Commit graph

33064 commits

Author SHA1 Message Date
Sebastian Grimberg
cf87d9f199
palace: fix bugs introduced in #38910 (#38983) 2023-07-19 07:21:06 +02:00
Rocco Meli
d7a1a61702
Improve RDKit package (#36566) 2023-07-18 20:57:55 -04:00
markus-ferrell
416edfa229
Windows testing: enable tests for installer components (#36970)
These tests now work without any changes to core. Furthermore, it is
surprising that they had to be disabled (at least, as long as the
installer.py tests are run on Windows: these tests are more-basic
and their functionality would have been exercised automatically).
2023-07-18 16:19:14 -07:00
Sebastian Grimberg
9beb02ea83
palace: add v0.11.2 (#38910) 2023-07-18 22:29:35 +00:00
Manuela Kuhn
ce4162e28b
py-poetry-core: add 1.6.1 and fix url (#38452)
* py-poetry-core: add 1.6.1 and fix url

* Update var/spack/repos/builtin/packages/py-poetry-core/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Re-add python upper bound for older versions

* Update var/spack/repos/builtin/packages/py-poetry-core/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-07-18 18:10:14 -04:00
Massimiliano Culpo
14f3297cca
Ensure the bootstrap store has a padding length of zero (#38975)
Without this PR, padded length was propagating from user configuration to
bootstrap configuration, and was causing the issue reported in #38963
2023-07-18 23:49:22 +02:00
markus-ferrell
f24f98a1e2
Windows testing: enable bootstrap test (#36972) 2023-07-18 14:42:26 -07:00
Julien Loiseau
64361e1fc7
FleCSPH: update package (#37888)
Co-authored-by: Richard Berger <richard.berger@outlook.com>
2023-07-18 23:06:36 +02:00
Aiden Grossman
9a05dce3bf
fftw: fix build with clang15+ (#38889)
In Clang 15, -Wint-conversion became an error instead of a warning,
breaking the fftw build for clang versions > 15. This patch fixes fftw
builds with clang 15+ by passing -Wno-error=int-conversion as a cflag.
2023-07-18 23:02:51 +02:00
markus-ferrell
ffc283ab8b
test_clear_failures_success: run on Windows too (#36792) 2023-07-18 22:42:57 +02:00
Harmen Stoppels
3fef586cfb
binary cache docs: remove redundant flag and comment (#38960) 2023-07-18 22:38:04 +02:00
eugeneswalker
515b53ac50
e4s cray: expand spec list (#38947)
* e4s cray: expand spec list

* unzip: require %gcc

* remove datatrasnferkit
2023-07-18 20:04:26 +00:00
markus-ferrell
b710778bda
Windows testing: enable architecture test (#36973)
Works out of the box: remove skip.
2023-07-18 12:33:52 -07:00
markus-ferrell
a965fe9354
Windows testing: enable "spack clean" tests (#36840)
They work out out of the box on windows. Simply removing skips.
2023-07-18 12:25:32 -07:00
fpruvost
e47a2a7a65
chameleon: update to version 1.2.0 (#38936) 2023-07-18 12:57:42 -04:00
Harmen Stoppels
5b23c5dcc0
buildcache push: make --allow-root the default and deprecate the option (#38878)
Without --allow-root spack cannot push binaries that contain paths in
binaries. This flag is almost always needed, so there is no point of
requiring users to spell it out. 

Even without --allow-root, rpaths would still have to be patched, so the 
flag is not there to guarantee binaries are not modified on install.

This commit makes --allow-root the default, and drops the code 
required for it. It also deprecates `spack buildcache preview`, since 
the command made sense only with --allow-root.

As a side effect, Spack no longer depends on binutils for relocation
2023-07-18 18:45:14 +02:00
Massimiliano Culpo
ad1fdcdf48
Pin Spack dev dependencies on RtD (#38950) 2023-07-18 18:37:04 +02:00
Massimiliano Culpo
82aa27f5a5
Fix default construction of locks (#38953)
This fixes a typo introduced in a refactor
2023-07-18 14:36:41 +02:00
Taillefumier Mathieu
909f185f02
Update dbcsr and cp2k to latest version (#38939)
Co-authored-by: Mikael Simberg <mikael.simberg@iki.fi>
2023-07-18 11:48:42 +02:00
Xavier Delaruelle
8c7adbf8f3
modules: add support for conflict in lua modulefile (#36701)
Add support for conflict directives in Lua modulefile like done for Tcl
modulefile.

