Commit graph

20235 commits

Author SHA1 Message Date
Sinan
4c57c88d9e
py-zarr: add v2.4.0,v2.5.0,v2.6.1 (#22403)
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-03-19 22:06:30 +00:00
Tiziano Müller
3305a39c55
CP2K: update libxc dep, SIRIUS: update spla dep for 7+ (#22249) 2021-03-19 14:52:07 -06:00
Massimiliano Culpo
629f94b4e1
CI: drastically reduce the number of tests for package only PRs (#22410)
PRs that change only package recipes will only run tests under "package_sanity.py" and without coverage. This should result in a huge drop the cpu-time spent in CI for most PRs.
2021-03-19 11:04:53 -07:00
Daniel Arndt
245d67ed5c
Add ArborX smoke tests (#22356) 2021-03-19 12:39:06 +00:00
m-shunji
020c60649e
abinit: fix detection of Fujitsu compiler (#22239) 2021-03-19 12:27:31 +00:00
Gregory Lee
43f4d2da99
updated deps to get gtkplus to build (#22228)
* updated deps to get gtkplus to build

* gtk-doc requires docbook-xml 4.3

* patch gtk-doc build to find xml catalogs

* patch gtk-doc build to find xml catalogs

* patch gtk-doc build to find xml catalogs

* add new version, fix macOS build error

* reorder docbook versions from newest to oldest

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-03-19 09:31:14 +00:00
tilne
22a93300b4
Add aws-parallelcluster v2.10.3 (#22402)
Signed-off-by: Tim Lane <tilne@amazon.com>
2021-03-19 09:09:18 +00:00
Robert Mijakovic
396936d241
Adds new versions of cuDNN package (#22385) 2021-03-19 02:42:44 +00:00
Benjamin Tovar
818b416742
CCTools to version 7.2.4 (#22384) 2021-03-19 02:13:30 +00:00
Cyrus Harrison
4df1f62fd3
updates to conduit to add hostcfg and use cmake base (#22233) 2021-03-18 18:44:29 -07:00
AMD Toolchain Support
4f1a76a0d1
fixing the perf regression issues with OpenMPI v4.0.x till v4.1.0 for x86_64 (#22350) 2021-03-18 17:09:20 -07:00
Dr. Christian Tacke
d07cb59bef
root/intel-tbb interaction (#22366)
root 6.22 does not work with intel-tbb 2021.1.1.

So:
* Introduce conflicts()
  (a fitting depends_on in the comments, but does not help with the classic conretizer.)
* Mark 2020.3 as preferred to help concretizer, when newer versions come up.
* Previous discussion:
  https://github.com/spack/spack/pull/22263#issuecomment-797606475
* Relevant ROOT issue:
  https://github.com/root-project/root/issues/6933
2021-03-18 17:19:08 -06:00
Cody Balos
02c3b23a15
xsdk-examples: add new version (#22090) 2021-03-18 15:25:43 -07:00
Olivier Cessenat
628f9eadb5
perl-tk: creating package (#21586) 2021-03-18 11:20:18 -05:00
Paul Kuberry
a405811bfe
xyce: add new package (#22345) 2021-03-18 14:49:42 +00:00
Harmen Stoppels
196db55855
Fix broken spack -c flag (#22361) 2021-03-18 15:26:30 +01:00
Ryan Honeyager
c6f3f57c31
Add udunits2 v2.2.28 and target the new UCAR repository (#22370) 2021-03-18 12:47:20 +00:00
Axel Huebl
f901c61e68
py-yt: 3.6.1 (#22329)
* py-yt: 3.6.1

The latest bugfix release of yt-project fixes issues with matplotlib
version 3.3.0+.

* py-yt: add many more version constrains
2021-03-18 11:19:58 +00:00
Massimiliano Culpo
8cf6ad9917
archspec: update to latest version (#22357) 2021-03-18 00:23:09 -07:00
Benjamin Tovar
4c9c5393f1
CCTools: add v7.2.3 (#22355) 2021-03-18 08:10:08 +01:00
Harmen Stoppels
15645147ed
Tab to spaces (#22362) 2021-03-18 06:20:06 +00:00
Hector Martinez-Seara
441d09cc27
Amber (#22275)
* Improved amber package. Added amber20

* Corrected description link between ambertools and amber versions

* Fixed ambertools handling

* Apply pathes only when problematic traget requested

* fixed style issue

* Added amber20 sha256 checksum

* Improved documentation

* Removed preferred amber18

* Changef f-string to str.format()

* Changef f-string to str.format()

