Commit graph

23830 commits

Author SHA1 Message Date
Kai Torben Ohlhus
339c2290e7
openblas: add version 0.3.17 (#24941) 2021-07-19 13:46:14 +02:00
Harmen Stoppels
fc50e04b59
Fix S3 urlparse scheme error and add test (#24952) 2021-07-19 13:39:17 +02:00
Timothy Brown
1bf9c10f0c
mpas-model: support Intel compiler (#24905) 2021-07-19 13:15:16 +02:00
shanedsnyder
feb229a5f9
darshan runtime,darshan-util: convert to autotool packages (#24906) 2021-07-19 13:14:32 +02:00
Ben Darwin
efd9884e83
minc-toolkit: allow building shared libs and enable by default (#24909) 2021-07-19 13:08:36 +02:00
Adam J. Stewart
846ab65cc0
py-pythran: add new version (#24900) 2021-07-19 12:57:21 +02:00
Adam J. Stewart
29c7542c48
py-pyproj: add new versions (#24893) 2021-07-19 12:52:02 +02:00
Adam J. Stewart
3f9a5eda16
PROJ: add v8.x (#24892) 2021-07-19 12:51:17 +02:00
Ricardo Jesus
fefedbe653
Remove -Wmissing-format-attribute if compiling with nvhpc (#24873) 2021-07-19 12:25:13 +02:00
Adam J. Stewart
be90bdc355
py-rtree: add new version, fix runtime env (#24862) 2021-07-19 12:22:03 +02:00
Adam J. Stewart
b074dc17b1
py-bandit: add new package (#24857) 2021-07-19 12:18:47 +02:00
Satish Balay
fa503ef0e2
strumpack@develop: update change in examples/data PATH (#24814) 2021-07-19 12:01:05 +02:00
Lizzie Lundgren
99eb98d029
gchp: add versions 13.1.0, 13.1.1, 13.1.2 (#24755) 2021-07-19 10:53:02 +02:00
Alec Scott
90da25e24e
go: add v1.16.6 (#24934) 2021-07-19 09:04:34 +02:00
Seth R. Johnson
624c72afae
trilinos: simplify some variants (#24820)
* trilinos: rename basker variant

The Basker solver is part of amesos2 but is clearer without the extra
scoping.

* trilinos: automatically enable teuchos and remove variant

Basically everything in trilinos needs teuchos

* trilinos: group top-level dependencies

* trilinos: update dependencies, removing unused

- GLM, X11 are unused (x11 lacks dependency specs too)
- Python variant is more like a TPL so rearrange that
- Gtest internal package shouldn't be compiled or exported
- Add MPI4PY requirement for pytrilinos

* trilinos: remove package meta-options

- XSDK settings and "all opt packages" are not used anywhere
- all optional packages are dangerous

* trilinos: Use hwloc iff kokkos

See #19119, also the HWLOC tpl name was misspelled so this was being ignored before.

* Flake

* Fix trilinos +netcdf~mpi

* trilinos: default to disabling external dependencies

* Remove teuchos from downstream dependencies

* fixup! trilinos: Use hwloc iff kokkos

* Add netcdf requirements to packages with ^trilinos+exodus

* trilinos: disable exodus by default

* fixup! Add netcdf requirements to packages with ^trilinos+exodus

* trilinos: only enable hwloc when @13: +kokkos

* xyce: propagate trilinos dependencies more simply

* dtk: fix missing boost dependency

* trilinos: remove explicit metis dependency

* trilinos: require metis/parmetis for zoltan

Disable zoltan by default to minimize default dependencies

* trilinos: mark mesquite disabled and fix kokkos arch

* xsdk: fix trilinos to also list zoltan [with zoltan2]

* ci: remove nonexistent variant from trilinos

* trilinos: add missing boost dependency

Co-authored-by: Satish Balay <balay@mcs.anl.gov>
2021-07-16 11:36:06 -07:00
Adam J. Stewart
c56f2a935d Sphinx 3.4+ required for correct reference target linking 2021-07-16 08:30:56 -07:00
Adam J. Stewart
b8afc0fd29 API Docs: fix broken reference targets 2021-07-16 08:30:56 -07:00
Adam J. Stewart
c37df94932
Python: query distutils to find site-packages directory (#24095)
Third-party Python libraries may be installed in one of several directories:

1. `lib/pythonX.Y/site-packages` for Spack-installed Python
2. `lib64/pythonX.Y/site-packages` for system Python on RHEL/CentOS/Fedora
3. `lib/pythonX/dist-packages` for system Python on Debian/Ubuntu

Previously, Spack packages were hard-coded to use the (1). Now, we query the Python installation itself and ask it which to use. Ever since #21446 this is how we've been determining where to install Python libraries anyway.