Note that conflicts are correctly honored on Lmod and Environment
Modules <4.2 only if mutually expressed on both modulefiles that
conflict with each other.

Migrate conflict code from Tcl-specific classes to the common part. Add
tests for Lmod and split the conflict test case in two.

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-07-18 10:24:46 +02:00
Peter Scheibel
10165397da
"spack develop": always pull full history for git repos (#38343) 2023-07-18 09:53:33 +02:00
Houjun Tang
af60b802f7
Update package.py (#38946) 2023-07-18 03:17:48 -04:00
Rocco Meli
4e8f91a0c7
wannier90 github (#38927) 2023-07-17 23:52:38 -07:00
Michael Kuhn
7b87f0a569
meson: add 1.2.0, 1.1.1 and 1.0.2 (#38935) 2023-07-17 23:50:39 -07:00
Andrey Perestoronin
377fecd86f
added new packages (#38941) 2023-07-18 00:47:46 -04:00
David Huber
2c7df5ce35
Update gsi-ncdiag/1.1.1 sha256 (#38943) 2023-07-18 00:12:43 -04:00
Manuela Kuhn
3bcd1a6c0e
py-soupsieve: add 2.4.1 (#38929) 2023-07-17 17:48:27 -05:00
Manuela Kuhn
a468ca402e
py-setuptools: add 68.0.0 (#38930)
* py-setuptools: add 68.0.0

* [@spackbot] updating style on behalf of manuelakuhn
2023-07-17 17:47:08 -05:00
Manuela Kuhn
ecb9d35cd4
py-setuptools-rust: add 1.6.0 (#38932) 2023-07-17 17:46:03 -05:00
Manuela Kuhn
d7b2f9d756
py-sphinxcontrib-applehelp: add 1.0.4 (#38933) 2023-07-17 17:44:32 -05:00
Manuela Kuhn
8c303cd29a
py-sphinxcontrib-htmlhelp: add 2.0.1 (#38934) 2023-07-17 17:43:37 -05:00
Dan Lipsa
4831d45852
Decompression: fix naming issues (#37749)
* When using system tools to unpack a .gz file, the input file needs a
  different name than the output file. Normally, we generate this new
  name by stripping off the .gz extension off of the file name.
  This was not sufficient if the file name did not have an extension,
  so we temporarily rename the file in that case.
* When using system tar utility to untar on Windows, we were (erroneously)
  skipping the actual untar step if the filename was lacking a .tar
  extension
* For foo.txz, we were not changing the extension of the decompressed file
  (i.e. we would decompress foo.txz to foo.txz). This did not cause any
  problems, but is confusing, so has been updated such that the output
  filename reflects its decompressed state (i.e. foo.tar).
* Added test for strip_compression_extension
* Update test_native_unpacking to test each archive type with and without
  an extension as part of the file name (i.e. we test "foo.tar.gz", but
  also make sure we decompress properly if it is named "foo").
2023-07-17 14:33:18 -07:00
Harmen Stoppels
f05837a480
Fix wrong StageComposite keep override (#38938)
`Stage(keep=True)` was ignored when put in a composite that doesn't
override the value.
2023-07-17 23:20:24 +02:00
Manuela Kuhn
1fa60a6c70
py-pyside: fix build with python3.8 (#38886)
* py-pyside: fix build for version 1.2.2

* Remove check for python version

* Fix style

* Remove unnecessary patch

* Update var/spack/repos/builtin/packages/py-pyside/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-pyside/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Remove py-markupsafe conflict

* Update var/spack/repos/builtin/packages/py-pyside/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-pyside/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Move python check removal below suprocess patch

* Remove preference of 1.2.2

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-07-17 15:54:59 -05:00
snehring
1730bcaa31
soapdenovo2: strip optimization flags from injected flags (#38846)
* soapdenovo2: strip optimization flags from injected flags
* soapdenovo2: add maintainer
* soapdenovo2: only append on cflags
* soapdenovo2: clean up some wording and implementation
2023-07-17 13:33:37 -07:00
Alberto Sartori
e6235a8ff9
justbuild: add v1.1.3 (#38925) 2023-07-17 13:23:14 -07:00
Manuela Kuhn
884b4952af
Fix python import tests (#38928)
Running `spack test run <python package>` resulted in the error
```
'str' object is not callable
```
because the python executable was not set correctly.
2023-07-17 13:19:47 -07:00
Seth R. Johnson
cc73789744
vecgeom: new version 1.2.4 (#38940) 2023-07-17 12:00:57 -07:00
Ashwin Kumar Karnad
c9b7eb3647
libxc: add kxc and lxc variants (#38937)
* libxc: add kxc and lxc variants
* libxc: add kxc and lxc variants for @5:0:
* Apply suggestion from @tldahlgren