* removed url_for_version fuction
2021-03-18 05:45:24 +00:00
Seth R. Johnson
e5103b6914
openblas: fix older versions (#22358) 2021-03-18 03:21:58 +00:00
Harmen Stoppels
e57053bd32
Fix indentation compiler wrapper issue (#22352) 2021-03-17 18:45:10 +00:00
Tomoki, Karatsu
d934363ae5
intel-mpi-benchmarks: Take in upstream bugfix patches. (#22317) 2021-03-17 11:09:25 -07:00
Adam J. Stewart
251e4282f1
GDAL: add v3.2.2 (#22224) 2021-03-17 11:28:06 -06:00
Adam J. Stewart
2d623bab31
tidy-html5: add new package (#22286) 2021-03-17 16:14:39 +01:00
Dr. Christian Tacke
96e394845b
root: add v6.22.08 (#22263) 2021-03-17 16:14:12 +01:00
AMD Toolchain Support
e6c8fa1311
aocc: add support for v3.0 compilers (#22219)
A mitigation of a known issue that affects v3.0 is added, see
https://developer.amd.com/wp-content/resources/AOCC-3.0-Install-Guide.pdf
2021-03-17 15:06:25 +00:00
Harmen Stoppels
43dd7b84c0
spack location: bugfix for out of source build dirs (#22348) 2021-03-17 14:38:14 +00:00
Erik Schnetter
9a565e0ec7
shtools: add v4.8 (#22305) 2021-03-17 13:20:46 +01:00
Erik Schnetter
bac3ac4fdb
fasttransforms: add v0.5.0 (#22304) 2021-03-17 13:20:09 +01:00
Jen Herting
8d2944bf77
flac: add v1.3.3 (#22307) 2021-03-17 12:18:52 +01:00
Harmen Stoppels
889e83a9b5
boost: fix unicode bugs in Boost recipe (#22301) 2021-03-17 11:22:21 +01:00
Benjamin Tovar
047bb490cb
cctools: add v7.2.2 (#22325) 2021-03-17 11:19:01 +01:00
Erik Schnetter
2032c608e8
ssht: add v1.3.5 (#22306) 2021-03-17 11:16:56 +01:00
David Hadley
9e62eadce0
pythia6: fix wrong patch (#22338)
See #22330
2021-03-17 03:25:09 -06:00
Bryan Herman
364b9e7a27
add maintainer to py-h5py (#22332) 2021-03-16 18:46:16 -06:00
Tomoyasu Nojiri
857f6392a2
r-v8: Fix build error (#22314) 2021-03-16 19:39:30 -05:00
eugeneswalker
b75b029706
amrex: add gcc 8 conflicts (#22339) 2021-03-16 23:54:40 +00:00
Tiziano Müller
12cad38aef
llvm: enable ncurses patch for building on SUSE in 11.0.1 (#22319)
fixes #19625 again
2021-03-16 16:22:10 -07:00
Danny McClanahan
18fbd58fe6
fix weird failure in variant values (#22328) 2021-03-16 16:04:51 -07:00
AMD Toolchain Support
912606ad9a
spack recipe for aocl-sparse (#22079) 2021-03-16 14:34:25 -07:00
Wouter Deconinck
c9ba95cc5c
containerize: fix typo in documentation (#22331)
Before this fix, `spack containerize` complains that `centos/7` is invalid
(should have been `centos:7`)
2021-03-16 21:02:26 +00:00
AMD Toolchain Support
603331e669
WRF package: add aocc 3.0 support for WRF 3.9.1.1 and 4.2 (#22285)
* Added 2 new configure patch files to build WRF 3.9.1.1 and 4.2
  with aocc@3.0
* Renamed patch files used for building WRF 3.9.1.1 and 4.2 with
  aocc@2.3 (mostly, this also removes -march=native from AOCCOPT
  and updates LIBMVEC options for aocc@2.3)
2021-03-16 12:59:43 -07:00
Massimiliano Culpo
2aab415f3d
The action to detect changes needs a repository to be checked out on push event (#22324) 2021-03-16 17:27:41 +00:00
Massimiliano Culpo
b304b4bdb0
Speed-up CI by reorganizing tests (#22247)
* unit tests: mark slow tests as "maybeslow"

This commit also removes the "network" marker and
marks every "network" test as "maybeslow". Tests
marked as db are maintained, but they're not slow
anymore.

* GA: require style tests to pass before running unit-tests

* GA: make MacOS unit tests fail fast

* GA: move all unit tests into the same workflow, run style tests as a prerequisite

All the unit tests have been moved into the same workflow so that a single
run of the dorny/paths-filter action can be used to ask for coverage based
on the files that have been changed in a PR. The basic idea is that for PRs
that introduce only changes to packages coverage is not necessary, this
resulting in a faster execution of the tests.

Also, for package only PRs slow unit tests are skipped.

Finally, MacOS and linux unit tests are now conditional on style tests passing
meaning that e.g. we won't waste a MacOS worker if we know that the PR has
flake8 issues.

* Addressed review comments

* Skipping slow tests on MacOS for package only recipes

* QA: make tests on changes correct before merging
2021-03-16 08:16:31 -07:00
a-saitoh-fj
d36de79ba0
py-aiobotocore: New package (#22258)
* py-aiobotocore: New package

* py-aiobotocore: Added python dependencies, and Removed unnecessary whitespace
2021-03-16 08:57:54 -05:00
Todd Gamblin
3e570ce694 bugfix: allow imposed constraints to be overridden in special cases
In most cases, we want condition_holds(ID) to imply any imposed
constraints associated with the ID. However, the dependency relationship
in Spack is special because it's "extra" conditional -- a dependency
*condition* may hold, but we have decided that externals will not have
dependencies, so we need a way to avoid having imposed constraints appear
for nodes that don't exist.

This introduces a new rule that says that constraints are imposed
*unless* we define `do_not_impose(ID)`. This allows rules like
dependencies, which rely on more than just spec conditions, to cancel
imposed constraints.

We add one special case for this: dependencies of externals.
2021-03-16 12:50:14 +01:00
Todd Gamblin
e7cba04b95 bugfix: do not generate dep conditions when no dependency
We only consider test dependencies some of the time. Some packages are
*only* test dependencies. Spack's algorithm was previously generating
dependency conditions that could hold, *even* if there was no potential
dependency type.

- [x] change asp.py so that this can't happen -- we now only generate
      dependency types for possible dependencies.
2021-03-16 12:50:14 +01:00