Commit graph

13848 commits

Author SHA1 Message Date
Adam J. Stewart
71ec2db3a9
Add new py-testscenarios package (#14032) 2019-12-07 15:39:24 -06:00
Adam J. Stewart
e77a557ca1
Add new py-testtools package (#14033) 2019-12-07 15:39:11 -06:00
Adam J. Stewart
cec03c2db4
Add new py-python-subunit package (#14028) 2019-12-07 15:38:56 -06:00
Quinn
1a662f428e Add New package feh and supporting packages (#14013)
* Adding libid3tag package for supporting feh

* Adding libexif package for supporting feh

* Adding imlib2 package for supporting feh

* Adding the feh package

* Rewording the cleanup function for libid3tag

* Fixing some flake8 issues for imlib2 and libid3tag

* Adding sources for the patches and swapping rm for os.remove

* Flake8 fixes

* swapping md5sums for sha256sums
2019-12-07 15:38:41 -06:00
Adam J. Stewart
a9f6caf863
Add new py-hacking package (#14027) 2019-12-07 14:04:06 -06:00
Adam J. Stewart
c88b95bd28
Add new py-fixtures package (#14026) 2019-12-07 14:03:41 -06:00
Adam J. Stewart
e78865b3ab
Add new py-extras package (#14025) 2019-12-07 14:03:06 -06:00
Adam J. Stewart
b6a6f28482
Add py-tox package (#14024) 2019-12-07 14:02:39 -06:00
Adam J. Stewart
9ece63242a
Add latest version of py-importlib-metadata (#14023) 2019-12-07 14:02:16 -06:00
Adam J. Stewart
31b45d40d9
flann: fix missing dependencies (#14022) 2019-12-07 14:01:39 -06:00
Christoph Junghans
969bc948b5 votca*: add v1.6_rc1 (#14017)
* votca*: add v1.6_rc1

* votca: prefer v1.5.1
2019-12-07 10:04:15 -06:00
Axel Huebl
15bb5da99f openPMD-api: 0.10.1 (#14018)
Add the latest release of openPMD-api.
2019-12-07 10:02:53 -06:00
Axel Huebl
d705e96a63
Spec Header Dirs: Only first include/ (#13991)
* CUDA HeaderList: Unit Test

* Spec Header Dirs: Only first include/

Avoid matching recurringly nested include paths that usually
refer to internally shipped libraries in packages.
Example in CUDA Toolkit, shipping a libc++ fork internally
with libcu++ since 10.2.89:
`<prefix>/include/cuda/some/more/details/include/` or
`<prefix>/include/cuda/std/detail/libcxx/include`

regex: non-greedy first match of include

Co-Authored-By: Massimiliano Culpo <massimiliano.culpo@gmail.com>

* CUDA: Re-Enable 10.2.89 as Default
2019-12-06 23:47:03 -08:00
Mark W. Krentel
9d9737f765 ibm-java: add version 8.0.6.0 (#14003)
* ibm-java: add version 8.0.6.0

Add version 8.0.6.0 and remove 8.0.5.30.  IBM is fairly aggressive
about removing old versions, and 8.0.5.30 is no longer available from
their download site.

* Restore version 8.0.5.30, although it is no longer available for
download from IBM.
2019-12-06 18:11:24 -06:00
Francesco Di Natale
01d35a4f3b Packages/py-maestrowf (#14010)
* Addition of repository branches to maestrowf.

* Addition of 1.1.5dev pre-release.

* Correction of a merge conflict.

* Addition of Maestro release 1.1.5

* Addition of Maestro release 1.1.6 (removal of 1.1.5)

* Sets 1.1.6 to the preferred version.

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Tweak to the url to point to latest.
2019-12-06 18:10:58 -06:00
Adam J. Stewart
66a169e2a5
Add py-parameterized package (#14016) 2019-12-06 18:09:00 -06:00
Adam J. Stewart
350a5422ed
Update py-theano dependencies (#14015) 2019-12-06 18:08:34 -06:00
nicolas le goff
d173ec6a35 mesquite: fix build of the no mpi variant. (#14012)
* mesquite: fix build of the no mpi variant.

