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1654 commits

Author SHA1 Message Date
alalazo
b86e3047f3 openmpi : revert part of #1079 (OpenMPI can be built without fortran) 
Building OpenMPI without fortran is possible, and was already handled.
 Raising an install error we effectively renounce at clang+OpenMPI.

 build_environment : sets 'CC', 'CXX', and similar variables only if a compiler is found
 2016-06-20 20:46:11 +02:00
Tom Scogland
45482187b4 one more typo issue 2016-06-20 11:42:35 -07:00
Tom Scogland
f6aa864bc4 adding quotes to make sure the glob is interpreted correctly 2016-06-20 11:41:36 -07:00
Tom Scogland
ac728d3e60 fixing capitol->capital typos 2016-06-20 11:38:39 -07:00
Tom Scogland
6180e6c047 automatic case-insensitive like smartsearch, docs 
New documentation for the new options, also case insensitive by default
unless the user includes an upper-case character in their pattern.
 2016-06-20 11:33:56 -07:00
Mario Melara
6fb7b0fcf7 Merge branch 'develop' of https://github.com/LLNL/spack into bugfix/compiler_find 
Forgot to pull branch changes before
 2016-06-20 10:59:28 -07:00
Mario Melara
88888f5ba0 Got rid of unnecessary module arg 2016-06-20 10:58:20 -07:00
Mario Melara
1303b5a6a9 Adding more init_config as args to all_compilers,all_compilers_config, and get_compiler_config 2016-06-20 10:57:58 -07:00
Mario Melara
fe30113502 Adding init_config back. Don't initalize config rather let compiler_find do all the work. spack compiler list and spack compilers can do the work 2016-06-20 10:57:10 -07:00
Tom Scogland
0377f3580b switching argument naming 2016-06-20 10:53:19 -07:00
Adam J. Stewart
aa86488fd9 Flake8 2016-06-20 12:47:17 -05:00
Todd Gamblin
42ff1aaa75 Merge pull request #1064 from LLNL/bugfix/github-1043-script-backup 
do not create shebang.bak file
 2016-06-20 10:45:42 -07:00
Todd Gamblin
c09111bbef Merge pull request #1053 from davydden/pkg/dealii_suite_update 
update Petsc, Slepc, Trilinos, Superlu-dist and deal.II
 2016-06-20 10:32:52 -07:00
Adam J. Stewart
be407f531e Move around extension logic 2016-06-20 12:24:45 -05:00
Adam J. Stewart
28b2e36230 Add ctest executable 2016-06-20 12:24:45 -05:00
Adam J. Stewart
afff40e584 Flake8 fix for R templates 2016-06-20 12:24:45 -05:00
Adam J. Stewart
5dfc2052bd Flake8 change 2016-06-20 12:24:45 -05:00
Adam J. Stewart
98d03c74e1 Add support for less common compression schemes 2016-06-20 12:24:45 -05:00
Adam J. Stewart
5a55bb3f8d Modify R installation template 2016-06-20 12:24:45 -05:00
Adam J. Stewart
79fae306f6 Add extensions for Python/R and more configurable install 2016-06-20 12:24:45 -05:00
Adam J. Stewart
9500f2718b More Flake8 2016-06-20 12:24:45 -05:00
Adam J. Stewart
a21e845ce7 Flake8 2016-06-20 12:24:45 -05:00
Adam J. Stewart
2220784eda Add scons support, .zip support, and Cantera package 2016-06-20 12:24:45 -05:00
Peter Scheibel
1dc62e8a19 Merge branch 'develop' into features/cache-archives 2016-06-20 10:16:02 -07:00
Todd Gamblin
ce105e9bbe Merge branch 'bugfix/compiler_find' into develop 2016-06-20 09:34:25 -07:00
Todd Gamblin
84e21703bd Test no longer assumes compilers exist in /usr. 
- makes a fake gcc instead, and tests that.
 2016-06-20 09:28:39 -07:00
Mario Melara
64c83638ff Adding test to list of test_names 2016-06-18 11:11:46 -07:00
Mario Melara
15e6b88a8b Adding new tests for compiler command for spack's test suite 2016-06-18 10:51:38 -07:00
Mario Melara
36275f8e6e More clean up of init_config, also no need for a different find_compilers function. 2016-06-18 10:50:55 -07:00
Mario Melara
ccb62b4620 Getting rid of no longer used init_config arg 2016-06-18 10:49:39 -07:00
Todd Gamblin
f9efb746d7 Merge pull request #1032 from eschnett/eschnett/cc-quotes 
Add quotes around file name
 2016-06-18 08:57:18 -07:00
alalazo
9e0c20c794 environment : filter the current environment 
Previously only the environment obtained after sourcing the file was filtered.
This caused the appeareance of spurious unset commands in the list.
 2016-06-18 13:39:08 +02:00
alalazo
a17d1efe7c Merge branch 'develop' of https://github.com/LLNL/spack into features/source_diffs_in_environment_modifications 
Conflicts:
	lib/spack/spack/test/environment.py
 2016-06-18 13:31:29 +02:00
alalazo
670669ef80 qa : fixed flake8 issues 2016-06-18 13:10:35 +02:00
alalazo
a33077b77f unit tests : fixed test_alter_environment 2016-06-18 13:07:14 +02:00
alalazo
51cf847647 Merge branch 'develop' of https://github.com/LLNL/spack into features/module_file_explicit_load 
Conflicts:
	lib/spack/spack/test/modules.py
 2016-06-18 13:06:37 +02:00
Mario Melara
8af1c5fc8f Merge remote-tracking branch 'upstream/develop' into develop 
"Updating NERSC branch"
 2016-06-18 00:52:06 -07:00
Mario Melara
c703bfb54d Got rid of init_config flag since we don't need it. Instead we update the cache config if there are any changes 2016-06-18 00:48:08 -07:00
Todd Gamblin
4569df025e Merge pull request #1060 from mathstuf/no-break-long-words 
tty: do not break long words
 2016-06-17 14:51:26 -07:00
Todd Gamblin
d7f48e1ff0 Merge pull request #1061 from mathstuf/reindex-preserve-explicit 
reindex: preserve 'explicit' flags
 2016-06-17 14:29:47 -07:00
Todd Gamblin
0bbbfc2ef7 Merge pull request #946 from LLNL/features/intel2 
Intel software packages and license enhancements
 2016-06-17 14:28:39 -07:00
Tom Scogland
8770f2a0ea fixing last flake8 issue 2016-06-17 13:42:27 -07:00
Tom Scogland
0743ef4d0b fixing flake8 issues 2016-06-17 13:32:28 -07:00
Tom Scogland
a4ac99877a cmd/list: adding description search and glob by default 2016-06-17 12:00:35 -07:00
Mario Melara
fe5eec5230 'find and 'add' are options for adding compilers via command line 2016-06-17 09:16:03 -07:00
Mario Melara
df84fe0b58 Added init_config parameter so we don't initialize the config when user runs spack compiler add. Should ONLY add what user specifies. Find compilers takes in paths parameter. 2016-06-16 18:10:38 -07:00
Todd Gamblin
005827ab23 Replace 2.6-incompatible skipIf with a conditional. 
- skipIf doesn't work with Python 2.6.
 2016-06-16 12:12:29 -07:00
Todd Gamblin
f60ae61652 remove dead code, cleanup. 2016-06-16 10:44:15 -07:00
Todd Gamblin
8867adf942 simplify instance check. 2016-06-16 10:43:36 -07:00
Todd Gamblin
c7dfa1699a rename Mac OS X to macos 2016-06-16 10:43:12 -07:00
Mario Melara
6b03770602 Added str method to mac_osx so that whenever we try to access darwins different operating systems we can grab the name correctly. This avoids having to worry whether we have a version attached to it or not. 2016-06-16 09:44:37 -07:00
Todd Gamblin
88b73bacdb Merge branch 'features/newarch' into develop 
Conflicts:
	lib/spack/spack/config.py
	var/spack/repos/builtin/packages/lua/package.py
 2016-06-16 03:03:26 -07:00
Todd Gamblin
17b868381f Fixes #460: Do not show variants by default in spack find. 
This does two things:

