Commit graph

2186 commits

Author SHA1 Message Date
Adam J. Stewart
6eed279fce Don't duplicate spack test in spack help (#2837) 2017-01-16 14:56:38 -08:00
George Hartzell
aa3cc0ea81 Add lmod support for spack module loads (#2758)
The `spack module loads` command only supported tcl and dotkit.
This adds support for lmod.
2017-01-16 03:25:39 -08:00
becker33
a091eeceab Parser fix (#2769)
* Fixed parser to eliminate need for escape quotes. TODO: Fix double call to shlex, fix spaces in spec __str__

* Fixed double shlex

* cleanup

* rebased on develop

* Fixed parsing for multiple specs; broken since #360

* Revoked elimination of the `-` sigil in the syntax, and added it back into tests

* flake8

* more flake8

* Cleaned up dead code and added comments to parsing code

* bugfix for spaces in arguments; new bug found in testing

* Added unit tests for kv pairs in parsing/lexing

* Even more flake8

* ... yet another flake8

* Allow multiple specs in install

* unfathomable levels of flake8

* Updated documentation to match parser fix
2017-01-15 19:17:54 -08:00
Adam J. Stewart
f480e3449e Added customization for make targets in 'build' and 'install' phases for CMakePackage (#2742)
* Added customization for make targets in 'build' and 'install' phases for CMakePackage

* Use rst in build system docs so that Sphinx generates nice API docs

* Allow AutotoolsPackages to be built in a different directory

* Flake8

* Fix missing import

* Allow configure to be located in different directory

* Update espressopp to use build targets

* Flake8

* Sphinx fix, lists must be a new paragraph

* Back out change that allowed a configure script in a different directory than build_directory

* Add missing deps, build in parallel

* Missing space for rst list
2017-01-15 16:23:16 -08:00
Adam J. Stewart
f2d4c15395 Remove cmake build dep from CMakePackages (#2684) 2017-01-15 03:18:52 -08:00
Todd Gamblin
0d367bbd20 Add a test to exercise non-buildable external packages. (#2833) 2017-01-15 02:37:20 -08:00
becker33
677623962e Fixed find -lp command (coloring was broken) (#2820) 2017-01-15 02:36:36 -08:00
Massimiliano Culpo
436f6a4ab6 get_std_cmake_args delegates to CMakePackage._std_args fixes #2665 (#2805) 2017-01-15 02:34:15 -08:00
Massimiliano Culpo
cd511791d1 configure and build command: fix the stop iteration semantics
- broke somewhere between bdf4832269 (#2810) and 17b13b161b
2017-01-12 09:11:48 -08:00
Massimiliano Culpo
de2cb864fa mirror: fix error for some specs during concretization (#2806) 2017-01-11 07:38:22 -08:00
Todd Gamblin
f5557b5723 Change nargs='*' to argparse.REMAINDER for constraint options. (#2798) 2017-01-10 12:25:41 -08:00
Elizabeth Fischer
402dfe30f9 Get Rid of nobuild, nolink, and alldeps (#2765)
* Removing the nobuild, nolink, and alldeps dependency types in favor of being explicit.
* This will help with maintenance going forward, as adding more dependency types won't affect existing declared dependencies in weird ways.
* default deptype is still `('build', 'link')`
2017-01-07 19:59:02 -08:00
Adam J. Stewart
daff3c0908 Preliminary RPackage class (#2761) 2017-01-07 16:28:52 -08:00
Axel Huebl
05d77917fd GitLab: Tarball Version Test (#2296)
* GitLab: Tarball Version Test

Upload a test demonstrating #2290

* Add GitLab parsing
2017-01-06 08:53:19 -08:00
Mario Melara
3d54c3c689 Correct env vars for modulecmd; Fixes #1481 (#2745)
Don't override MODULEPATH with PATH, PATH has no modulefiles

PEP8 compliance
2017-01-05 11:15:38 -08:00
Massimiliano Culpo
9271c69b5d test: fixed 'refresh_builtin_mock' fixture (#2748) 2017-01-05 10:25:24 -08:00
Elizabeth Fischer
3dd4a01a5e Standardize package names: lower-case, not Mixed_CASE (#2475)
* Rename packages

* Upcasing depends_on() in packages.

* Downcased extends('r')

* Fixed erroneously changed URL that had slipped through.

* Fixed typo

* Fixed link from documentation into package source code.

