source directory, so there are
two init.tcl and tk.tcl locations. We want the one in lib/lib64,
which should come before the one in share.

* Add more patches

* Fix dylib on macOS

* Tk: add smoke tests

* Tix: add smoke test
2021-06-08 12:45:04 -05:00
Massimiliano Culpo
f33c4e7280
ASP-based solver: permit to use virtual specs in environments (#24199)
Extracting specs for the result of a solve has been factored
as a method into the asp.Result class. The method account for
virtual specs being passed as initial requests.
2021-06-08 19:04:49 +02:00
Massimiliano Culpo
e321578bbe
ASP-based solver: reordered low priority optimization criteria (#24184)
Minimizing compiler mismatches in the DAG and preferring newer 
versions of packages are now higher priority than trying to use as 
many default values as possible in multi-valued variants.
2021-06-08 16:10:49 +02:00
Robert Mijakovic
a2e9a1b642
osu-micro-benchmarks: new version 5.7.1 (#23590) 2021-06-08 08:07:20 -06:00
Todd Gamblin
beed6047e8
macOS: add monterey as macOS version 12. (#24192) 2021-06-08 10:07:34 +00:00
Tamara Dahlgren
11fd88ee3c
Update stand-alone tests to use test stage work directory; also added expected ctest output (#24191) 2021-06-08 03:31:40 -06:00
Glenn Johnson
418db4e910
gatk: make r a variant (#24189)
According to the docs, r is needed for plotting, but plotting is
untested. In addition, the specific version requirement of java for gatk
could lead to multiple installations of r being triggered in an
environment. That might cause people to have to be deliberate about
java in a deployment. All in all, it seems that r is better as a
variant for gatk.
2021-06-08 03:08:10 -06:00
Chris Richardson
f231ae97f4
Changes for ufl and basix (#24187) 2021-06-08 03:07:38 -06:00
Tamara Dahlgren
e1bd3ae4db
biobambam2: update stand-alone tests to use test stage work directory (#24111) 2021-06-08 09:30:21 +02:00
Massimiliano Culpo
729d66a3f8
Fix brittle unit-tests on providers (#24186)
These tests were broken by #24176
2021-06-07 22:16:14 +02:00
Michael Kuhn
4d55203ce5
build_systems: Make autotools builds verbose (#24161)
This is also what our other build systems are doing.
2021-06-07 14:05:35 -04:00
Valentin Volkl
2bdeaa1b48
pkgconf: disable check due to missing dependencies (#24168) 2021-06-07 12:01:24 -06:00
Adam J. Stewart
3d0bad465b
Docs: fix missing backtick in Environments docs (#24109) 2021-06-07 19:05:09 +02:00
Valentin Volkl
506d5744aa
delphes: add v3.5.0 (#24101) 2021-06-07 19:04:34 +02:00
Tamara Dahlgren
026cf7aa30
Update stand-alone tests to use test stage work directory (#24110) 2021-06-07 18:11:10 +02:00
Harmen Stoppels
e12b030def
mpich: fix constraints in provides directives (#24176) 2021-06-07 09:16:56 -06:00
Michael Kuhn
057bf434ce
netdata: add v1.31.0 (#24158)
This also adds some missing dependencies for core functionality.
2021-06-07 17:13:49 +02:00
Glenn Johnson
004f86aab7
r-rpostgres: add new package (#22442) 2021-06-07 17:10:46 +02:00
Glenn Johnson
c01730e33b
r-rmariadb: remove no longer needed patch (#24171)
Since PR #22873 was merged, the configure patch for r-rmariadb is no
longer needed. Also added comment regarding configure arguments.
2021-06-07 17:08:43 +02:00
psakievich
1fed008410
Add int64 back for hypre in nalu-wind (#24140)
To concretize the entire exawind environment together we need `hypre` to be built with the same flags for `nalu-wind` and `amr-wind`.  
@jrood-nrel
2021-06-07 07:35:26 -07:00
Chuck Atkins
b0590bf4e8
axl: Don't deprecate v0.3.0 as it's still actively required by veloc (#24179) 2021-06-07 07:35:08 -07:00
arjun-raj-kuppala
c2901ea14a
AMD ROCm release 4.2.0: bump up mivisionx version and add gtk option to opencv (#23881)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2021-06-07 15:31:17 +02:00
Harmen Stoppels
b17046723d
Revert "Bootstrap with -O3 in cmake (#23147)" (#24174)
This reverts commit fef05621a7.
2021-06-07 03:37:22 -06:00
Luca Heltai
f07be01fa8
arborx: enable trilinos 13+ (#24153) 2021-06-06 21:07:31 -06:00
Adam J. Stewart
559db31511
py-radiant-mlhub: add new package (#24167) 2021-06-06 21:04:30 -06:00
Adam J. Stewart
e1d194b9a3
NCCL: add new versions (#24155) 2021-06-06 22:22:21 -04:00
Peter Scheibel
6ed7d40be7
axom: don't require hdf5~shared (#24144) 2021-06-06 22:17:39 -04:00
Luca Heltai
1533c2fade
dealii: add support for arborx (#24154) 2021-06-06 22:16:43 -04:00
Glenn Johnson
986bcef160
darshan-runtime: add SGE scheduler (#24160)
* Set job_id for SGE in darshan-runtime package
* Use a multi value variant for scheduler

