Commit graph

34253 commits

Author SHA1 Message Date
Brian Van Essen
9f1223e7a3
Bugfix spectrum-mpi module generation (#41466)
* Ensure that additional environment variables are set when a module
file is generated.

* Fixed the detection of the opal_prefix / MPI_ROOT field to use ompi_info.
---------

Co-authored-by: Greg Becker <becker33@llnl.gov>
2023-12-07 11:06:07 -08:00
Vijay M
5beef28444
Update homepage URL, add 5.5.1 version, remove bad version hashes, and other minro changes (#41492) 2023-12-07 10:52:06 -08:00
snehring
e618a93f3d
iqtree2: add new version 2.2.2.7 and new variant lsd2 (#41467)
* iqtree2: add new version 2.2.2.7 and new variant lsd2
* iqtree2: reorder variant and resource
2023-12-07 11:30:14 -07:00
Garth N. Wells
3f0ec5c580
Update UFCx for v0.7.0. (#41392) 2023-12-07 10:20:34 -08:00
Kyle Knoepfel
14392efc6d
Permit shared-library for libbacktrace (#41454) 2023-12-07 10:17:31 -08:00
John W. Parent
d7406aaaa5
CMake: v3.26.6 (#41282) 2023-12-07 10:25:42 -07:00
Harmen Stoppels
5a7e691ae2
freebsd (#41480) 2023-12-07 09:19:55 -08:00
Dave Keeshan
b9f63ab40b
opensta: add new package (#41484)
* Add opensta, is allows 2 variants, zlib and cudd, but they are both enabled by default
* Remove unused import, os
2023-12-07 09:18:58 -08:00
Auriane R
4417b1f9ee
Update pika package to use f-strings (#41483) 2023-12-07 10:14:33 -07:00
Adam J. Stewart
04f14166cb
py-keras: add v3.0.1 (#41486) 2023-12-07 09:05:42 -08:00
Robert Cohn
223a54098e
[intel-mkl,intel-ipp,intel-daal]: deprecate packages (#41488) 2023-12-07 09:01:02 -08:00
Satish Balay
ea505e2d26
petsc: add variant +zoltan (#41472) 2023-12-07 10:51:00 -06:00
Ataf Fazledin Ahamed
e2b51e01be
traverse.py: use > 0 instead of >= 0 (#41482)
Signed-off-by: fazledyn-or <ataf@openrefactory.com>
2023-12-07 09:38:54 -07:00
jmlapre
a04ee77f77
trilinos: replace pytrilinos2 variant with python (#41435)
* depend_on python

There is an ill-named variant "python" that enables the pytrilinos1
variant.  This made it through our testing but broke on our actual
CI test machines.

* adjust "python" variant based on Trilinos version

For Trilinos <= 14, enable PyTrilinos(1). For later versions
of Trilinos, enable PyTrilinos2.

We still support directly enabling PyTrilinos2 via the "pytrilinos2"
variant.

* remove pytrilinos2 variant

* correct depends_on constraints
2023-12-07 10:28:13 -05:00
Jordan Galby
bb03ce7281
Do not use depfile in bootstrap (#41458)
- we don't have a fallback if make is not installed
- we assume file system locking works
- we don't verify that make is gnu make (bootstrapping fails on FreeBSD as a result)
- there are some weird race conditions in writing spack.yaml on concurrent spack install
- the view is updated after every package install instead of post environment install.
2023-12-07 10:09:49 +00:00
Massimiliano Culpo
31640652c7
audit: forbid nested dependencies in depends_on declarations (#41428)
Forbid nested dependencies in depends_on declarations, by running an audit in CI.