* Fixed another doc problem.

* Changed underscores to dashes in package names.

* Added test to enforce lowercase, no-underscore naming convention.

* Fix r-xgboost

* Downcase more instances of 'R' in package auto-creation.

* Fix test.

* Converted unit test packages to use dashes not underscores

* Downcase `r` in the docs.

* Update module_file_support.rst

Fix r->R for class R.
2017-01-04 18:24:07 -08:00
Todd Gamblin
d32d5e45fb Fix issues when a package provides the same vdep twice. (#2710)
* Fix issues when a package provides the same vdep twice.

- provides() now adds to a set of provided vdeps instead of a single one.

* flake8
2017-01-02 18:40:57 -08:00
Todd Gamblin
b9ec69dce1 Disallow vdeps in packages.yaml (#2699)
* Consolidate packages.yaml code to preferred_packages

* Add validation check and a test for packages.py parsing.

* flake8
2016-12-31 08:12:38 -08:00
Adam J. Stewart
8cb54a9a67 Fix missing debug parameter for parse_version() (#2696) 2016-12-30 22:52:49 -08:00
Todd Gamblin
c88df5819d Fix test command arg handling. 2016-12-30 17:18:19 -08:00
Michael Kuhn
a42f340d37 Allow setting default variants (#2644) 2016-12-30 14:11:39 -08:00
Todd Gamblin
972a277956 Fix Python issue with build failures; Add test case for build failures. (#2687) 2016-12-30 11:37:50 -08:00
Todd Gamblin
5fbab1f4b5 Concretize preserves deptypes (#2681)
Concretization preserves deptypes
2016-12-29 14:43:59 -08:00
Todd Gamblin
d6390c159f Fix issues related to the switchover to pytest. (#2685)
- Remove stale reference to `import nose` from `bin/spack` script.
- Add `py` to externals (missing dependency for `pytest`)
2016-12-29 11:59:45 -08:00
Massimiliano Culpo
7ea10e768e unit tests: replace nose with pytest (#2502)
* Porting: substitute nose with ytest

This huge commit substitutes nose with pytest as a testing system. Things done here:

* deleted external/nose as it is no longer used
* moved mock resources in their own directory 'test/mock/'
* ported two tests (cmd/find, build_system) to pytest native syntax as an example
* build_environment, log: used monkeypatch instead of try/catch
* moved global mocking of fetch_cache to an auto-used fixture
* moved global mocking from test/__init__.py to conftest.py
* made `spack test` a wrapper around pytest
* run-unit-tests: avoid running python 2.6 tests under coverage to speed them up
* use `pytest --cov` instead of coverage run to cut down testing time

* mock/packages_test: moved mock yaml configuration to files instead of leaving it in the code as string literals

* concretize.py: ported tests to native pytest, reverted multiprocessing in pytest.ini as it was creating the wrong report for coveralls

* conftest.py, fixtures: added docstrings

* concretize_preferences.py: uses fixtures instead of subclassing MockPackagesTest

* directory_layout.py: uses fixtures instead of subclassing MockPackagesTest

* install.py: uses fixtures instead of subclassing MockPackagesTest

* optional_deps.py: uses fixtures instead of subclassing MockPackagesTest

optional_deps.py: uses fixtures instead of subclassing MockPackagesTest

* packages.py: uses fixtures instead of subclassing MockPackagesTest

* provider_index.py: uses fixtures instead of subclassing MockPackagesTest

* spec_yaml.py: uses fixtures instead of subclassing MockPackagesTest

* multimethod.py: uses fixtures instead of subclassing MockPackagesTest

* install.py: now uses mock_archive_url

* git_fetch.py: uses fixtures instead of subclassing MockPackagesTest

* hg_fetch.py: uses fixtures instead of subclassing MockPackagesTest

* svn_fetch.py, mirror.py: uses fixtures instead of subclassing MockPackagesTest
repo.py: deleted

* test_compiler_cmd.py: uses fixtures instead of subclassing MockPackagesTest

* cmd/module.py, cmd/uninstall.py: uses fixtures instead of subclassing MockDatabase

* database.py: uses fixtures instead of subclassing MockDatabase, removed mock/database

* pytest: uncluttering fixture implementations

* database: changing the scope to 'module'

* config.py: uses fixtures instead of subclassing MockPackagesTest

* spec_dag.py, spec_semantics.py: uses fixtures instead of subclassing MockPackagesTest

* stage.py: uses fixtures instead of subclassing MockPackagesTest. Removed mock directory

* pytest: added docstrings to all the fixtures

* pytest: final cleanup

* build_system_guess.py: fixed naming and docstrings as suggested by @scheibelp

* spec_syntax.py: added expected failure on parsing multiple specs closes #1976

* Add pytest and pytest-cov to Spack externals.