* mesquite: added the --without-mpi option to configure.
2019-12-06 18:08:13 -06:00
Tamara Dahlgren
842e9d9375 docs: Alphabetize create cmd template options (#13993)
* Bugfix: Display template options for create command.

* Alphabetize "spack create" template options for readability

* Revert template choices format; alphabetize list

* flake8 fix
2019-12-06 18:07:45 -06:00
Greg Becker
99c9365974 Bugfix: spack find -p fails in environment (#13972)
* force spack find -p to print abstract specs without prefixes
* hashes have the same issue; improve handling of find -L to match find -l
2019-12-06 12:29:57 -08:00
Teodor Nikolov
65a292fbbf [Package: HPX] Fix Apex and OTF2 support (#13982)
* Fix Apex and OTF2 support

- Comment out apex as a dependncy: it is bundled with HPX.
- Apply a patch to v1.3.0 to correctly build with APEX.
- Add otf2 as a dependency when APEX is enabled.

* Remove depends_on('apex')
2019-12-06 12:41:55 -06:00
t-karatsu
06042ec7ec augustus: Set compile commands for each compiler and Fix for using 'boost' on Spack (#13975)
* augustus: Set compile commands for each compiler and Fix for using 'boost' on Spack

* fix for flake8

* delete 'string' args

* Fix args of filter_file func

* Fix args of other filter_file func
2019-12-06 12:39:23 -06:00
Galen Shipman
5d523dd689 Add patch to fix issue building current llvm develop master on power9 (#13986)
* Add patch to fix issue building current llvm develop master on power9

* Conform to proper block commenting

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-12-06 12:38:58 -06:00
Tamara Dahlgren
dd26cc4004 Fastmath: Added required version (#13990)
* Fastmath: Added required version

* Changed the version to 'latest' (per balay).
2019-12-06 12:38:29 -06:00
Tamara Dahlgren
5e49b76dd7 Ceed: Added required version (#14006) 2019-12-06 12:38:00 -06:00
t-karatsu
246799d4ce sz: Change optimization flags for Fujitsu compiler (#14007) 2019-12-06 12:05:16 -06:00
Paul
67e45096c8 Specify self for internal setup method (#14008) 2019-12-06 12:04:57 -06:00
Brian Homerding
5e20bd86e4 Convert llvm Spackage to use the monorepo (#11392)
* [WIP] Convert llvm spackage to use the monorepo

* Correcting python dependencies

* Adding develop version for llvm monorepo

* Python 2.6 Fix

* Build Flang fork in a different root_cmakelists_dir

* Formatting Fix

* Including flang package changes

* Removing explicit llvm dependencies variants

* flake8 fix

* Updating patches and llvm+flang logic

* Updating env setup API

* Add top level git

* Conflicting flang variant with other variants
2019-12-06 12:01:30 -06:00
Seth R. Johnson
f069a3feda Add h5sh python package (#14001)
* Add h5sh package

* Fix requirements and update version
2019-12-06 11:58:59 -06:00
Tamara Dahlgren
b0f59484d3 docs: Minimal BundlePackage build system doc (#13992)
* Minimal BundlePackage build system doc

* Add link to new bundlepackage file

* Fixed link bug and added create command example
2019-12-06 07:26:59 -08:00
Mark W. Krentel
f84ad57fe7 hpcviewer: add version 2019.09 (#14004)
Add version 2019.09.  Adjust the iteration through versions to
eliminate the need for version_list.
2019-12-05 18:59:30 -06:00
Dominik Dold
c3eafde7bf Add new TensorFlow package (#13112)
* add tensorflow

Change-Id: Id778c68d148cc42f0b478a9d10a8f937cb54cdc6

* make bazel and tensorflow build

Change-Id: Iae9005e8f4dcc8f1ed36ea9337d2430aeebb291f

* fix flake8

Change-Id: Ib05529dd796eab4a8855a5d7775cc4efea8e479d

* 2nd flake8 attempt

Change-Id: I46224be3a374b2a65793048b0c5178ea64adbd78

* replace md5 sums with sha256

* add version 1.13.2

* bazel() -> bazel('build',...

