Commit graph

12157 commits

Author SHA1 Message Date
iarspider
6fdbdaf5b6
New packages: madgraph, syscalc, collier, gosam-contrib (#17601)
* Add Collier and SysCalc recipes

* Remove extra syscalc version

* Build collier with -j1 for @:1.2.4

* Add recipe for gosam-contrib

* Update gosam-contrib recipe with 'provides'

* Madgraph recipe, first version

* Finalize madgraph recipe + flake8

* Make py2 version of madgraph default; fix hash for syscalc; fix patch

* Handle virtual packages (#3)

* Update package.py

* Update packages.yaml

* Remove virtual packages - pt. 1

* Remove virtual packages - pt. 2

* Changes from review - pt. 1

* Changes from code review - pt. 2

* Update var/spack/repos/builtin/packages/collier/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/madgraph5amc/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Add hash for version 2.7.2 (available in our private mirror)

* Fixes for 2.7.3 family

* Patches for 2.7.3{.py3,}{.atlas,}

* Fix hash of syscalc

* Hack to fix concretization (2.7.3 matches 2.7.3.py3)

* Add conflict statement (reported to devs)

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py

* Delete madgraph5amc-2.7.2.atlas.patch

* Delete madgraph5amc-2.7.2.patch

* Update package.py

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: iarspider <iarpsider@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-16 12:07:14 -05:00
Nithin Senthil Kumar
6ececa6976
New packages Mvapich2x and Mvapich2-GDR (#17883)
* Adding new packages Mvapich2x and Mvapich2-GDR which can be installed only via binary mirrors

* Added docstring descriptions to both packages

* Removed variant wrapper for cuda dependencies

* Fixed multiple flake8 errors

* Updated APIs to pass unit tests

* Updated APIs for MVAPICH2-X package and fixed flake8 warnings for MVAPICH2-GDR

* Changed url back to single line

* Removed extra parantesis around URL string

Co-authored-by: nithintsk <nithintsk@github.com>
2020-08-16 08:56:22 -05:00
vvolkl
46fb456b54
[root] add dataframe cmake option (#17962)
* [root] add dataframe cmake option

@chissg @HadrienG2  @drbenmorgan


This has been a separate cmake option starting v6-19 I believe: 31292b9082
It should default to true -- not sure why, but this recipe sets it to off.

I could add a variant too, but since it has become an integral part of root and doesn't introduce extra dependencies, I'd propose to just set it to true like I do here.

* Update package.py
2020-08-15 10:13:11 -05:00
Chuck Atkins
a6a5708c44
pugixml: add version 1.10, add option for shared libs (#18072) 2020-08-14 17:45:30 -07:00
Adam J. Stewart
9ab8521a1c
Python: add spack external find support (#16684) 2020-08-14 16:08:42 +02:00
Adam J. Stewart
512ef506a7
pkgconfig: add spack external find support (#16690) 2020-08-14 16:07:17 +02:00
Adam J. Stewart
c18167d01f
Autoconf: add spack external find support (#16692) 2020-08-14 16:06:26 +02:00
Adam J. Stewart
73fe3ce158
M4: add spack external find support (#16693) 2020-08-14 16:05:30 +02:00
darmac
f901947f69
bmake: fix compilation error and added v20200710 (#17956) 2020-08-14 11:32:06 +02:00
Adam J. Stewart
2430ac5b7c
GDAL: add spack external find support (#18004) 2020-08-14 08:59:34 +02:00
Adam J. Stewart
c27e82f0ac
gmake: add spack external find support (#18009) 2020-08-14 08:58:22 +02:00
Levi Baber
5eea09d43d
nextflow: added v20.07.1 (#18058) 2020-08-14 08:53:16 +02:00
Adam J. Stewart
be046d7341
Bazel: add spack external find support (#18008) 2020-08-14 08:48:49 +02:00
Adam J. Stewart
84a16e62d6
OpenGL: add spack external find support (#18003) 2020-08-14 08:48:11 +02:00
Adam J. Stewart
70419c752d
GMT: add spack external find support (#18007) 2020-08-14 08:44:32 +02:00
Robert Blake
bcae9e354b
Adding external package support for tar. (#18002)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-14 08:43:27 +02:00
Robert Blake
a9b1f22ba1
External package recognition for git. (#18010)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-14 08:42:53 +02:00
Adam J. Stewart
a14648ffd0
external packages: redirect stderr too (#18037) 2020-08-14 08:40:58 +02:00
Greg Sjaardema
8ade93d09d
NETCDF-C: added v4.7.4 (#18051) 2020-08-14 08:25:41 +02:00
Greg Sjaardema
4f14d67537
SEACAS: added v2020-05-12 and v2020-08-13 (#18053) 2020-08-14 08:25:06 +02:00
Jed Brown
fe718afaa5
ceed: fix @3.0.0 dependency on hypre@2.18.2 (#17983)
Co-authored-by: Veselin Dobrev <dobrev1@llnl.gov>
2020-08-14 08:18:58 +02:00
Adam J. Stewart
2dad0e5825
Matplotlib: added v3.3.1 (#18061) 2020-08-14 08:01:37 +02:00
Adam J. Stewart
32710f1f28
py-certifi: add v2020.6.20 (#18060) 2020-08-14 08:00:57 +02:00
Adam J. Stewart
35bba4223f
Bash: add v5.0.18, external package detection (#18062) 2020-08-14 08:00:25 +02:00
Kai Germaschewski
1d152a44fd
fix configure.ac/autotools issue that casues problems on RHEL 7.7 (#17465) 2020-08-13 16:20:05 -07:00
Jim Galarowicz
c0342e4152
Update the change to add gomp compatibity to llvm-openmp. (#17400)
* Update the change to add gomp compatibity to llvm-openmp.

