Commit graph

27546 commits

Author SHA1 Message Date
Massimiliano Culpo
fc1e25c5e1
Don't run bootstrap on package only PRs (#32689)
* Don't run bootstrap on package only PRs

* Run bootstrap tests when ci.yaml is modified

* Test a package only PR

* Revert "Test a package only PR"

This reverts commit af96b1af60b0c31efcc9a2875ffb1a809ef97241.
2022-09-19 10:59:29 -07:00
Adam J. Stewart
bb071d03ba
py-sip: add v6.6.2 (#32695)
* py-sip: add v6.6.2

* Fix python deptype
2022-09-19 10:56:47 -07:00
Wouter Deconinck
0298823e28
edm4hep: allow variant cxxstd 20, sync with podio (#32698)
Now that `podio` can support `cxxstd` variants 17 and 20, we can allow `edm4hep` to use `cxxstd=20` as well, but must ensure that `edm4hep` uses the same `cxxstd` variant as `podio`. Solution as in `celeritas`.
2022-09-19 10:51:22 -07:00
Laurent Aphecetche
51d2c05022
geant4-vmc: add version 6-1-p1 (#32704) 2022-09-19 10:12:02 -07:00
iarspider
3762e7319d
Fix benchmark recipe after branch name was changed (#32708) 2022-09-19 10:08:30 -07:00
Wouter Deconinck
2f19826470
geant4: new bugfix version 11.0.3 (#32700)
Geant4 has a new bugfix version 11.0 patch-03, [release notes](https://geant4-data.web.cern.ch/ReleaseNotes/Patch.11.0-3.txt). No build system changes.
2022-09-19 13:11:31 +01:00
Manuela Kuhn
0f9cd73f58
py-neurora: add 1.1.6.8 (#32684) 2022-09-19 04:41:41 -06:00
Manuela Kuhn
17c16ac2fc
py-pydicom: add 2.3.0 (#32681) 2022-09-19 04:25:35 -06:00
John W. Parent
0376a62458
Attempt at patching phist find mpi heuristic (#32688)
for updated phist version
2022-09-18 11:18:28 -05:00
Manuela Kuhn
d4c13b0f8f
Add skip_import to PythonPackage and use it in py-nilearn (#32664)
* Add skip_import to PythonPackage and use it in py-nilearn

* Fix dependencies
2022-09-17 23:02:30 +00:00
Paul Kuberry
2c7c749986
xyce: Change preferred to last numeric version (#32679)
- Also handles new constraints on Trilinos version
2022-09-17 13:57:40 -06:00
Robert Cohn
9e0755ca3a
[intel-oneapi-compilers] fix CC/CXX (#32677) 2022-09-16 14:16:06 -04:00
Massimiliano Culpo
0f26931628
CI: add coverage on Windows (#32610)
Co-authored-by: Tom Scogland <scogland1@llnl.gov>
2022-09-16 05:38:29 -07:00
Todd Gamblin
a0c7209dc1
bugfix: package hash should affect process, dag, and dunder hashes (#32516)
This fixes a bug where two installations that differ only by package hash will not show
up in `spack find`.

The bug arose because `_cmp_node` on `Spec` didn't include the package hash in its
yielded fields. So, any two `Spec` objects that were only different by package hash
would appear to be equal and would overwrite each other when inserted into the same
`dict`. Note that we could still *install* specs with different package hashes, and they
would appear in the database, but we code that needed to put them into data structures
that use `__hash__` would have issues.

This PR makes `Spec.__hash__` and `Spec.__eq__` include the `process_hash()`, and it
makes `Spec._cmp_node` include the package hash. All of these *should* include all
information in a spec so that we don't end up in a situation where we are blind to
particular field differences.

Eventually, we should unify the `_cmp_*` methods with `to_node_dict` so there aren't two
sources of truth, but this needs some thought, since the `_cmp_*` methods exist for
speed. We should benchmark whether it's really worth having two types of hashing now
that we use `json` instead of `yaml` for spec hashing.

