This PR adds the r-dss package and the r-bsseq package, also new, as a
dependency. This includes the latest versions, which required updates to
the following dependencies:
- r-biocgenerics
- r-iranges
- r-s4vectors
- r-summarizedexperiment
Older versions of r-dss and r-bsseq are included as well to ensure
compatibility with older versions of the above dependencies.
* add tutorial setup script to share/spack
* Add check for Ubuntu 18, fix xvda check, fix apt-get errors
- now works on t2.micro, t2.small, and m instances
- apt-get needs retries around it to work
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
* add tutorial setup script to share/spack
* Add check for Ubuntu 18, fix xvda check, fix apt-get errors
- now works on t2.micro, t2.small, and m instances
- apt-get needs retries around it to work
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
A bug was introduced in #13100 where ChildErrors would be redundantly
printed when raised during a build. We should eventually revisit error
handling in builds and figure out what the right separation of
responsibilities is for distributed builds, but for now just skip
printing.
- [x] SpackErrors were designed to be printed by the forked process, not
by the parent, so check if they've already been printed.
- [x] update tests
A bug was introduced in #13100 where ChildErrors would be redundantly
printed when raised during a build. We should eventually revisit error
handling in builds and figure out what the right separation of
responsibilities is for distributed builds, but for now just skip
printing.
- [x] SpackErrors were designed to be printed by the forked process, not
by the parent, so check if they've already been printed.
- [x] update tests
* WHIZARD: add versions 2.8.4 and 2.8.3
* New package: LCIO
* WHIZARD: add optional dependency on LCIO
* WHIZARD: add optional dependency on Openloops
* WHIZARD: allow building with either hepmc or hepmc3 dependencies
* Openloops: set process_lib_dir in configure
* Openloops: fix reference to variant
astropy 3.2.1 fails to build with python 3.8.3 with
errors similar to this:
astropy/stats/_stats.c:318:11: error: too many arguments to function 'PyCode_New'
PyCode_New(a, 0, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
These are files that are generated by cython, but are included in the
tarball. Since there's apparently been an API change to PyCode_New, they will
need to be re-cythonized to compile correctly.
