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Author SHA1 Message Date
Zack Galbreath
f7d080b7fb Move report writers to separate classes 2018-05-15 05:43:07 -07:00
Zack Galbreath
49e37a5ecf Add test case for CDash reporting 2018-05-15 05:43:07 -07:00
Zack Galbreath
218331552c upload reports to CDash 2018-05-15 05:43:07 -07:00
Zack Galbreath
847c1216d0 Generate CDash reports for build/install step 2018-05-15 05:43:07 -07:00
Zack Galbreath
ae0ba373b8 CDash report for concretization errors 
Capture any concretization errors and record them in a CTest Update.xml file.
 2018-05-15 05:43:07 -07:00
Zack Galbreath
d7581697a5 CDash report for configure step 
Generate CTest XML file containing configure output
 2018-05-15 05:43:07 -07:00
Zack Galbreath
f35d5bbf2b Capture source line number in CTest log parser 2018-05-15 05:43:07 -07:00
Zack Galbreath
d174d6618f Fix typo in comment 2018-05-15 05:43:07 -07:00
Zack Galbreath
072f907831 Add CDash as a valid reporting format 2018-05-15 05:43:07 -07:00
Zack Galbreath
e4e8c72fa1 Initialize report generator before parsing specs 
This will allow us to generate reports for concretization errors
 2018-05-15 05:43:07 -07:00
Zack Galbreath
de01d70ae4 Allow --overwrite and --log-format to be used together 
Restructure the logic of the spack install command to allow these two
command-line arguments to be used at the same time.
 2018-05-15 05:43:07 -07:00
Zack Galbreath
6c5dbdd9cd Format-agnostic data structure for reports 
Replace the JUnit-specific terms 'testsuite' and 'testcase' with
'spec' and 'package', respectively.
 2018-05-15 05:43:07 -07:00
Serban Maerean
0598f70de2 patch petsc test cases for XL compiler (#8091) 
- After spack install, these test cases are built in a seperate step, outside of spack, but they need to patched after staging so users don't have to do it in a seperate step.

- The test cases are installed under `<petsc install directory>/share/petsc/examples` and can be built and executed by invoking `gmake -f gmakefile.test` in that directory.
 2018-05-14 23:53:05 -07:00
Robert Pavel
b956608631 Added Shim to Support hdf5+mpi in Spack Silo (#8130) 
* Added Shim to Support hdf5+mpi in Spack Silo

Added compatibility for hdf5+mpi to silo spackage to support spackages
with dependency chains that include silo and hf5+mpi

* Fixed fixable flake8 issue with silo spackage

Fixed missing whitespace around operator

* Setting MPI Variant to Default to True

As per guidance changing variant to default to MPI builds
 2018-05-14 20:29:03 -05:00
snehring
538d617d14 salmon: adding in version restriction for boost (#8129) 
1.67 does not work with this
 2018-05-14 18:48:28 -05:00
Cameron Smith
3a7fadd67e prenek missing X.h (#8121) 2018-05-14 18:19:46 -05:00
lingnanyuan
34a2d35e50 lordec: Create new package. (#8095) 
* lordec: Create new package.

* lordec: Add homepage, change to MakefilePackage.

* Modify dependency type.
 2018-05-14 16:56:49 -05:00
Eric
6cf1d25d14 r-fit-models: Create new package (#8122) 2018-05-14 16:50:54 -05:00
Eric
c5b1336b69 r-vipor: Create new package (#8128) 2018-05-14 16:38:59 -05:00
Brian Van Essen
281e22ed73 LBANN: add hydrogen as optional dependency (#8085) 
Add Hydrogen package for fork of Elemental library. Update LBANN
to use either Hydrogen or Elemental.
 2018-05-14 11:58:34 -07:00
Eric
e7a737621f r-shinydashboard: Create new package (#8116) 2018-05-14 13:00:18 -05:00
Eric
28982bd103 r-picante: Create new package (#8117) 
* r-picante: Create new package

* Remove dependency already included in RPackage base class
 2018-05-14 13:00:03 -05:00
Eric
f2cc7f769b r-squash: Create new package (#8118) 
* r-squash: Create new package

* Remove dependency already included in RPackage base class

* remove extra file
 2018-05-14 12:59:49 -05:00
Sajid Ali
a47ff73c6e Update py-llvmlite to reflect llvm@6 requirement for versions >0.23.0 (#8109) 
* 	new file:   package.py

* corrected using pep8online.com

* Update package.py

* correct typo

* as requested

* 	modified:   package.py

* Update package.py
 2018-05-14 11:26:01 -05:00
Levi Baber
b5d578a5e1 Aegean: new package (#8113) 
* aegean: new package

* genometools: set dependent env for aegean
 2018-05-14 11:10:19 -05:00
Christoph Junghans
1aef372fbf charliecloud: fix copyright (#8115) 2018-05-14 11:09:57 -05:00
Denis Davydov
42137d59ef dealii: another fix for quick tests only in 9.0 and thus hash (#8114) 2018-05-14 11:07:19 -05:00
健美猞猁
341132a87f A new pacakge: Kaiju. (#8111) 
* A new package: kaiju.