* Update the change to add gomp compatibity to llvm-openmp using append instead of extend.

* Fix flake8 issue.

Co-authored-by: Jim Galarowicz <jgalarowicz@newmexicoconsortium.org>
2020-08-13 15:41:20 -05:00
Alicia Klinvex
8398265638
Add support for pFUnit version 4 (#17683)
* pFUnit: Added support for version 4

pFUnit v4 uses submodules, so we must fetch from the repo rather
than grabbing the tarball (see #11642).

* pFUnit: Added conflicts

pFUnit 4 causes an internal compiler error with gcc 7.2.0, and
several pFUnit versions are incompatible with shared libraries.

* pFUnit: Added conflicts for version 4

Verson 4 uses Fortran 2008 features and cannot be built with gcc
compilers prior to 8.4.

* pFUnit: Fixed conflicts/dependencies as suggested

* pFUnit: Version 4 no longer fetches from git

Checksummable files are fetched instead.

* pFUnit: Simplify major version check

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* pFUnit: Removed unnecessary patch for v4

The patch is still applied to v3.

* pFUnit: Modified MPI flag for v4

pFUnit v3 and v4 use different CMake flags to enable/disable MPI
support. Also added a conflict for v3 with MPI enabled using
gfortran 10, since newer gfortran is more finicky about datatypes.

* pFUnit: Rearranged mpi logic

* pFUnit: changed m4 to a build dependency

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* pFUnit: Added URL back

I did not realize it was needed by "spack versions" and
"spack checksum". Thanks @adamjstewart!

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-13 15:35:00 -05:00
Ganesh Kumar
3dfd99c57a
AMD ROCm Mathlibs (#17699)
* ROCm Mathlibs

* fixed the review comments

* fixed flake8 issues
2020-08-13 15:34:30 -05:00
Massimiliano Culpo
4a2136670d
gcc: improve detection functions (#17988)
* Don't detect Apple's clang as gcc@4.2.1
* Avoid inspecting links except for Cray platforms
* Always return string paths from compiler properties
* Improved name-based filtering (apt-based packages)
2020-08-13 12:17:02 -07:00
Nikolay Simakov
f61b14106a
IOR package: added 3.3.0rc1 and develop version (#18036)
* IOR package: added 3.3.0rc1 and develop version

* IOR package: reordered versions, set 3.2.1 as preferred
2020-08-13 13:28:50 -05:00
Harmen Stoppels
f5d3b82bcd
Make mpich buildable without fortran (#17964)
When the user explicitly sets ~fortran, mpich builds without fortran
support. This will make building C/C++ libraries using clang easier,
since clang does not offer a fortran compiler by default (yet).

Since the user has to disable Fortran support explicitly, this change
is not breaking.
2020-08-13 13:25:55 -05:00
Matt Larsen
29818fda00
update vtk-h release (#18052) 2020-08-13 09:30:32 -07:00
Massimiliano Culpo
ecf4829de7
llvm: added external detection capabilities (#17989)
* llvm: added external detection capabilities

* Added comment with reference to external package detection docs

* Fix typo in a comment
2020-08-13 09:03:09 -05:00
h-denpo
5512340a51
gotcha: fixed building v0.0.2 on ARM (#18012) 2020-08-13 08:16:23 +02:00
ketsubouchi
ae23f33a31
eztrace: add space, --linkfortran, -Wl (#17801) 2020-08-12 20:16:59 -05:00
Chris White
105caa7297
Axom + Conduit updates (#17863)
* Loosen Axom's variants, add shared variant for axom, fix clang/xlf rpath'ing problem on blueos