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-07-17 13:53:29 -04:00
Harmen Stoppels
1100cdf5a0
Enable http/2 support by default in curl (#38750) 2023-07-17 09:21:51 -07:00
Manuela Kuhn
6ac93e1095
librsvg: add 2.56.2 and rust upper version limit for 2.51 (#38766)
* librsvg: add rust upper version limit

* librsvg: Add 2.56.2
2023-07-17 09:14:05 -07:00
Martin Aumüller
193e6e7678
qt-base: fix build on macos, when +network (#38519)
* qt-base: always link to GSS framework on macOS

On macos, the code in src/network/kernel/qauthenticator.cpp
unconditionally includes the header from the GSS framework, so we should
link against it.

This applies two patches from the dev branch. They are to be cherry-picked
into the 6.5 (probably released with 6.5.2) and 6.6 branches, but they
apply against 6.3.2 as well.

* qt-base: disable libproxy on macOS

src/network/CMakeLists.txt disables it on MACOS anyway. And as it is not
found without pkg-config, building with +network would break because of
the feature being explicitly enabled.

* qt-base: don't depend on pkgconfig on macOS

On macOS, usage of pkg-config is disabled by unsetting
PKG_CONFIG_EXECUTABLE, unless the feature pkg-config is requested explicitly.

* qt-base: don't depend on at-spi2-core on macOS

Does not build on macOS and seems to be targeted at linux. Qt6 on
homebrew does not depend on it, either.

* qt-base: fix long lines

* qt-base: restrict use of pkgconfig to linux

yes, probably not needed on windows, either

Co-authored-by: Alec Scott <alec@bcs.sh>

* qt-base: disable libproxy on Windows as well

according to src/network/CMakeLists.txt it's only used on Unix

* qt-base: improvements based on reviewer suggestions

---------

Co-authored-by: Alec Scott <alec@bcs.sh>
2023-07-17 08:53:47 -07:00
Elliott Slaughter
dc216adde2
legion: Add 23.06.0, variants for UCX, max nodes, update CUDA version. (#38759)
* legion: Add 23.06.0, variants for UCX, max nodes, update CUDA version.

* legion: Make newer CUDA versions dependent on newer Legion.

* legion: Update CUDA arch list so that we can stop tracking manually.
2023-07-17 08:51:45 -07:00
Maxence Thévenet
bf43471a7c
HiPACE++ 23.07 (#38862)
* Update package and fix compilation issues
* fix order
2023-07-17 08:23:27 -07:00
Daniele Cesarini
469f06a8f2
Added py-eprosima-fastdds package (#38877)
* Added py-eprosima-fastdds package

* Fixed python extension and dependency version

* Added build type for swig

* Added minimum cmake support

* Added py-test dependency

* Added suggestion on python extension

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Added suggestion on build type for cmake

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-07-17 11:12:29 -04:00
Massimiliano Culpo
53ae969aa0
Lock, database and store don't need global configuration on construction (#33495)
Lock objects can now be instantiated independently,
without being tied to the global configuration. The
same is true for database and store objects.

The database __init__ method has been simplified to
take a single lock configuration object. Some common
lock configurations (e.g. NO_LOCK or NO_TIMEOUT) have
been named and are provided as globals.

The use_store context manager keeps the configuration
consistent by pushing and popping an internal scope.
It can also be tuned by passing extra data to set up
e.g. upstreams or anything else that might be related
to the store.
2023-07-17 16:51:04 +02:00
Adam J. Stewart
2b5a7bb4d7
Update new PythonPackage template to prefer --config-settings (#38918) 2023-07-17 08:03:05 -05:00
Aiden Grossman
e91db77930
root: Add package name to all conflict messages (#38920)
Not having the package name in the conflict messages can make debugging
conflicts exceedingly hard when trying to concretize an environment with
a sufficient number of packages. This patch adds the package name to all
of the conflict messages so that it is easy to tell just from the
message which package is causing conflicts.
2023-07-17 07:10:36 -05:00
Peter Scheibel
31431f967a
Environment/depfile: fix bug with Git hash versions (attempt #2) (#37560)
Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2023-07-17 11:17:32 +00:00
Massimiliano Culpo
63b88c4b75
Minimal cleanup of a few tests in test/packaging.py (#38880)
* Minimal cleanup of a few tests in packaging.py

* Use f-strings
2023-07-17 10:36:29 +02:00