Commit graph

27471 commits

Author SHA1 Message Date
Adam J. Stewart
dc0836804f
py-rasterio: add v1.3.2 (#32277) 2022-08-22 16:15:33 +02:00
kwryankrattiger
a38beeaed2
HPX: ROCm and Cuda conflict needed (#32178)
Discovered this missing conflict when building the e4s enviroment with
unify:when_possible. #31940
2022-08-22 16:13:59 +02:00
Kelly (KT) Thompson
1c61f0420a
Provide patches provided by consumers of draco. (#32281) 2022-08-22 16:04:58 +02:00
Robert Cohn
00b244853e
enable packages that use numpy for oneapi e4s stack (#32293)
* enable geopm oneapi

* enable packages that depend on py-numpy

* disable nan warnings

* undo geopm enable

* undo geopm, it has multiple compile issues
2022-08-22 07:02:22 -07:00
Kendra Long!
1a030aa417
draco: add v7_14_0 (#32267) 2022-08-22 16:02:11 +02:00
Eric Brugger
c28f1c0b42
VisIt: add conduit and mfem variants (#32255) 2022-08-22 15:59:29 +02:00
Olivier Cessenat
a20c9b2d8e
keepassxc: option autotype with pcsclite (#32288) 2022-08-22 15:50:41 +02:00
Jonas Thies
88a58abcf8
openfoam-org: add v9 and v10 (#32274) 2022-08-22 15:33:40 +02:00
Rémi Lacroix
e16f0b9f12
Molden: update URLs. (#32207) 2022-08-22 14:48:44 +02:00
Valentin Volkl
4d0612abfc
baurmc: correct compile flag (#31305) 2022-08-22 14:28:20 +02:00
Valentin Volkl
408076adf0
prophecy4f: add hep tag, install to share (#31308) 2022-08-22 14:27:54 +02:00
Cory Bloor
dde6d00ab9
hip@4.5.2: fix installation (#31416)
In a fast-moving project with as many forks as LLVM, it's difficult to
accurately determine if a function exists just by checking the version
number. The existing version check fails, for example, with llvm-amdgpu
from ROCm 4.5. It is more robust to directly check if the function
exists.
2022-08-22 12:39:09 +02:00
Alan Sill
4c64a0fab2
VASP: add v6.3.2; handle changes to makefile.include naming pattern (#31701)
Added the SHA256 for version 6.3.2 and added logic to eal with the change of naming pattern for the makefile.include files that now appears to leave out the "linux_" prefix. (Changes should be. backwards compatible.)

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
Co-authored-by: alansill <alansill@users.noreply.github.com>
2022-08-22 12:21:00 +02:00
haralmha
01a4844ac4
feynhiggs: update url (#31760) 2022-08-22 12:20:09 +02:00
Adam J. Stewart
2ff132a62f
py-isort: add v5.10.1 (#32302) 2022-08-22 11:09:09 +02:00
Olivier Cessenat
f7424e1fea
qscintilla: coherence with py-sip (#32128) 2022-08-21 11:32:10 -07:00
Wileam Y. Phan
ab31256ee7
gcc: add 12.2.0 (#32270) 2022-08-21 15:30:37 +02:00
sparkyniner
21e6679056
spack list: add --tag flag (#32016)
* modified list.py and added functionality for --tag

* Removed long and very long, shifted rest of code above return statement

* removed results variable

* added import statement at top

* added the line accidentally deleted

* added line accidentally deleted

* changed p.name to p, added line inside if statement

* line order switched

* [@spackbot] updating style on behalf of sparkyniner

* ran update completion command

* add tests

* Update lib/spack/spack/test/cmd/list.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* [@spackbot] updating style on behalf of sparkyniner

* changed argument to mock_packages and moved code under filter by tag

* removed bad rebase code and added additional test

* [@spackbot] updating style on behalf of sparkyniner

* added line removed earlier

* added line removed earlier

* replaced function

* added more recommended changes

Co-authored-by: sairaj <sairaj@sairajs-MacBook-Pro.local>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-08-20 16:09:44 -06:00
Morten Kristensen
8d02e2cc52
py-vermin: add latest version 1.4.2 (#32287) 2022-08-20 13:35:07 -05:00
Axel Huebl
39beafc99a
Ascent, Conduit & VTK-h: don't assume I have Fortran (#32285)
* VTK-h: don't assume I have Fortran

Don't assume I have a working Fortran compiler in my toolchain :)

* Conduit: Do not Assume Fortran

* Ascent: Do not Assume Fortran

* fix style
2022-08-20 10:12:23 -07:00
kwryankrattiger
fff929d5ab
WarpX: Add hints for FindMPI (#31842)
This seems to be needed on some cray systems and is safe on normal
desktops.
2022-08-20 15:45:03 +02:00
Olivier Cessenat
51619fdb00
gxsview: new version 2022.05.09 (#32289) 2022-08-20 14:33:10 +02:00
Axel Huebl
7db1c69945
Vis: macOS llvm-openmp (#32284)
Add some OpenMP lib provider for Apple-Clang to the vis packages.
2022-08-20 01:11:03 -07:00
Sreenivasa Murthy Kolam
11a4f5e25d
Enable Tensorflow for ROCm. Add ROCm dependencies. (#32248)
* Build Tensorflow using the fork for rocm. Initial commit

* re-order the versions

* fix style errors

* address review comments

* add conflicts for rocm version

* address review comments

* remove rocm variant as its added by ROCmPackage
2022-08-20 01:50:38 +00:00
eugeneswalker
5590cad1ef
py-globus-sdk: add new versions; unpin py-cryptography version constraint (#32280)
* add mothra tests