1. By default `spack find` no longer shows variants.  You have to
   supply `-v` to get that

2. This improves the `colify` implementation so that it no longer pads
   the rightmost column.  This avoids the issue where if one spec was
   too long in the output, *all* specs would have space padding added
   to that width, and it would look like the output of `spack find`
   was double spaced.  This no longer happens -- the one bad line
   wraps around and the other lines are now single-spaced when you use
   `-v` with boost.
 2016-06-16 02:55:33 -07:00
Todd Gamblin
88b671f8b1 Just call old os "unknown" 2016-06-16 02:06:19 -07:00
Todd Gamblin
f3d6818d5c be more tolerant when parsing new specs. 2016-06-16 00:55:39 -07:00
Todd Gamblin
c90cc465f5 Add __contains__ to arch to satsify old packages. 2016-06-16 00:54:59 -07:00
Gregory L. Lee
d4df4375d5 removed unused import per flake8 report 2016-06-15 20:32:08 -07:00
Gregory L. Lee
1724ff5658 do not create shebang.bak file 2016-06-15 20:21:02 -07:00
Gregory Becker
3fcd54203c two minor fixes 2016-06-15 16:44:38 -07:00
Gregory Becker
2fc9ac4036 Two minor fixes 2016-06-15 16:39:39 -07:00
Ben Boeckel
716f12dd58 reindex: preserve 'explicit' flags 
Look up in the old database whether the spec was explicit or not and
preserve it into the new database.

Fixes #1050.
 2016-06-15 12:48:40 -04:00
Denis Davydov
3d3a26cd9a flake8 fixes for filesystem.py 2016-06-15 18:31:10 +02:00
Ben Boeckel
36decbfa69 tty: do not break long words 
These "words" tend to be file paths which are best left unbroken.

