George Young
70a38ea1c5
plink2: add new package @2.00a4.3 ( #38469 )
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Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-07-04 04:09:45 -04:00
Adam J. Stewart
5bd7a0c563
spack make-installer: deterministic choice order ( #38706 )
2023-07-04 09:39:38 +02:00
Adam J. Stewart
33c5959e23
Remove from __future__ imports ( #38703 )
2023-07-04 08:30:29 +02:00
Manuela Kuhn
65288566e5
py-numpydoc: add 1.5.0 ( #38701 )
2023-07-03 22:13:54 -04:00
Manuela Kuhn
5e1c4693fd
py-ruff: add 0.0.276 ( #38702 )
2023-07-03 21:59:14 -04:00
Aditya Bhamidipati
feb4681878
Add NCCL v2.18.3-1 release to recipe ( #38647 )
2023-07-03 16:26:07 -05:00
Thomas Bouvier
994b5ad49e
ffmpeg: patch build failure (#38656 )
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* `ffmpeg`: patch build failure
* [@spackbot] updating style on behalf of thomas-bouvier
---------
Co-authored-by: thomas-bouvier <thomas-bouvier@users.noreply.github.com>
2023-07-03 11:12:26 -07:00
Harmen Stoppels
4654db54c7
hdf5-vol-log: depends on mpi ( #38693 )
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From the configure.ac file:
> H5VL_log is built on top of MPI. Configure option --without-mpi or
> --with-mpi=no should not be used. Abort.
This currently fails to build in the oneAPI pipeline on `develop`
2023-07-03 20:08:40 +02:00
Adam J. Stewart
a6ebff3a2e
py-pillow: add v10.0.0 ( #38670 )
2023-07-03 11:02:24 -07:00
Ashwin Kumar Karnad
6e8fb30b83
Add hash for octopusV13 ( #38655 )
2023-07-03 10:24:52 -07:00
Cyrus Harrison
465f83b484
add ascent 0.9.2 release ( #38661 )
2023-07-03 10:14:01 -07:00
Harmen Stoppels
ba7ae2c153
Drop requirement of python@3.7 since it's deprecated ( #38692 )
2023-07-03 16:15:32 +02:00
Jonathon Anderson
54adab7eac
python: require xz libs=shared when +lzma ( #38593 )
2023-07-03 07:11:30 -05:00
Andrey Parfenov
30cb55e97c
add support for oneapi compiler to wrf 4.4 ( #38607 )
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Signed-off-by: Andrey Parfenov <andrey.parfenov@intel.com>
2023-07-03 07:34:06 -04:00
Harmen Stoppels
3594203f64
guile: fix %oneapi fast math madness ( #38691 )
2023-07-03 13:25:55 +02:00
Adam J. Stewart
f0add2428c
dbus: AutotoolsPackage, optional documentation build ( #38679 )
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Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2023-07-03 04:18:00 -04:00
Adam J. Stewart
af449b7943
qt-base: disable accessibility by default ( #38680 )
2023-07-03 09:45:22 +02:00
Adam J. Stewart
b6d591e39b
bash: adam now uses fish ( #38684 )
2023-07-03 02:44:44 -05:00
Adam J. Stewart
3811dec18d
Deprecate conda for Python 2 ( #38681 )
2023-07-03 09:44:20 +02:00
Adam J. Stewart
ae2efa1c27
xmlto: fix missing dependency on util-linux ( #38678 )
2023-07-03 09:43:18 +02:00
John Biddiscombe
acdcc8ed71
Add support to Paraview for TBB ( #38582 )
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Co-authored-by: Jean Favre <jfavre@cscs.ch>
2023-07-03 09:33:56 +02:00
Jack Morrison
11bc27d984
Add libfabric 1.18.1 release ( #38669 )
2023-07-02 13:39:20 -07:00
Adam J. Stewart
4d5ff045e3
Deprecate Python 3.7 ( #38619 )
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* Deprecated Python 3.7
* Add Python 3.7.17 because why not
2023-07-02 11:29:35 -05:00
Adam J. Stewart
63576275be
SIPPackage: documentation fix ( #38672 )
2023-07-02 11:30:08 +02:00
Harmen Stoppels
cc74729115
Revert "openblas: do not build tests when installing ( #38591 )" ( #38662 )
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This reverts commit 51c75c6da3
2023-07-01 22:02:39 -04:00
dependabot[bot]
a864108bc1
build(deps): bump docker/setup-buildx-action from 2.7.0 to 2.8.0 ( #38625 )
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Bumps [docker/setup-buildx-action](https://github.com/docker/setup-buildx-action ) from 2.7.0 to 2.8.0.
