This PR fixes a couple of things with the libbeagle package.
- libbeagle can only be built for one GPU type. Add a test for that.
- version 2 had the arch statement in
libhmsbeagle/GPU/kernels/Makefile.am but version 3 has it in
configure.ac. Put the variant specified value in configure.ac for
consistency.
Due to recent changes in the `netcdf-c` package, it is now necessary to explicitly request a non-mpi-enabled hdf5 build if building a non-mpi-enabled seacas.
* libvdwxc: unbreak concretization, request fftw-api
mixing both fftw and fftw-api in a dependency tree can trigger the
following:
```
$ spack spec cp2k@master +sirius
==> [2020-09-16-12:36:06.552981] sirius applying constraint gsl
==> [2020-09-16-12:36:06.554270] sirius applying constraint openblas@0.3.10%gcc@7.5.0~consistent_fpcsr~ilp64+pic+shared threads=none arch=linux-opensuse_leap15-sandybridge
Traceback (most recent call last):
File "./bin/spack", line 64, in <module>
sys.exit(spack.main.main())
File "/data/tiziano/debug-spack/spack2/lib/spack/spack/main.py", line 762, in main
return _invoke_command(command, parser, args, unknown)
File "/data/tiziano/debug-spack/spack2/lib/spack/spack/main.py", line 490, in _invoke_command
return_val = command(parser, args)
File "/data/tiziano/debug-spack/spack2/lib/spack/spack/cmd/spec.py", line 103, in spec
spec.concretize()
File "/data/tiziano/debug-spack/spack2/lib/spack/spack/spec.py", line 2228, in concretize
user_spec_deps=user_spec_deps),
File "/data/tiziano/debug-spack/spack2/lib/spack/spack/spec.py", line 2716, in normalize
visited, all_spec_deps, provider_index, tests)
File "/data/tiziano/debug-spack/spack2/lib/spack/spack/spec.py", line 2654, in _normalize_helper
dep, visited, spec_deps, provider_index, tests)
File "/data/tiziano/debug-spack/spack2/lib/spack/spack/spec.py", line 2613, in _merge_dependency
visited, spec_deps, provider_index, tests)
File "/data/tiziano/debug-spack/spack2/lib/spack/spack/spec.py", line 2654, in _normalize_helper
dep, visited, spec_deps, provider_index, tests)
File "/data/tiziano/debug-spack/spack2/lib/spack/spack/spec.py", line 2554, in _merge_dependency
provider = self._find_provider(dep, provider_index)
File "/data/tiziano/debug-spack/spack2/lib/spack/spack/spec.py", line 2489, in _find_provider
providers = provider_index.providers_for(vdep)
File "/data/tiziano/debug-spack/spack2/lib/spack/spack/provider_index.py", line 80, in providers_for
return sorted(s.copy() for s in result)
File "/data/tiziano/debug-spack/spack2/lib/spack/llnl/util/lang.py", line 249, in <lambda>
lambda s, o: o is not None and s._cmp_key() < o._cmp_key())
TypeError: '<' not supported between instances of 'str' and 'NoneType'
```
while at the same point disallowing MKL as a fftw provider.
Solving both issues by depending on `fftw-api@3` instead and adding a
conflict on `^fftw~mpi` when using `+mpi` (thanks to alalazo).
* cp2k: use conflicts instead of runtime checks for fftw/openblas variants
* Initial Draft of Cosmoflow Spackage
Need to add in logic to streamline cpu/gpu builds
* Added ~cuda logic to cosmoflow spackage
Added logic to support a ~cuda build for cosmoflow
* Requested Changes to Cosmoflow Spackage
Made requested changes to cosmoflow spackage
* Likwid versions >= 5.0.0 depend on Lua 5.2.
According to https://github.com/RRZE-HPC/likwid/issues/324 recent
versions of Likwid require Lua 5.2.
* Update var/spack/repos/builtin/packages/likwid/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
MatIO development has switched to github from sourceforge. Updated the `git` and `url` variables and added the four new versions (1.5.14 -- 1.5.17) that have been released since the last update of this package.
* qbox: install to correct directory structure
* qbox: Have qb executable put in bin rather than src subdir
* qbox: Fix python script shebangs to use python from path
* qbox: Add dependencies on gnuplot, python2 for utilities
* qbox: fix flake8 issue
* qbox: Add $prefix/util to PATH
* Initial CRADL Spackage Work
Currently resolving ```--single-version-externally-managed``` error
* Fixed GPUtil Issues
Thanks to Vinay Ramakrishnaiah for overwriting install
* Finished CRADL Install Function
Finished CRADL install function which is basically copying the scripts
to the install directory. Also resolved flake8 issues for PR purposes
* Add new package: webbench
* Update var/spack/repos/builtin/packages/webbench/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* cpio: add --rtlib=compiler-rt for %fj
* cpio: simplify if
* Update var/spack/repos/builtin/packages/cpio/package.py
This seems better.
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Add new package: hping
* Update var/spack/repos/builtin/packages/hping/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/hping/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update package.py
Fix flake8 errors
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* ncurses: adding external support.
* Update var/spack/repos/builtin/packages/ncurses/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/ncurses/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/ncurses/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Fixing includes.
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Checksummed New Flux Versions
Checksummed new flux versions to let spack detect them
* Added CXXFlags to build Flux-sched
Added missing cxxflags to build flux-sched
* Adding Cuda Variant to SW4Lite
Added cuda variant of sw4lite as per guidance in README
* Updated SW4Lite+cuda to Current Header Conventions
Updated sw4lite+cuda to use current conventions for spackage include
dirs
* Fixing FLake8 Issue with Sw4lite+cuda Fix
Fixed overly long line and further underlined sticky note reminding me
to run flake8 BEFORE pushing
* Switching to Spack Compiler Wrapper
Switching to spack compiler wrapper for consistency
* Orca: Add new versions.
* Orca: Support OpenMPI without the legacy wrappers.
By default, Spack builds OpenMPI without the legacy wrappers when using the Slurm scheduler. This breaks Orca since its binaries are hardcoded to call "mpirun". To workaround this issue, add a "mpirun" wrapper which calls "srun" when required.
* cp2k: do not support ~openmp for v8+
* sirius: version bump
* cp2k: fix overlapping deps for elpa
fixes#18029
* cp2k: update SIRIUS dependency for v8+
* spfft: requires CMake 3.11+
* cp2k: fix build with +sirius
* darshan-util: remove return(-1) from void function
* Update var/spack/repos/builtin/packages/darshan-util/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/darshan-util/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* gamess-ri-mp2-miniapp: initial import
* flake8
* Update var/spack/repos/builtin/packages/gamess-ri-mp2-miniapp/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