Fixes #1057.
 2016-06-15 12:22:35 -04:00
Denis Davydov
a860a3d614 superlu-dist: avoid harcoding blas/lapack/mpi; remove preferred version 2016-06-15 18:21:13 +02:00
Massimiliano Culpo
30c9d976f6 environment : added more logic to treat append and prepend path 2016-06-12 18:54:56 +02:00
alalazo
5300ffac7f qa : fixed flak8 checks 2016-06-12 15:11:26 +02:00
alalazo
a6681f2d7f environment modules : added function to construct them from source files 2016-06-12 15:06:17 +02:00
alalazo
3737169450 qa : fixed style and a bug reported by flake8 
lib/spack/spack/test/versions.py:313: [F811] redefinition of unused 'test_union_with_containment' from line 306
Flake8 found errors.
 2016-06-11 12:57:46 +02:00
alalazo
eb9b00b210 versions : added unit tests for the new properties 2016-06-11 12:44:21 +02:00
Gregory Becker
0fea167f97 I made a hash of that minor merge 
Merge commit '4eeb' into features/newarch
 2016-06-10 16:28:09 -07:00
Gregory Becker
992bcac794 changed compiler yaml format 2016-06-10 16:26:02 -07:00
Erik Schnetter
2a4d440003 Add quotes around file name 
$input_log will expand to file names with special characters (e.g. "@"), thus bash requires quotes.
 2016-06-08 19:14:01 -04:00
Orion Poplawski
7ce08c4216 Remove last two remaining from external imports 2016-06-08 13:51:31 -06:00
Peter Scheibel
3b71d78f3c rename URLMirrorFetchStrategy to CacheURLFetchStrategy since it isnt used to manage all mirror URLs - just the cache (the specific behavior that a URL may refer to a stale resource doesn't necessarily apply to mirrors) 2016-06-08 09:57:56 -07:00
alalazo
564483936f qa : fixed flake8 issues 2016-06-08 16:33:49 +02:00
alalazo
f4a39457de lmod : updated package and dependencies 2016-06-08 15:35:15 +02:00
Peter Scheibel
a2754894ea (1) FsCache store now takes a fetcher vs. just a copy command (2) use [1] to conditionally cache resource: only save it if there is a feature which identifies it uniquely (for example do not cache a repository if it pulls the latest state vs. a particular tag/commit) 2016-06-07 16:26:54 -07:00
Mario Melara
5715799d4e Added to_dict back into operating system 2016-06-07 14:15:28 -07:00
Mario Melara
4925be0bc4 Load external modules 2016-06-07 13:22:47 -07:00
Peter Scheibel
de1ec4be8b change source archive caching to omit digest from name and instead calculate and compare the checksum. This achieves the original goal of discarding stale cache files without preserving multiple files for the same version. 2016-06-06 12:26:13 -07:00
Mario Melara
196737c217 Changed to passing full architecture spec to function rather than just platform_os so we can grab the operating system from the platform getters 2016-06-06 10:29:19 -07:00
Mario Melara
835982faed Changed OS name to CNL10 so that we properly find the compilers for the test platform 2016-06-06 09:08:59 -07:00
Mario Melara
864191b6ed Got rid of unnecessary global keyword 2016-06-06 09:06:58 -07:00
Mario Melara
5b023bb0a1 Passing through full arch instead of just operating sysystem so that we can use the platform to get the operating system 2016-06-06 09:05:14 -07:00
Mario Melara
c7b48f6fef Passing full arch for proper compiler spec so that we can use the platform to get the operating system 2016-06-06 09:04:24 -07:00
Mario Melara
f751d68177 Passing architecture to functions to find compiler. We can use the platform name if provided to find the operating system. Also changed error to operating system instead of target since operating system is now in charge of compiler finding. 2016-06-06 09:03:32 -07:00
Tom Scogland
30e8e77fb6 Merge pull request #869 from brettviren/feature/views 
Feature/views
 2016-06-05 11:31:48 -07:00
alalazo
bdd874eb7f autopep8 2016-06-04 18:09:28 +02:00
alalazo
02cadb882b unit test : suffixes 2016-06-04 18:09:06 +02:00
alalazo
669caefccb unit test : wrong naming scheme in conflict 2016-06-04 18:00:18 +02:00
alalazo
d43cfefa43 autopep8 2016-06-04 17:24:52 +02:00
alalazo
2d6db06fca unit test : prerequisites 2016-06-04 17:24:27 +02:00
alalazo
ffa6fed3a3 unit test : custom module file load 2016-06-04 17:20:06 +02:00
alalazo
422d3d4db6 unit test : write a whitelisted module 2016-06-04 16:46:15 +02:00
alalazo
09b1daa7b9 unit test : write a blacklisted module 2016-06-04 16:23:41 +02:00
alalazo
408aa10210 unit test : whitelist 2016-06-04 16:18:15 +02:00
alalazo
a3f39c2315 autopep8 : fixed style issues 2016-06-04 11:23:23 +02:00
alalazo
97e2834816 unit test : wrong tag for dependencies 2016-06-04 11:20:35 +02:00
alalazo
2207ab8f23 unit test : inspect_path 2016-06-04 10:44:37 +02:00
alalazo
0e71b5dde8 unit test : update dictionary extending lists 2016-06-04 10:07:13 +02:00