* specify versions of bazel dependency

* build with CUDA

* add TODOs

* add more todo"s

* improve enum34 dependency

* py-future is a dependency as of v1.14

* Update var/spack/repos/builtin/packages/tensorflow/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/tensorflow/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/tensorflow/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/tensorflow/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* enable nccl, cuda by default

* explain patches

* add todo

* remove unnecessary copt_flag

* use join

* join argument must be an iterable

* split long line; use same opts for non-cuda build

* without opt flags, configure hangs

* introduce build phases; re-arrange

* undo mistake

* restore unset tmp_path

* as of v1.14, nccl_install_path is parsed correctly, hence change ...prefix.lib to ...prefix

* now, version 1.14 compiles successfully with cuda

* add version 2.1.0

* specify bazel dependency for version 2.1.0-rc0

* account for deprecated bazel opts for v2.1.0-rc0

* disable mkldnn contraction kernel

* Flake8 fixes

* md5 -> sha256

* Fix TF and TF-estimator version deps

* Don't just comment out patch

* Add myself as a maintainer

* Patch py-astor to support newer py-setuptools

* Add more versions and bazel version constraints

* Add a build phase

* Add note about configure interactivity

* dev-build -> build-env

* Disable iOS build

* Use correct optimization flags

* Add variants for all possible features

* nccl isn't always a dependency

* Specify correct dependency versions for each release

* Libs may not be in lib or lib64

* Add py-opt-einsum package

* Add newer version of py-protobuf

* Add newer version of py-wrapt

* Fix Python 2.6 syntax error

* Code review

* Set more env vars for older versions

* Add more env vars, fix bazel versions, add conflicts

* Fix config options

* Specify version that support --config args

* Add py-future dependency for Python 2

* Fix cuda config flag and compute capabilities

* Fix installation on macOS, add unit tests

* Override cuda variant default to True on non-macOS

* Rename tensorflow to py-tensorflow

* Has to extend something

* Fix os.symlink call

* convert cuda_arc values to capabilities

* restore nccl prefix path for v1.13.1

* Revert to v2

* Remove extraneous period

* Add new version of jdk/openjdk

* More stable cuda_arch formatting

* Fix bazel unit tests

* Fix symlinking

* Fix unit tests

* +gcp by default until build error figured out
2019-12-05 18:48:20 -06:00
Scott Wittenburg
a288449f0b cdash: fix reporting issue with python 3 2019-12-05 11:37:03 -07:00
Chuck Atkins
831133a4c3 paraview: Adjust python version constraints (#13999)
py-matplotlib: No constraint necessary for py3 but py2 has an upper bound
py-numpy: No constraint necessary for py3 but py2 has an upper bound
2019-12-05 12:06:47 -06:00
Paul
9a0b1b6aef Added go 1.13.5 and 1.12.14 (#13997) 2019-12-05 11:29:00 -06:00
Chuck Atkins
fcc9a668bf py-pillow: allow older versions to build with python 3.4 (#14000) 2019-12-05 11:27:33 -06:00
Christoph Junghans
2da2fc8bc5
eospac: fix url (#13998) 2019-12-05 09:30:35 -07:00
Alexander Knieps
dbdc6c4a68 New package: swipl (#13978)
* New package: swipl

* Removed boilerplate, added maintainer

* Fixed python 2 incompatibility

* Update var/spack/repos/builtin/packages/swipl/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* swipl: Added conflict with intel compiler
2019-12-05 09:51:38 -06:00
Peter Scheibel
e9ee9eaf50 patching: do strict version range checking (#13989)
* apply strict constraint checks for patches, otherwise Spack may incorrectly treat a version range constraint as satisfied when mixing x.y and x.y.z versions
* add mixed version checks to version comparison tests
2019-12-04 22:27:08 -08:00
Todd Gamblin
55ee2aecdf v0.13.2
This release contains major performance improvements for Spack environments, as well as some bugfixes and minor changes.
 
