Commit graph

15270 commits

Author SHA1 Message Date
Michael Kuhn
6855e8e10f
pcre: Add 8.44 (#16397) 2020-04-30 14:29:24 -05:00
Ben Bergen
6d7daf0def
Resolves: https://github.com/spack/spack/issues/16394 (#16395)
Build problem with gcc 10.x
2020-04-30 11:16:00 -06:00
Adam J. Stewart
b55b7d5707
Fix kokkos-kernels tuple unpacking (#16393) 2020-04-30 11:36:50 -05:00
Christoph Junghans
cfb307b8e7
lammps: fix build with kokkos (#16390) 2020-04-30 10:29:08 -06:00
Adam J. Stewart
6c24142ebd
Fix coreutils configure_args (#16391) 2020-04-30 11:13:23 -05:00
Christoph Junghans
74c9ba551a
cabana: add v0.2 and fix kokkos deps (#16389) 2020-04-30 09:49:02 -06:00
darmac
b0ecaa1093
Add new package: bashtop (#16383) 2020-04-30 10:45:48 -05:00
Satish Balay
b2df39ea3a
petsc: switch hdf5 spec from --with-hdf5-dir to --with-hdf5-lib (#16376)
This way - we can detect and use hdf5:hl,fortran - if enabled, but not require it as a dependency
2020-04-30 10:40:25 -05:00
Satish Balay
3a3f871718
xsdk: update to mfem and py-petsc4py changes (#16378)
mfem variant hypre is now rolled into variant mpi - so update spec accordingly

mfem@4.0.1-xsdk+superlu-dist is broken and unsupported - so disable it

with the addition of py-petsc4py@3.13.0 - conretizer gets confused and is not picking py-petsc4py@3.12.0 as a compatible dependency with petsc@3.12. So manually specify it.
Also depends_on('py-libensemble@0.5.2+petsc4py ^py-petsc4py@3.12.0' causes concretizer to hang forever
2020-04-30 10:33:02 -05:00
Christoph Junghans
d5d4e16f3d
graphviz: fix cairo dep (#16387) 2020-04-30 10:29:20 -05:00
Christoph Junghans
f005ec016b
kokkos: fix typos (#16388) 2020-04-30 09:09:13 -06:00
Jeremy
598c233f78
Update kokkos for new 3.x build systems (#16358)
* change old Makefile-based Kokkos to kokkos-legacy

* add Kokkos 3.x packages

Co-authored-by: Jeremiah J Wilke <jjwilke@kokkos-dev-2.sandia.gov>
2020-04-30 08:13:47 -06:00
Teodor Nikolov
9627cbbe1b
lapackpp and blaspp: added packages (develop branch) (#16373) 2020-04-30 16:05:45 +02:00
Toyohisa Kameyama
54b71b2b69
JHPCN-DF: added package at v1.1.0 (#16384) 2020-04-30 15:03:35 +02:00
Benoit Coste
6c751f931c
py-pyquaternion: added package at v0.9.5 (#16386) 2020-04-30 14:50:28 +02:00
Chris Green
9698907e74
Spack command extensions: error-handling (#13635)
Generally speaking, errors that are encountered when attempting to load
command extensions now terminate the running Spack instance.

* Added new exceptions `spack.cmd.PythonNameError` and
  `spack.cmd.CommandNameError`.
* New functions `spack.cmd.require_python_name(pname)` and
  `spack.cmd.require_cmd_name(cname)` check that `pname` and `cname`
  respectively meet requirements, throwing the appropriate error if not.
* `spack.cmd.get_module()` uses `require_cmd_name()` and passes through
  exceptions from module load attempts.
* `spack.cmd.get_command()` uses `require_cmd_name()` and invokes
  `get_module()` with the correct command-name form rather than the
  previous (incorrect) Python name.
* Added New exceptions `spack.extensions.CommandNotFoundError` and
  `spack.extensions.ExtensionNamingError`.
* `_extension_regexp` has a new leading underscore to indicate expected
  privacy.
* `spack.extensions.extension_name()` raises an `ExtensionNamingError`
  rather than using `tty.warn()`.
* `spack.extensions.load_command_extension()` checks command source
  existence early and bails out if missing. Also, exceptions raised by
  `load_module_from_file()` are passed through.
* `spack.extensions.get_module()` raises `CommandNotFoundError` as
  appropriate.
* Spack `main()` allows `parser.add_command()` exceptions to cause
  program end.