- [x] Add `package_hash` to `Spec._cmp_node`
- [x] Add `package_hash` to `spack.solve.asp.spec_clauses` so that the `package_hash`
      will show up in `spack diff`.
- [x] Add `package_hash` to the `process_hash` (which doesn't affect abstract specs
      but will make concrete specs correct)
- [x] Make `_cmp_iter` report the dag_hash so that no two specs with different
      process hashes will be considered equal.
2022-09-16 00:57:10 +00:00
liuyangzhuan
46d7ba9f78
adding butterflypack 2.2.0 (#32670) 2022-09-15 18:14:01 -06:00
iarspider
31c24cd0d5
New package: xrdcl-record (#32663)
* New package: xrdcl-record
* Flake-8
2022-09-15 10:13:37 -07:00
Matthew Archer
66b451a70d
Fenicsx v0.5.0 (#32611)
* initial commit of 0.5.0 changes
* updated dependencies
* updated ffcx sha
* comment style
* llvm compilers
* introduce pugixml dependency for 0.5.0:
* update compilers to support C++20 features
* style fixes
* xtensor and xtl not needed for basix 0.5.0 and above
* Skip to Basix 0.5.1

The 0.5.1 release removes the C++ build dependency on Python that sneaked into the 0.5.0 build system.

* Improve depends on version ranges
* More dependency version improvements

Co-authored-by: Chris Richardson <chris@bpi.cam.ac.uk>
Co-authored-by: Garth N. Wells <gnw20@cam.ac.uk>
2022-09-15 08:11:25 -07:00
Robert Underwood
6f15d8ac76
added missing dependency for py-msgpack that breaks neovim (#32631)
* added missing dependency for py-msgpack that breaks neovim

* Update var/spack/repos/builtin/packages/py-pynvim/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Robert Underwood <runderwood@anl.gov>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-09-15 09:45:39 -05:00
Glenn Johnson
123354e920
FPLO: add new package (#32580) 2022-09-15 10:03:05 +02:00
Matthieu Dorier
eaf3f7c17c
[py-pip] fix setup_dependent_package in py-pip (#32632) 2022-09-14 23:41:34 -06:00
Vicente Bolea
dde5867d15
libcatalyst: use git instead of fixed urls (#32642)
The issue is that we are not not able to install (Fetch URL error) any
version of catalyst other than the specified in the spack package.py.
This very version is accessible only because it is cached by Spack. The
real URL does not exist anymore, I believe the reason is that there used
to be a tag in catalyst that does not exist anymore.
2022-09-14 17:05:02 -07:00
John W. Parent
deca34676f
Bugfix: find_libraries (#32653)
53a7b49 created a reference error which broke `.libs` (and
`find_libraries`) for many packages. This fixes the reference
error and improves the testing for `find_libraries` by actually
checking the extension types of libraries that are retrieved by
the function.
2022-09-14 14:45:42 -06:00
Peter Scheibel
7971985a06
Manifest parsing: skip invalid manifest files (#32467)
* catch json schema errors and reraise as property of SpackError
* no need to catch subclass of given error
* Builtin json library for Python 2 uses more generic type
* Correct instantiation of SpackError (requires a string rather than an exception)
* Use exception chaining (where possible)
2022-09-14 13:02:51 -07:00
Sergey Kosukhin
ebb20eb8f8
llvm: fix detection of LLDB_PYTHON_EXE_RELATIVE_PATH (#32584) 2022-09-14 12:45:41 -06:00
psakievich
045a5e80cb
Allow version to accept the '=' token without activating lexer switch (#32257) 2022-09-14 10:16:28 -07:00
Valentin Volkl
01c9780577
py-awkward: allow newer, fixed rapidjson versions (#32650)
Rapidjson was constrained due to a bug (see https://github.com/spack/spack/pull/29889) , but newer (although untagged) versions of rapidjson have since been added to spack (https://github.com/spack/spack/pull/29869). Tested the build of py-awkward with the latest, works fine.
2022-09-14 11:57:20 -05:00
iarspider
5ffde1d51c
Add checksum for yoda 1.9.6 (#32648) 2022-09-14 09:48:56 -07:00
Ishaan Desai
4453653418
[py-pyprecice] add v2.5.0.0 and v2.5.0.1 and update checksum of v2.4.0.0 (#32551)
* Update versions 2.5.0.0 and 2.5.0.1