Fix the packages not passing the new audit:
- amd-aocl
- exago
- palace
- shapemapper
- xsdk-examples

ginkgo: add a commit sha to v1.5.0.glu_experimental
2023-12-07 10:21:01 +01:00
Samuel Browne
0ff0e8944e
trilinos: add v15.0.0 (#41465) 2023-12-07 10:07:02 +01:00
Jack Morrison
a877d812d0
rdma-core: Add new versions 41.5, 42.5, 43.4, 44.4, 45.3, 46.2, 47.1, 49.0 (#41473) 2023-12-07 09:58:06 +01:00
dependabot[bot]
24a59ffd36
build(deps): bump actions/setup-python from 4.8.0 to 5.0.0 (#41474)
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4.8.0 to 5.0.0.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](b64ffcaf5b...0a5c615913)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-12-07 09:55:55 +01:00
Dave Keeshan
57f46f0375
cudd: add new package (#41476) 2023-12-07 09:37:22 +01:00
Chris Green
7d45e132a6
[root] New variants, checksum changes, sundry improvements (#41463)
* New variants:
  - `tmvz-cpu`
  - `tmvz-gpu`
  - `tmvz-pymva`
  - `tmvz-sofie`

* Improve X-related dependencies.

* Improve TMVA-related dependencies with more specificity.

* Patch possible missing standard header include in Eve7.

* Patch Protobuf handling to support new Protobuf-provided CMake config
  files required to handle transitive `abseil-cpp` dependence.

* Add missing terminal newline to `webgui` patch to remove patch
  warning.

* Handle deprecated/removed build options.

* Handle unwanted system paths in various `PATH`-like environment
  variables.
2023-12-06 18:39:51 -06:00
Vicente Bolea
e7ac676417
paraview: dropping patch since changes exists (#41462) 2023-12-06 16:18:46 -07:00
Adam J. Stewart
94ba152ef5
py-torchmetrics: add v1.2.1 (#41456) 2023-12-06 12:48:28 -07:00
Massimiliano Culpo
5404a5bb82
llvm: reformulate a when condition to avoid tautology (#41461)
The condition on swig can be interpreted as "true if true,
false if false" and gives clingo the option to add swig
or not.

If not other optimization criteria break the tie, then
the concretization is non-deterministic.
2023-12-06 19:12:42 +01:00
Dave Keeshan
b522d8f610
yosys: add new package (#41416)
* Add EDA tools, yosys to Spack
* Add maintainers
* Move from format to f-strings
2023-12-06 09:47:58 -08:00
Thomas Madlener
2a57c11d28
lcio: add version 2.20.2, sio: add version 0.2 (#41451) 2023-12-06 09:46:18 -08:00
Thomas Madlener
1aa3a641ee
edm4hep: Update cmake version dependency for newer versions (#41450) 2023-12-06 09:43:24 -08:00
yizeyi18
6feba1590c
nwchem: add libxc/elpa support (#41376)
* added external libxc/elpa choice
* fixed formatting issues and 1 unused variant found by reviewer
* try to fix a string formatting issue
* try to fix some other string formatting issues
* fixed 1 flake8 style issue
* use explicit fftw-api@3
2023-12-06 09:38:46 -08:00
Chris Green
58a7912435
[catch2] Sundry improvements including C++20 support (#41199)
* Add `url_list` to facilitate finding new versions.

* `cxxstd` is not meaningful when `@:2.99.99` as it was a header-only
  package before v3.

* Support C++20/23, remove C++14 support.

* Add @greenc-FNAL to maintainers.

* Add CMake arguments to support testing, build of extras and examples.
2023-12-06 11:07:27 -06:00
yizeyi18
03ae2eb223
dla-future: add a patch (#41409)
* using std::int64_t needs include cstdint in gcc-13

Co-authored-by: Mikael Simberg <mikael.simberg@iki.fi>
2023-12-06 16:55:40 +01:00
Julien Cortial
013f0d3a13
Only build tests for proj package if required (#41065)
* Only build tests for proj package if required

Even if tests are not explictly required to be built, proj build them
anyway and tries to download Google Test.