* py-globus-sdk: add new versions; unpin py-cryptography version constraint

* Update var/spack/repos/builtin/packages/py-globus-sdk/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-08-19 19:30:07 -06:00
eugeneswalker
09486c082c
py-pyjwt: fix py-cryptography version constraints (#32279)
* py-pyjwt: fix py-cryptography version constraints

* Update var/spack/repos/builtin/packages/py-pyjwt/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-08-19 18:50:20 -06:00
Adam J. Stewart
dab46296b6
py-setuptools: add v64.0.0 (#32078) 2022-08-19 14:20:08 -07:00
Axel Huebl
7f314947dd
Doc: WarpX SENSEI Work-Around (#32276)
Follow-up to #31542
2022-08-19 14:10:00 -06:00
Rémi Lacroix
56e4203450
netcdf-cxx: Update the download URL (#32275) 2022-08-19 18:44:14 +00:00
Adam J. Stewart
b0990aa1fa
py-pygments: add v2.13.0 (#32168) 2022-08-19 18:09:51 +00:00
Seth R. Johnson
e29d9de2dd
ForTrilinos: new versions 2.0.1, 2.1.0 (#32265)
* ForTrilinos: new versions 2.0.1, 2.1.0

I also had to update the checksum for the released 2.0.0: see #32000 for
the explanation and solution to keep this from happening again.

* Soooo stylish
2022-08-19 11:37:55 -06:00
Harmen Stoppels
7acc082fba
ncurses 6.3 restrict patch (#32271) 2022-08-19 10:11:32 -07:00
Olivier Cessenat
362cdc5437
pcsclite: add new package (#32129) 2022-08-19 18:22:15 +02:00
eugeneswalker
e1bce8c577
e4s %oneapi: add aml +ze (level zero) (#32161) 2022-08-19 08:25:15 -07:00
Seth R. Johnson
7760625b3f
py-macholib: add v1.16 (#31967)
* py-macholib: add v1.16

* Update dependencies

Even 1.11 requires `altgraph (>=0.15)`. The lastest requires no
additional dependencies.
2022-08-19 08:25:51 -06:00
dunatotatos
77c2332df6
htslib, samtools: add v1.15 and v1.15.1 (#32259) 2022-08-19 13:56:14 +00:00
Olivier Cessenat
8773c183b5
ghostscript: new version 9.56.1 (#32088) 2022-08-19 15:00:14 +02:00
Harmen Stoppels
2daea9e4b4
docs: add a note about an issue being solved on develop (#32261) 2022-08-19 12:40:41 +00:00
psakievich
abf847ce82
Add messages to assertions in asp.py (#32237)
Assertions without messages if/when hit create a blank error message for users.  

This PR adds error messages to all assertions in asp.py even
if it seems unlikely they will ever be needed.
2022-08-19 14:15:25 +02:00
iarspider
8d99d33128
xpmem: fix configure with ~kernel-module (#32258) 2022-08-19 12:36:11 +02:00
eugeneswalker
a42a874faa
e4s oneapi: compiler environment: prepend lib dir to LD_LIBRARY_PATH (#32227) 2022-08-19 06:30:18 -04:00
Mikael Simberg
be62635154
Add tracy variant to pika (#32090) 2022-08-19 02:38:07 -06:00
eugeneswalker
022d59f4a5
e4s: add dealii +cuda (#32159) 2022-08-18 22:41:57 -06:00
Massimiliano Culpo
605d72133b
spack.util.package_hash: parametrize unit-tests (#32240)
* spack.util.package_hash: parametrize unit-tests

* Fix comment
2022-08-18 18:17:43 -07:00
eugeneswalker
b2d1d07d2e
e4s %oneapi: add amrex +sycl (#32162) 2022-08-18 18:16:55 -07:00
Mark W. Krentel
908055e37c
hpctoolkit: update git url from github to gitlab (#32252) 2022-08-18 17:35:34 -07:00
Wouter Deconinck
90352d7223
kassiopeia: new version 3.8.2 (#32254)
* kassiopeia: new version 3.8.2

There was no version 3.8.1, so here is the diff with 3.8.0: https://github.com/KATRIN-Experiment/Kassiopeia/compare/v3.8.0...v3.8.2

Build system changes:
- default `cxxstd` is now 17.

* kassiopeia: updated hash

* kassiopeia: use spec.satisfies

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-08-18 17:20:17 -07:00
kwryankrattiger
d77a8f7aa1
Sensei v4 (#30432)
* Sensei: Refactor package to work with v4.0.0

* Add missing MPI dependency
* Patch bug in libsim adapter
* Simplify conflicts with when-clauses
* Conflict variants that are incompatible (catalyst/libsim/ascent)
* Fix paraview version constraints to be more clear
* Add version constraints for VTK
* Drop unneeded visit restrictions
* Specify +vtkm dependency on ParaView's VTKm
* +hl is not needed for VTK, and is already specified in the VTK recipe
when it is needed
* Pass paths for adios2 and ascent packages

* ECP-SDK: Enable sensei

* CI: Add sensei to the data-vis-sdk pipeline

* Sensei: Change VISIT_DIR to work on linux

* Fixup: style check

* Sensei: Add patch for version detection

* CI: revert SDK pipeline in favor of new matrices

* Sensei: Formatting fixes
2022-08-18 17:20:01 -07:00
snehring
364e4e03ef
pasta: missing setuptools dep (#32220)
* pasta: missing setuptools dep

* pasta: remove extraneous which

* pasta: convert to PythonPackage

* pasta: specify dendropy version
2022-08-18 22:53:09 +00:00
Adam J. Stewart
373d2ccf9f
py-rasterio: add v1.3.1 (#32244) 2022-08-18 21:08:46 +00:00