* Applying review changes

* Updating incorrect checksum for v2.4.0.0

* Add for loop to define depends_on for preCICE versions and bindings versions

* Formatting

* Missing comma
2022-09-14 09:55:48 -05:00
Paul Kuberry
f37e9addcd
compadre: add v1.5.0, v1.4.1 (#32609) 2022-09-14 06:49:52 -06:00
Houjun Tang
c1b3f0e02f
Add hdf5-vol-async v1.3 (#32634) 2022-09-14 04:21:48 -06:00
Adam J. Stewart
ddd18351a1
py-pytorch-lightning: add v1.7.6 (#32644) 2022-09-14 02:09:58 -06:00
Adam J. Stewart
ce56cb23fe
py-tokenize-rt: add missing setuptools dependency (#32639) 2022-09-14 10:04:03 +02:00
Jonas Thies
8d2cd4a620
phist: add v1.9.5 (#32621) 2022-09-14 09:46:09 +02:00
Erik Schnetter
9543716d81
berkeley-db: Correct TLS auto-detection (#32592) 2022-09-13 22:13:50 -06:00
Zack Galbreath
4ebdc5643e
Revert "e4s ci: restore power builds (#32296)" (#32633)
This reverts commit 0d18c32bca.
2022-09-14 03:26:26 +00:00
Adam J. Stewart
93c39464e3
json-glib: add pkgconfig dependency (#32638) 2022-09-13 21:18:55 -06:00
Adam J. Stewart
cb323b1f55
graphite2: fix build on macOS (#32636) 2022-09-13 21:16:59 -06:00
João Seródio
9f72962dd1
New package: py-qiskit-nature (#32628) 2022-09-13 21:16:38 -06:00
Robert Underwood
9e5f3f96dd
add ability to disable werror for rocksdb (#32618)
* add ability to disable werror for rocksdb
* Update var/spack/repos/builtin/packages/rocksdb/package.py

Co-authored-by: Robert Underwood <runderwood@anl.gov>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-09-13 19:45:56 -06:00
Sam Broderick
d6a3ffc301
Update module_file_support.rst (#32629)
Missing lead in "This may to inconsistent modulfiles if..."
2022-09-14 01:41:50 +00:00
Jonas Thies
4654d66905
packages/phist: new version 1.10 (#32581)
* packages/phist: new version 1.10

* fix (and narrow) conflicts, thanks @glennpj
2022-09-13 17:21:46 -05:00
Ondřej Čertík
463c5eacca
Add libraqm package; enable in py-pillow (#32619)
* Add libraqm package

* py-pillow: Add optional raqm dependency/variant

* Use sha256

* Use " instead of '

* Use more explicit import

* Only add raqm from @8.4.0:

* Make the docstring shorter to satisfy flake

* Add conflict, silence warning, adjust version

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-09-13 14:13:57 -06:00
Aurelien Bouteiller
83d6aff03a
Parsec: v3.0.2209 (#32617)
Signed-off-by: Aurelien Bouteiller <bouteill@icl.utk.edu>

Signed-off-by: Aurelien Bouteiller <bouteill@icl.utk.edu>
2022-09-13 13:33:56 -06:00
Carlos Bederián
3b46a0bffe
gromacs: add 2022.3 (#32624) 2022-09-13 12:41:57 -06:00
Chris White
937b576b5b
fix depends on versioning (#32626) 2022-09-13 10:29:21 -07:00
John W. Parent
53a7b49619
Windows rpath support (#31930)
Add a post-install step which runs (only) on Windows to modify an
install prefix, adding symlinks to all dependency libraries.

Windows does not have the same concept of RPATHs as Linux, but when
resolving symbols will check the local directory for dependency
libraries; by placing a symlink to each dependency library in the
directory with the library that needs it, the package can then
use all Spack-built dependencies.

Note:

* This collects dependency libraries based on Package.rpath, which
  includes only direct link dependencies
* There is no examination of libraries to check what dependencies
  they require, so all libraries of dependencies are symlinked
  into any directory of the package which contains libraries
2022-09-13 10:28:29 -07:00
Cameron Stanavige
251d86e5ab
unifyfs & gotcha: new releases (#32625)
UnifyFS:
- Add 1.0 release
- Deprecate older, unsupported versions
- Set fortran variant to true by default
- Update gotcha and mochi-margo dependency versions for unifyfs@1.0
  and unifyfs@develop
- Add conflict of unifyfs with libfabric 1.13.* versions
- Update configure_args to use helper functions

GOTCHA: Hasn't been under active development for a couple years but
the develop branch has some fixes UnifyFS uses. To avoid having
UnifyFS v1.0 depend on a develop branch of a dependency, this creates
a new release in the Gotcha Spack package based on the most recent
commit of the develop branch.
2022-09-13 10:53:11 -06:00
Cory Bloor
633a4cbd46
rocsparse: add spack build test (#31529)
* rocsparse: add spack build test

* Fix Navi 1x patch for ROCm 5.2

* Remove bench variant and other cleanup

* Fix style
2022-09-13 08:42:42 -07:00
Jordan Ogas
3e331c7397
charliecloud: deprecate old versions (#32462)
* tidy, deprecate old versions

* bump python

* begrudgingly apply less readable style

* adjust comment spacing

* apply ghastly multiline function arguments
2022-09-13 09:25:55 -06:00
Tamara Dahlgren
e97915eef2
Add an issue template for reporting package stand-alone test failures (#32487) 2022-09-13 08:22:04 -06:00