* Make `spack flake8` ignore externals.

* run-unit-tests runs spack test and not pytest.

* Remove all the special stuff for `spack test`

- Remove `conftest.py` magic and all the special case stuff in `bin/spack`

- Spack commands can optionally take unknown arguments, if they want to
  handle them.

- `spack test` is now a command like the others.

- `spack test` now just delegates its arguments to `pytest`, but it does
  it by receiving unknown arguments and NOT taking an explicit
  help argument.

* Fix error in fixtures.

* Improve `spack test` command a bit.

- Now supports an approximation of the old simple interface
- Also supports full pytest options if you want them.

* Use external coverage instead of pytest-cov

* Make coverage use parallel-mode.

* change __init__.py docs to include pytest
2016-12-29 07:48:48 -08:00
Elizabeth Fischer
88f57d7543 Allow exclusion of packages from spack module loads (#2667)
* Allow exclusion of packages from `spack module loads`

* Comment out excluded packages instead of not showing them at all.
2016-12-28 13:31:18 -08:00
Massimiliano Culpo
17b13b161b Directive inheritance: laziness for the win (#2623)
* inheritance of directives: using meta-classes to inject attributes coming from directives into packages + lazy directives

* _dep_types -> dependency_types
* using a meta-class to inject directives into packages
* directives are lazy

fixes #2466

* directives.py: allows for multiple inheritance. Added blank lines as suggested by @tgamblin

* directives.py: added a test for simple inheritance of directives

* Minor improvement requested by @tgamblin

CMakePackage: importing names from spack.directives
directives: wrap __new__ to respect pep8

* Refactoring requested by @tgamblin

directives: removed global variables in favor of class variables. Simplified the interface for directives (they return a callable on a package or a list of them).
2016-12-28 12:37:02 -08:00
Adam J. Stewart
29bac34c1d Ensure that every file in Spack has a license (#2659)
* Ensure that every package has a license

Also fixes URLs with http://http:// doubled.

This is a continuation of #2656.

* Add license to every file in Spack

* Make sure Todd is the author of all packages

* Fix flake8 tests

* Don't license external Sphinx docs

* Don't display licenses in tutorial example packages

Also fixes typos and converts command-line examples
from tcsh to bash, which is more common
2016-12-27 00:17:12 -08:00
Adam J. Stewart
f34c5367d5 Better tabulation for spack checksum (#2673) 2016-12-25 19:25:53 -08:00
Denis Davydov
91bfebbed8 filter_system_path: additionally filter system prefixes (#2672)
That's because in set_build_environment_variables()
the funciton filter_system_paths() is actually applied to
package prefixes, and not to prefix/lib or prefix/include.
2016-12-25 19:24:56 -08:00
Todd Gamblin
c4afaabea9 Add argument to spack spec to show deptypes. (#2680)
- `-t` | `--types` argument now shows deptypes in `spack spec`
2016-12-25 14:15:58 -08:00
Adam J. Stewart
7e8767e3fd Remove usernames from paths in docs (#2675)
* Remove usernames from paths in docs

* Fix path export
2016-12-25 12:36:35 -08:00
Adam J. Stewart
c3cd948537 Modify github archive regex to support luaposix (#2677) 2016-12-25 12:32:19 -08:00
scheibelp
3f1cdbf5ef Revert #2292: use frontend compiler for build deps (#2549)
The primary goal of #2292 was to use the frontend compiler to make
build dependencies like cmake on HPC platforms. It turns out that
while this works in some cases, it did not handle cases where a
package was a link dependency of the root and of a build dependency
(and could produce incorrect concretizations which would not build).
2016-12-20 00:21:25 -08:00
Todd Gamblin
c89de04f40 Support Yorick versions (#2640) 2016-12-19 14:55:23 -08:00
Todd Gamblin
4b7b6768e6 Modify github regex to support NCO. (#2633) 2016-12-19 14:17:18 -08:00
Todd Gamblin
a2b4146e10 Fixes for various hash issues (#2626)
* Better output for disambiguate_specs()

* Fix wrong exception name.