* Fix flake8

* Add main branch to list of known git branches
2020-08-12 20:15:59 -05:00
Massimiliano Culpo
fa216e5f15
mpich, mvapich2: fixed setup_*_environment (#18032)
fixes #18028

Since now external packages support multiple modules
the correct thing to do is to check if the name of the
*first* module to be loaded contains the string "cray"
2020-08-12 20:04:03 -05:00
Harmen Stoppels
075e9428a1
Make the build stage of OpenSSL parallel (#18024) 2020-08-12 19:58:36 -05:00
Erik Schnetter
3fbbf539d1
libpciaccess: New version 0.16 (#18035) 2020-08-12 19:57:00 -05:00
Erik Schnetter
c024a55da8
cmake: Add version 3.16.3 (#18034)
`cmake @3.16.3` is the version provided by Ubuntu 20.04. Adding this version here avoids the warning
```
==> Warning: Missing a source id for cmake@3.16.3
```
when using the system `cmake`.
2020-08-12 19:53:55 -05:00
srekolam
ad060c7870
Spack recipes for ROCm software components-Phase1 (#17422)
* Spack recipes for ROCm Stage 1 Build components

* fix flake8 errors

* fixes for flake8 errors

* Add a patch for cmake 3.x suport

* Fix rpath issue where hsa-rocr-dev does not allow it to be filled in by spack

* Remove inherited cmake args from comgr

* Make hsakmt-roct compile: no -Werror because with const cast in numa, and actually add the numa dependency

* Remove redundant cmake args which is inherited

* Fix some dependencies

* Fix some python 2.x compatibilities

* Add amd gpu targets to rocfft

* Make comgr a link dep of rocm-dbgapi and remove redundant cmake args

* Remove redundant cmake args

* Remove more redundant cmake args

* Final redundant args

* Use cmake 3.x instead of a fixed version

* Remove random variable

* Use installed rocclr instead of nonexisting directory

* Don't build outside the staging folder

* Deploy some missing cmake target file

* Formatting

* Fix target list

* Properly handle the rocclr dependency

* Formatting

* Fix vermin test

* Make all 3.5.0 package depend exactly on eachother

* Add a few missing link dependencies

* Fix flake8

* Remove some other redundant flags

* Add gcc install prefix for gcc builds of llvm-amdgpu

* review changes for the spack recipes

* Do not hard-code versions

* Fix atmi install

- no more relative rpaths outside of install directory (required patch)
- fix build -> link dependencies
- remove unused build dependency

* Fix flake8 errors

* Remove unused variable and make things python 2.x compatible

* Fix flake8

* Move compiler config from rocfft -> hipcc

* Remove redundant dependency on fftw-api

* Remove redundant import

* Avoid hitting the ROCM_PATH variable altogether with a patch; also just fill in all variables

* Add missing deps z3, zlib and ncurses+termlib to llvm-amdgpu

* Fix perl shebang and add dep

* Fix typo and patch HIP_CLANG_ROOT detection in hip's cmake files

* fixing build failure due z3 and adding zlib for rocgdb

* new changes to add z3,curses dependency for llvm-amdgpu

* fix flake8 error

Co-authored-by: root <root@localhost.localdomain>
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2020-08-12 19:36:35 -05:00
eugeneswalker
25a0d89b58
petsc: add explicit build dependency: diffutils (#17979) 2020-08-12 13:42:03 -07:00
Julien Loiseau
015ea82bd5
Update FleCSPH package (#17997)
* Update FleCSPH package

* Flake8 corrections

* Update FleCSI version
2020-08-12 11:49:30 -06:00
Robert Blake
b4ff584bc0
Adding externals support for CUDA. (#18011)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-08-12 19:30:57 +02:00
Jon Rood
193c3535e1
Use configure-release instead of configure for UCX (#17941)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-12 15:14:53 +02:00
Michele Martone
d1fae90f84
librsb: added v1.2.0.9 (#18015) 2020-08-12 14:09:49 +02:00
Andrew W Elble
de053ca2ea
weechat: added new package at v2.9 (#17996) 2020-08-12 14:09:09 +02:00
Ethan Stam
12aa6d221c
ParaView: added v5.8.1 (#17995) 2020-08-12 13:18:32 +02:00
Robert Blake
f73141c6af
Bugfix for #17999: use cudart instead of cuda. (#18000)
This is needed because libcuda is used by the driver,
whereas libcudart is used by the runtime. CMake searches
for cudart instead of cuda.

On LLNL LC systems, libcuda is only found in compat and
stubs directories, meaning that the lookup of libraries
fails.
2020-08-12 13:13:57 +02:00
Thomas Madlener
041e21802e
podio: added dependency on jinja2 for newer versions (#17990) 2020-08-12 08:56:11 +02:00