- [Release notes](https://github.com/docker/setup-buildx-action/releases )
- [Commits](ecf95283f0...16c0bc4a6e
2023-07-01 10:57:26 -07:00
Tamara Dahlgren
4aed051b73
openrasmol: convert to new stand-alone test process ( #38630 )
2023-07-01 10:55:20 -07:00
Jochen Klein
43996e84c3
icarus: add v11_0 and v12_0 ( #38666 )
2023-07-01 10:38:09 -07:00
Harmen Stoppels
14ebf1985e
mercurial: add 6.x, fix python bounds ( #38668 )
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* mercurial: add 6.x, fix python bounds
* remove python@2 versions, cause package audits is complaining
2023-07-01 12:49:49 +02:00
Robert Cohn
0c2b98ca70
[intel-oneapi-mkl] add openmpi support for +cluster ( #38554 )
2023-06-30 18:38:40 -04:00
Jonathon Anderson
43143b134a
New package: pipx ( #38658 )
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* py-userpath: new package
* pipx: new package
* Update var/spack/repos/builtin/packages/pipx/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* pipx: Remove incorrect dependency on py-platformdirs
* Update var/spack/repos/builtin/packages/pipx/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* py-userpath: Remove version requirements to match upstream
---------
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-06-30 16:42:57 -05:00
Chris Green
45697582dc
[py-onnx-runtime] Remove package superseded by py-onnxruntime ( #37392 )
2023-06-30 16:42:12 -05:00
David Boehme
9a214ffb75
Add Caliper variant in hypre package ( #38651 )
2023-06-30 15:46:18 -05:00
Tamara Dahlgren
4286c7398b
tests/petsc: convert to new stand-alone test process ( #38652 )
2023-06-30 15:36:41 -05:00
Tamara Dahlgren
131acbdacc
tests/slepc: convert to new stand-alone test process ( #38653 )
2023-06-30 15:34:42 -05:00
Adam J. Stewart
86d2399c76
Remove deprecated versions and packages ( #37895 )
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This PR removes deprecated versions for all packages that I'm maintaining. In future Spack releases, I'm planning to do this on a much larger scale, but we can hold off until we have better reproducibility.
I'm hoping that this will improve the maintainability of these packages. If any other maintainers of these recipes would like to retain any of these deprecated versions, or add new versions, speak now or forever hold your peace 😄
---------
Co-authored-by: adamjstewart <adamjstewart@users.noreply.github.com>
2023-06-30 12:29:45 -07:00
Adam J. Stewart
d89d6dab6d
Python: add new versions ( #38620 )
2023-06-30 14:38:11 -04:00
Dan Lipsa
e6c94e9126
XZ package (Windows): install .dll files in bin ( #35888 )
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Windows runtime library loading searches PATH, and therefore bin/ is
the appropriate place to put .dll files. Prior to this change, XZ was
installing both .dll and .lib files to the lib/ directory.
2023-06-30 10:10:18 -07:00
Scott Wittenburg
af5b93bb97
gitlab ci: reorganize when we check for specs on mirrors ( #38626 )
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Move the logic checking which mirrors have the specs we need closer
to where that information is needed. Also update the staging summary
to contain a brief description of why we scheduled or pruned each
job. If a spec was found on any mirrors, regardless of whether
we scheduled a job for it, print those mirrors.
2023-06-30 10:18:16 -06:00
Tamara Dahlgren
dc25da1931
tests/pythons: convert to new stand-alone test process ( #38340 )
2023-06-30 05:52:42 -04:00
Chris White
067e40591a
Py-shroud: add version 0.12.2 ( #38643 )
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* add py-shroud version
* change version number based on advice of adamjstewart
2023-06-29 23:43:08 -04:00
mschouler
483688580e
py-iterative-stats: Change maintainer, add new version ( #38609 )
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* Change maintainer, add new version and deprecate old one
* Fix style issue
* Revert deprecation
---------
Co-authored-by: Marc Schouler <marc.schouler@inria.fr>
2023-06-29 21:06:43 -05:00
Thomas Bouvier
7448acaf98
py-nvidia-dali: add v1.27.0 (#38605 )
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* `py-nvidia-dali`: add v1.27.0
* Style
2023-06-29 20:47:41 -05:00
Adam J. Stewart
dfe2d5dca2
py-scipy: add v1.11.1 ( #38635 )
2023-06-29 18:38:48 -04:00
kwryankrattiger
b980fcff64
CI: Disable building VisIt in CI ( #38642 )
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VisIt requires a deprecated version of Python (3.7) due to a VTK 8
dependency. Spack CI does not support building deprecated versions.
2023-06-29 17:33:40 -05:00
Adam J. Stewart
b405559e7b
py-pandas: add v2.0.3 ( #38636 )
2023-06-29 14:13:23 -04:00
Sébastien Valat
7c5e3ddac5
numaprof: New package (version : 1.1.4) ( #35271 )
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* numaprof: New package (version : 1.1.4)
* numaprof: Improve the deps description by adding 'type'
* numaprof: Fix maintainer semantic
2023-06-29 09:19:39 -07:00
Annop Wongwathanarat
6ffc11c46d
relion: use patch from github for relion 4.0 ( #38432 )
2023-06-29 05:14:37 -04:00
Adam J. Stewart
a45d129f86
py-rasterio: add v1.3.8 ( #38621 )
2023-06-28 22:48:44 -05:00
eugeneswalker
3ccc527d74
py-pykerberos: needs krb5 for build to determine link and cflags via krb5-config binary ( #38623 )
2023-06-28 18:23:50 -04:00