Tests:

* More common boilerplate has been pulled out into fixtures including
  `sys.modules` dictionary cleanup and resource-managed creation of a
  simple command extension with specified contents in the source file
  for a single named command.
* "Hello, World!" test now uses a command named `hello-world` instead of
  `hello` in order to verify correct handling of commands with hyphens.
* New tests for:
  * Missing (or misnamed) command.
  * Badly-named extension.
  * Verification that errors encountered during import of a command are
    propagated upward.

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-04-29 18:18:48 -07:00
Carson Woods
d12e588c60
charliecloud: add more checksummed versions (#16146)
* Add more checksummed versions

* Remove all versions not supported by autotools build method

* Add old build system for older versions

* Add suggested changes
2020-04-29 17:22:22 -05:00
Adam J. Stewart
eef75ddd45
py-mypy: setuptools needed at run-time (#16375) 2020-04-29 13:50:34 -05:00
Dr. Christian Tacke
0385e84775
boost: Patch for boostorg/process/issues/116 (#16371)
Patch for "Unable to compile code using boost/process.hpp"
See: https://github.com/boostorg/process/issues/116
2020-04-29 12:53:58 -05:00
Nathan
b6b44948b8
prefix gets removed when adding additional configure options (#16335)
* prefix gets removed when adding additional configure options

* Update waf documentation to reflect the new change
2020-04-29 10:52:23 -05:00
darmac
42d7fd30c4
Add new package: brpc (#16309)
* Add new package: brpc

* change a patch for brpc

* refine brpc version

* refine brpc patch constraint
2020-04-29 09:58:35 -05:00
darmac
5697894b22
Add new package: graylog2-server (#16370) 2020-04-29 09:58:09 -05:00
darmac
890059c635
Add new package: libconfuse (#16368) 2020-04-29 09:57:38 -05:00
darmac
35b9901fa0
Add new package: fping (#16367) 2020-04-29 09:57:16 -05:00
darmac
0d9b003169
Add new package: trident (#16342)
* Add new package: trident

* remove unused source code
2020-04-29 08:20:05 -05:00
Jonathan R. Madsen
39bbe8f9d4
Update timemory to support new dependencies and expose more build options (#16241)
* Update timemory/package.py to support new dependencies and expose more build options

* Added missing 'use_arch' option handling

* Fixes for python 2.6

* Fix pyflake error F632

* F632 flake fixes

* Update package.py

* Update package.py

* 80 char width + added extra conflicts + fixed kokkos_modules reference

* 79 char width

* Removed submodule builds

- added allinea_map variant
- disabled caliper by default
- added ompt_{standalone,llvm} variants

* flake8 updates

* 79 char width
2020-04-29 08:19:17 -05:00
Joseph Ciurej
97e67b385c
ffmpeg: add v1.0.10, v2.8.15; add '+avresample'; improve variant handling (#16359)
* ffmpeg: add older versions (i.e. 2.8.15, 1.0.10), add 'avresample' variant

* ffmpeg: update variant handling to support older versions (i.e. 2.8.15, 1.0.10)
2020-04-29 09:33:22 +02:00
Joseph Ciurej
c37857f995
openscenegraph: add v3.4.0, v3.4.1; add '+ffmpeg' (#16360)
* openscenegraph: add v3.4.0/3.4.1, update versioning to use git, improve dependency handling (esp. for ffmpeg, opengl)

* openscenegraph: add '+ffmpeg' variant, add 'jasper' dependency, clean up cmake config variables