* proj: fix name of test activation flag

* proj: Always set test activation flag

* proj: Patch test activation logic for versions 5.x
2023-12-06 09:32:39 -06:00
Eric Berquist
3e68aa0b2f
py-pre-commit: add 3.5.0 (#41438) 2023-12-06 09:11:32 -06:00
Gavin John
1da0d0342b
Add new versions of py-quast (#40788)
* Add new versions of py-quast

* Update hashes

* Add joblib and simplejson

* Fat finger

* Update dependency type
2023-12-06 09:04:17 -06:00
Lydéric Debusschère
6f7d91aebf
py-python-pptx: new package (#41315)
* py-python-pptx: new package

* py-python-pptx: use pil instead of pillow, remove version constraint on python

---------

Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2023-12-06 08:43:51 -06:00
Lydéric Debusschère
071c74d185
py-tldextract: new package (#41330)
* py-tldextract: new package

* py-tldextract: add version 5.1.1

* py-tldextract: fix version constraint on py-setuptools-scm

---------

Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2023-12-06 08:42:48 -06:00
Juan Miguel Carceller
51435d6d69
ruff: add version 0.1.6 (#41355)
* Add a new version of ruff

* Add a comment about where the dependency can be found

---------

Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2023-12-06 08:41:20 -06:00
Jordan Galby
8ce110e069
bootstrap: Don't catch Ctrl-C (#41449) 2023-12-06 14:58:14 +01:00
Auriane R
90aee11c33
Add pika 0.21.0 release (#41446) 2023-12-06 03:48:26 -07:00
Harmen Stoppels
4fc73bd7f3
minimal support for freebsd (#41434) 2023-12-06 10:27:22 +00:00
Dom Heinzeller
f7fc4b201d
Update py-werkzeug version dependency for py-graphene-tornado@2.6.1 (#41426)
* Update py-werkzeug version dependency for py-graphene-tornado@2.6.1

* Add note on diverging version requirements for py-werkzeug in py-graphene-tornado
2023-12-06 10:28:58 +01:00
Jim Edwards
84999b6996
mpiserial: rework installation (#40762) 2023-12-06 09:39:08 +01:00
Harmen Stoppels
b0f193071d
bootstrap status: no bash (#41431) 2023-12-06 09:20:59 +01:00
dependabot[bot]
d1c3374ccb
build(deps): bump actions/setup-python from 4.7.1 to 4.8.0 (#41441)
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4.7.1 to 4.8.0.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](65d7f2d534...b64ffcaf5b)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-12-06 09:20:14 +01:00
Richard Berger
cba8ba0466
legion: correct cuda dependency for cr version (#41119)
* legion: correct cuda dependency for cr version
* Update var/spack/repos/builtin/packages/legion/package.py

---------

Co-authored-by: Davis Herring <herring@lanl.gov>
2023-12-05 18:36:50 -08:00
Wouter Deconinck
d50f8d7b19
root: sha256 change on latest versions (#41401)
* root: sha256 change on latest version
* root: sha256 change on 6.28.10
* root: replace 6.26.12 by 6.26.14
* root: hash for 6.26.14
2023-12-05 18:20:27 -08:00
kjrstory
969fbbfb5a
foam-extend: add v5.0 (#40480)
* foam-extend:add new version
* depreacted versions
2023-12-05 18:11:59 -08:00
Robert Cohn
1cd5397b12
[intel-parallel-studio] Deprecate entire package (#41430) 2023-12-05 17:56:49 -08:00
psakievich
1829dbd7b6
CDash: Spack dumps stage errors to configure phase (#41436) 2023-12-05 22:05:39 +00:00
Philippe Virouleau
9e3b231e6f
julia: fix LLVM paches hashes (#41410) 2023-12-05 22:53:40 +01:00
Alec Scott
5911a677d4
py-gidgethub: add new package (#41286)
* py-gidgethub: add new package

* Add main branch version and scope flit/flit-core dependency

* Update var/spack/repos/builtin/packages/py-gidgethub/package.py

Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>

* Add optional dependencies as variants of package

* Add git url for main version

* Fix variant and dependency ordering

---------

Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>
2023-12-05 21:26:42 +01:00