 * allow missing modules if they are blacklisted (#13540)
 * speed up environment activation (#13557)
 * mirror path works for unknown versions (#13626)
 * environments: don't try to modify run-env if a spec is not installed (#13589)
 * use semicolons instead of newlines in module/python command (#13904)
 * verify.py: os.path.exists exception handling (#13656)
 * Document use of the maintainers field (#13479)
 * bugfix with config caching (#13755)
 * hwloc: added 'master' version pointing at the HEAD of the master branch (#13734)
 * config option to allow gpg warning suppression (#13744)
 * fix for relative symlinks when relocating binary packages (#13727)
 * allow binary relocation of strings in relative binaries (#13724)
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Merge tag 'v0.13.2' into develop

v0.13.2

This release contains major performance improvements for Spack environments, as well as some bugfixes and minor changes.

* allow missing modules if they are blacklisted (#13540)
* speed up environment activation (#13557)
* mirror path works for unknown versions (#13626)
* environments: don't try to modify run-env if a spec is not installed (#13589)
* use semicolons instead of newlines in module/python command (#13904)
* verify.py: os.path.exists exception handling (#13656)
* Document use of the maintainers field (#13479)
* bugfix with config caching (#13755)
* hwloc: added 'master' version pointing at the HEAD of the master branch (#13734)
* config option to allow gpg warning suppression (#13744)
* fix for relative symlinks when relocating binary packages (#13727)
* allow binary relocation of strings in relative binaries (#13724)
2019-12-04 22:04:36 -08:00
Todd Gamblin
fe4ccdd555
update CHANGELOG.md for 0.13.2 2019-12-04 22:02:41 -08:00
Adam J. Stewart
ad5d612925
Add py-matplotlib 3.1.2 (#13994) 2019-12-05 00:00:20 -06:00
Todd Gamblin
b3d6eb79f5
Merge branch 'releases/v0.13' into develop 2019-12-04 21:41:41 -08:00
Todd Gamblin
3fee65cb92
version bump: 0.13.2 2019-12-04 21:36:42 -08:00
Todd Gamblin
46b68263d8
version bump: 0.13.2 2019-12-04 21:20:09 -08:00
Peter Scheibel
03a5771b9d
Bugfix: allow missing modules if they are blacklisted (#13540)
`spack module loads` and `spack module find` previously failed if any upstream modules were missing.  This prevented it from being used with upstreams (or, really, any spack instance) that blacklisted modules.

This PR makes module finding is now more lenient (especially for blacklisted modules).

- `spack module find` now does not report an error if the spec is blacklisted
  - instead, it prints a single warning if any modules will be omitted from the loads file
  - It comments the missing modules out of the loads file so the user can see what's missing
  - Debug messages are also printed so users can check this with `spack -d...`

- also added tests for new functionality
2019-12-04 20:55:50 -08:00
Axel Huebl
ba156dfcd8 CUDA: Keep 10.1.243 As Preferred (#13983)
Keep CUDA 10.1.243 as the preferred version until the issue
of including implementation details of libcu++ is addressed.
2019-12-04 21:28:10 -06:00
Peter Scheibel
e5f04f9abc Bugfix: allow missing modules if they are blacklisted (#13540)
`spack module loads` and `spack module find` previously failed if any upstream modules were missing.  This prevented it from being used with upstreams (or, really, any spack instance) that blacklisted modules.

This PR makes module finding is now more lenient (especially for blacklisted modules).

- `spack module find` now does not report an error if the spec is blacklisted
  - instead, it prints a single warning if any modules will be omitted from the loads file
  - It comments the missing modules out of the loads file so the user can see what's missing
  - Debug messages are also printed so users can check this with `spack -d...`

- also added tests for new functionality
2019-12-04 19:17:40 -08:00
Adam J. Stewart
ba7ac53b75
Fix spack test when SPACK_ROOT isn't set (#13980) 2019-12-04 18:05:08 -06:00
Stephen Hudson
e0e9fb4462 Update libensemble to v0.6.0 (#13987) 2019-12-04 18:01:05 -06:00