* openscenegraph: reverted fetches to use checksums to improve reliability

* openscenegraph: add a few more explicit dependencies (e.g. png, tiff, glib).
2020-04-29 09:27:27 +02:00
Ryan Mast
6c0d4fb5e5
helics: fixed dependency on boost (#16363) 2020-04-29 09:10:33 +02:00
Dr. Christian Tacke
67ad8ed546
root: added v6.20.04, better variant handling (#16362)
* Add version 6.20.04
* This version still requires numpy for +python
* ROOT 6.20 renamed the define from python to pyroot:
  Add appropiate handling
2020-04-29 09:05:17 +02:00
Adam J. Stewart
8b4b7aacbb
py-pandas: add 1.0.X release (#16366) 2020-04-28 23:14:17 -05:00
Ryan Mast
25c17e0ca6
helics: Add version 2.5.0 (#16364)
Add HELICS package version 2.5.0
2020-04-28 19:21:22 -05:00
Hadrien G
2d02769bea
[dd4hep] Fix inappropriate patch line break (#16361)
Sometimes, text editors automate things a little too much...
2020-04-28 19:17:13 -05:00
Jeffrey Salmond
703111c01b
Add amgx (#16357)
* add amgx package

* add amgx variants for mkl and magma support

* fix typo in cmake option

* flake8 fix formatting

* Apply suggestions from code review - use mkl virtual provider

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Apply suggestions from code review - fix copypasta

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-28 14:36:55 -05:00
Axel Huebl
00d83cd79d
dev-build: stop before phase (#14699)
Add `-b,--before` option to dev-build command to stop before the phase in question.
2020-04-28 09:55:57 -07:00
Axel Huebl
7670ae468f
Docs: Limit Microarch on Travis CI (#16200)
Update the travis CI docs: limiting the microarch is essential
for caching.
2020-04-28 11:54:02 -05:00
Carson Woods
6e63ff1688
netcdf-fortran: add new variants (#16046)
* Add additional variants to netcdf-fortran

* Fix duplicate variant

* Clean up variants based on review feedback

* Addtional variant changes

* Convert jna variant to single line

* Fix proper version constraints for jna variant
2020-04-28 11:15:19 -05:00
Stephen McDowell
4ed5cee940
jsoncpp add 1.9.2, patch %clang@10 for implicit conversion (#16153)
* add 1.9.2, patch %clang@10 for implicit conversion

* flake8: "fix" hanging indent (squash: because is that really more readable?)
2020-04-28 11:14:36 -05:00
darmac
af9c3b31de
Add new package: figlet (#16355) 2020-04-28 11:12:50 -05:00
Cameron Smith
d3ffb12274
kokkos: add versions 3.0.00 and 3.1.00 (#16354) 2020-04-28 11:11:50 -05:00
darmac
48de131b08
bazel: support for aarch64 platform (#16350) 2020-04-28 11:07:46 -05:00
darmac
a1e03151b2
Add new package: etcd (#16348) 2020-04-28 11:07:02 -05:00
darmac
2f88af4d2c
Add new package: kubernetes (#16347) 2020-04-28 11:06:24 -05:00
Jeffrey Salmond
4aed5daeba
adjust petsc to build cuda only when requested explicitly (#16275)
* adjust petsc+cuda to build cuda only when requested explicitly

* activate petsc library support only when explicitly requested

* flake8 fixes
2020-04-28 10:52:39 -05:00
Carson Woods
27b7d4bd21
openmpi: add additional variants (#16044)
* Add variants to OpenMPI

* Add variant for toggling runpath

* Fix typo

* Remove blank line whitespace
2020-04-28 10:51:30 -05:00
Tom Payerle
aec3589679
netcdf-c: Patch to support hdf linked against libtirpc (#15994)
If hdf was built with +libtirpc, we need to add -ltirpc to our link
flags.
2020-04-28 09:43:53 -05:00
Massimiliano Culpo
50318e4ee3
travis: extend the list of e-mails being notified of failures (#16352) 2020-04-28 14:55:44 +02:00
Massimiliano Culpo
a540e36922
relocate: remove an assertion in _make_relative (#16351)
This was an oversight in #15654 since `os.path.isfile`
checks that the something is a file in the current
filesystem.
2020-04-28 14:53:22 +02:00
Christoph Junghans
9615ac42cf
votca-*: fix stable deps (#16339) 2020-04-28 13:08:00 +02:00
darmac
cf31472e5a
cassandra: added v3.11.6 and dependency on Java (#16341) 2020-04-28 13:04:31 +02:00