* Fix satsifies(): concrete specs require matching by hash.

- Fixes uninstall by hash and other places where we need to match a
  specific spec.

- Fix an error in provider_index (satisfies() call was backwards)

- Fix an error in satisfies_dependencies(): checks were too shallow.

* Fix default args in Spec.tree()

* Move installed_dependents() to DB to avoid unknown package error.

* Make `spack find` and `sapck.store.db.query()` faster for hashes.

* Add a test to ensure satisfies() respects concrete Specs' hashes.
2016-12-19 09:09:53 -08:00
Alfredo Adolfo Gimenez
68e9a2ed8d Added customization for make targets in 'build' and 'install' phases for AutotoolsPackage (#2464)
* Customization for make targets in build and test phases for AutotoolsPackage

* Updated Blitz++ to use customized make build and test targets

* Removed flake8 error

* Removed make test customization, added make install customization, need to figure out issues with multiple make targets

* Changed build_targets and install_targets to normal attributes
2016-12-18 16:27:47 -08:00
Massimiliano Culpo
87c9b01033 openblas: derives from MakefilePackage (#2488)
* MakefilePackage: changed build_args and install_args for consistency with #2464
openblas: derives from MakefilePackage

* MakefilePackage: changed default edit behavior
2016-12-15 10:15:52 -08:00
Mario Melara
32cecf55ee Fix target for compiler on CNL operating systems (#2580)
Changes any to a string to avoid <built-in function any> being
incorrectly added to target in compilers.yaml.
2016-12-14 14:37:14 -08:00
Adam J. Stewart
1ac4ae0b41 Make unzip quiet (#2593) 2016-12-14 14:24:02 -08:00
Mario Melara
01230a62d4 Change attribute to match ArchSpec refactor (#2579)
Fixes issue #2578
2016-12-13 13:58:03 -08:00
Ben Morgan
fb809189d3 Better cxx11/14/17 flags for GNU/Clang/Intel (#2539)
* Better cxx11/14 flags for GNU/Clang/Intel

- GCC 4.8 only supports -std=c++1y for C++14
- Use CMake's rules for AppleClang to set cxx11 and cxx14 flags based on
  Apple Xcode/LLVM version
- Use CMake's rules for Intel to add support for cxx14 flags based on
  Intel version.

* Add cxx17_flag property

Implement property in compiler for c++17 as per those for c++11/14.
Add concrete support for GNU/Clang:

- Return -std=c++1z for GCC 5 and above per GCC documentation
- Return -std=c++1z for Clang 3.5 and above per Clang documentation
- Return -std=c++1z for Apple LLVM 6.1 and above per CMake's rules
2016-12-13 13:15:10 -08:00
Elizabeth Fischer
4f9e548bf6 Update spack setup and spack graph to be consistent with recent refactoring (#2317)
* Update `spack setup` and `spack graph` to be consistent with c557e765 and 9347f869.  Fixes #2316.

* Added another "fix" necessary to make `spack setup` work.

* Added another "fix" necessary to make `spack setup` work. (reverted from commit 7f0d3ecb38c97ec00491d7cd66b4266e3018b1ca)
2016-12-13 10:48:40 -08:00
Todd Gamblin
8496d8ff77 Add a test to ensure package names have the right case. (#2562) 2016-12-13 01:23:40 -08:00
Adam J. Stewart
9f71382912 Add missing bzip2 dependency to freetype (#2536)
* Add freetype dependency on bzip2

* Switch package with an install method for the docs
2016-12-12 14:20:36 -08:00
Sergey Kosukhin
8f28c9009e Set parent process's input stream inside the build process. (#2535) 2016-12-12 11:55:13 -08:00
Todd Gamblin
d3d87ea190 Add documentation for repositories and namespaces. (#2474)
* Add documentation for repositories and namespaces.

* Update and extend repository documentation per review.

- Also add `-N` argument for `spack spec`
2016-12-12 00:54:20 -08:00
Stephen McDowell
7e96b09e63 [docs] missin .. code-block:: console in Spack 101 (#2530)
The advanced [Uninstalling Packages](spack.readthedocs.io/en/latest/tutorial_sc16_spack_basics.html#uninstalling-packages) via hash has a couple missing `.. code-block:: console` directives ;)

I have no idea what branch to direct this to though...
2016-12-11 11:40:36 -08:00