* Replace ftp:// with https://.
 2018-05-14 11:07:00 -05:00
Levi Baber
32662c4edb hisea: new package (#8112) 2018-05-14 09:46:54 -05:00
Sajid Ali
0dabe81a20 Add numexpr 3 (#8107) 
* 	new file:   package.py

* corrected using pep8online.com

* Update package.py

* correct typo

* as requested
 2018-05-14 09:46:14 -05:00
Denis Davydov
635f3e2969 dealii: update hash due to upstream changes (#8105) 2018-05-14 10:49:26 +02:00
healther
05cd983e10 add version 0.6.2 to yaml-cpp (#7931) 2018-05-14 10:44:27 +02:00
Sajid Ali
36b4c899fb Add cmake for newer version of libjpeg-turbo (#8102) 
* 	modified:   package.py

* add official build reference.

* Update package.py

* Update package.py

* Update package.py

* fixed with pep8online.com

* update make to make()

* change homepage
 2018-05-13 22:01:36 -05:00
Christoph Junghans
9f4c2a65a8 charliecloud: initial commit (#8106) 2018-05-13 22:00:18 -05:00
dorier
e758820ed7 boost: added the +numpy variant which enables building libboost_numpy (#8104) 
* added the +numpy variant which enables building the libboost_numpy libraries

* Update package.py

Added `type=('build', 'run')`
 2018-05-13 21:54:12 -05:00
Jon Rood
2d53043361 Create custom PATH that texlive requires in its module. (#8064) 
* Create custom PATH that texlive requires in its module.

* Updating texlive to 2018 distribution.

* Using platform instead of sys for easier portability across linux and osx.
 2018-05-12 18:40:36 -05:00
Yifan Zhu
8270344042 plink: new source version 1.9-beta5 (#8076) 
* plink: new source version 1.9-beta5

* plink: replace version 1.9 with 1.07
 2018-05-12 18:38:22 -05:00
George Hartzell
8dd5ac357c Add package for "bumpversion" (#8078) 
* Add package for "bumpversion"

bumpversion is a tool that automagically increments version numbers
for projects.  It can update files and do other magic along the way.

* Remove py- package prefix and use pypi.io URL

Renamed the package 'bumpversion'.

Fetch the package from pypi.io.

* Add version info for bumpverion@0.5.3
 2018-05-12 18:37:10 -05:00
Yifan Zhu
97f1b36c07 r-cdcfluview: new package (#8089) 
* r-cdcfluview: new package

* updated package.py
 2018-05-12 18:28:18 -05:00
Massimiliano Culpo
867bd9b48c
nfft: added version 3.4.1 Moved package to github (#8099) 2018-05-12 17:25:28 +02:00
Massimiliano Culpo
36ee0cbf88
netcdf: added version 4.6.1 (#8098) 2018-05-12 17:24:59 +02:00
Yifan Zhu
262de64792 shoremap: new package (#7343) 2018-05-12 08:22:45 +02:00
Denis Davydov
e271f14493 dealii: add 9.0.0 (#8096) 2018-05-11 21:59:25 -05:00
Howard Pritchard
efbc230742 pmix: add 1.2.5 and 2.0.3 bug fix releases (#8097) 
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2018-05-11 21:58:29 -05:00
Levi Baber
35e1af9acc masurca: new version (#8094) 
* masurca: new version

* masurca: reorder versions
 2018-05-11 14:43:21 -05:00
scheibelp
79669ac647
llvm: replace @when with internal check in @run_before (#8092) 
Fixes #8088

#7012 added a @when condition for a @run_before check to constrain
that check to only run on Darwin. @when is intended to be used to
choose one of several different implementations of a given function
and cannot be used to conditionally deactivate a check altogether.

This replaces the external decorator with a check that executes at
the beginning of the function.
 2018-05-11 12:32:26 -07:00
Mayeul d'Avezac
5bc970f9b6 adds new version to swiftsim (#8093) 2018-05-11 10:32:30 -05:00
Denis Davydov
28bebe13a8 dealii: disable tpetra when +cuda; check for '' in cuda_arch (#7958) 
* dealii: disable tpetra when +cuda; check for '' in cuda_arch

* trilinos: fix Kokkos CUDA

* Revert "trilinos: fix Kokkos CUDA"

This reverts commit 6aae894bc7d49c9e736c06f65b81b8c219443920.

* update according to @aprokop comments

* minor

* fix flake8
 2018-05-11 08:50:35 -05:00
Denis Davydov
206e61bafd gmsh: add netgen and tetgen (#8060) 
* gmsh: add netgen and tetgen
dealii: require gmsh+netgen+tetgen
netgen: use http instead of https

* dealii: add oce requirement to gmsh
 2018-05-11 14:22:12 +02:00
Yifan Zhu
55473dd321 r-mmwrweek: new pacakge (#8086) 2018-05-10 17:32:58 -05:00