Only one scheduler can be selected so make the variant multi valued and
set multi=False.
2021-06-06 19:15:40 -04:00
Adam J. Stewart
09d317c293
py-pystac: add new package (#24166) 2021-06-06 19:11:08 -04:00
Adam J. Stewart
7093fb214f
py-tqdm: add version 4.56.2 (#24165) 2021-06-06 14:46:23 -06:00
Paul
534df5cd68
Add Go 1.16.5 and 1.15.13 (#24170) 2021-06-06 17:43:59 +02:00
Chuck Atkins
6c21d64c50
veloc: The axl dependency had an API change in 0.4.0 that breaks veloc (#24157) 2021-06-05 18:25:20 -06:00
Adam J. Stewart
3db5029a4b
GMT: add v6.2.0 (#24164) 2021-06-05 23:39:02 +00:00
Adam J. Stewart
7449d6950a
Fix git_version on macOS (#24163) 2021-06-05 23:30:28 +00:00
Tom Payerle
9f8e40e95c
hdf-eos5: Fix issue when linking against hdf5+szip (#23411) (#23412)
* hdf-eos5: Fix issue when linking against hdf5+szip (#23411)

Should fix issue #23411 when linking against hdf5+szip

Also fix bug if hdf5 does not depend on zlib

Reluctantly added payerle as a maintainer
2021-06-05 07:44:49 -04:00
Greg Becker
af3ebeeea1
apply default linux prefix inspections to all module sets (#24151) 2021-06-04 21:37:20 -06:00
Axel Huebl
42df61d631
py-warpx: 21.06 (#24152) 2021-06-04 21:50:48 -05:00
Tom Payerle
e741211c09
[py-cvxpy]: Add new version, fix depends_on versions (#24147)
Added version 1.1.13

Fixed versions for dependencies based on README.md for package
In particular:
   * versions 1.1.x require python@3, at least 3.4 and for 1.1.13 at least 3.6
   * py-osqp had been pinned to version 0.4.1, but README.md either shows
        no version restriction, of 0.4.1 and higher
   * @1.1.13 requires at least 1.1.6 of py-scs
   * I am assuming since 1.1.x is python@3 only, py-six no longer required
        (it was not explicitly showing up in README.md for these versions)
2021-06-04 17:55:26 -06:00
Manuela Kuhn
4cc27f58db
tk: fix url for patch (#24146) 2021-06-04 18:18:07 -05:00
Michael Kuhn
7d3a3af621
main, modules: fix module roots not being found (#24135)
Since the module roots were removed from the config file,
`--print-shell-vars` cannot find the module roots anymore. Fix it by
using the new `root_path` function. Moreover, the roots for lmod and
modules seems to have been flipped by accident.
2021-06-04 15:33:18 -07:00
Jen Herting
ff73ac6e9a
New package: py-python3-xlib (#24139)
* [py-python3-xlib] created template

* [py-python3-xlib] requires python3

* [py-python3-xlib] Final cleanup

- added homepage
- added description
- removed fixmes

* [py-python3-xlib] added homepage

* [py-python3-xlib] removing homepage entirely
2021-06-04 20:28:14 +00:00
Tamara Dahlgren
5c37db5db3
libceed: Update the hip-related variant (#24142) 2021-06-04 12:45:10 -07:00
Joe Heaton
13978d68ea
enable std c++14 (#24127) 2021-06-04 18:47:32 +00:00
arjun-raj-kuppala
54b9fe219b
opencv: Adding gtk variant (#23937) 2021-06-04 12:51:07 -05:00
ajaust
1fd1f1c93f
py-pyprecice: Add version 2.2.0.2 and 2.2.1.1 (#24138)
* add versions 2.2.0.2 and 2.2.1.1

* Add maintainer

Added Ishaan as additional maintainer as he is also maintainer of the Python bindings

* add new major precice version as dependency
2021-06-04 10:06:40 -05:00
Tamara Dahlgren
a0259cc4f4
Update stand-alone tests to use test stage work directory (#24130) 2021-06-04 07:28:03 -04:00