Note: there are still many packages that are hard-coded to use (1). I can change them in this PR, but I don't have the bandwidth to test all of them.

* Python: handle dist-packages and site-packages
* Query Python to find site-packages directory
* Add try-except statements for when distutils isn't installed
* Catch more errors
* Fix root directory used in import tests
* Rely on site_packages_dir property
2021-07-16 08:28:00 -07:00
Maciej Wójcik
64f31c4579
Added missing Plumed 2.5-2.7 versions to Gromacs package (#24912)
* Added missing Plumed 2.5-2.7 releases

* Added missing Plumed 2.5-2.7 dependencies

* Merged version ranges

* Simplified version ranges

* Deduplicated comment
2021-07-16 05:47:27 -06:00
eugeneswalker
e96ba16555
ci: build trilinos with all variants on (#24908) 2021-07-15 18:44:42 +00:00
Massimiliano Culpo
fd55d627a7
archspec: added support for arm compiler on graviton2 (#24904) 2021-07-15 13:27:13 +00:00
Adam J. Stewart
753fa4ed08
py-gast: add v0.5.0 (#24898) 2021-07-15 14:56:09 +02:00
Adam J. Stewart
f66571ffe1
py-beniget: add v0.4.0, v0.2.3 (#24899) 2021-07-15 14:54:56 +02:00
Valentin Volkl
fa4b9a6abc
simsipm: add new package (#24903)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-07-15 14:06:41 +02:00
Erik Schnetter
0a3f875b95
boost: Run b2 headers after a git clone (#24889) 2021-07-14 22:00:44 -05:00
vucoda
29f10624bd
Change url+checksums for libpng to official sourceforge archives (#23767)
* Change url and checksums for libpng to official sourceforge archives
* Update url scheme from http to https
* switch to .xz archives

Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2021-07-14 21:30:32 +00:00
Tamara Dahlgren
1c07dd1adb
Update stand-alone tests to use test stage work directory (#24112) 2021-07-14 13:33:50 -07:00
Axel Huebl
8126a13211
Dask: 2021.06.2 (#24606)
* Dask: 2021.06.2

Add the latest DASK release.

* Apply suggestions from code review

Co-authored-by: Sergey Kosukhin <skosukhin@gmail.com>

* Update py-distributed relation

Co-authored-by: Sergey Kosukhin <skosukhin@gmail.com>
2021-07-14 14:58:53 -05:00
robgics
b24ba28774
Add ampl package (#24105) 2021-07-14 19:55:28 +00:00
Luhan Cheng
369ccb953f
Fix inconsistent arch arguments expected in cudnn package (#24882)
* change aarch64sbsa to aarch64

* fixing arch in url

* making ci pipeline happy

* removing comments

Co-authored-by: Luhan Cheng <luhan.cheng@monash.edu>
2021-07-14 19:40:02 +00:00
Greg Becker
3004f33c58
spec may be a string, use precomputed namespace (#24867) 2021-07-14 11:58:31 -07:00
Tamara Dahlgren
a9e7f3a4e7
scotch: use https (#24891) 2021-07-14 14:35:27 -04:00
Zack Galbreath
56c8f533cd
py-setuptools-scm: change default to +toml (#24884) 2021-07-14 15:45:41 +00:00
Valentin Volkl
e6e21b16d8
py-particle: add version 0.15.1 (#24834) 2021-07-14 07:53:01 -05:00
G-Ragghianti
555c054984
Added new version 2.6.1 (#24871) 2021-07-14 07:51:23 -05:00
Xavier Delaruelle
b37bf93aa2
environment-modules: add v4.8.0 (#24874) 2021-07-14 14:17:21 +02:00
Thomas Kluyver
c33ec328fb
Add py-h5py version 3.3.0 (#24781)
* Add py-h5py version 3.3.0

The mpi4py dependency was bumped to 3.0.2 in setup.py. I'm not sure if that's actually required or not, but nothing lower is still tested.

* Use environment variable to stop h5py using setuptools setup_requires feature

* Add myself as a maintainer for py-h5py
2021-07-14 07:33:57 -04:00
Kai Torben Ohlhus
652f35a39f
openblas: add version 0.3.16 (#24872) 2021-07-14 04:07:16 -07:00
Jen Herting
e3fdbb976e
[py-transformers] added version 4.6.1 (#24571)
* [py-transformers] can now use newer versions of tokenizers

* [py-transformers] Added version 4.6.1

* [py-transformers] removing old patch

* [py-transformers] boto3 no longer needed
2021-07-14 02:58:10 +00:00
Jen Herting
f095383caf
New package: py-torchmeta (#24596)
* first build of py-torchmeta

* updated versions for torchvision and torch

* [py-torchmeta] using pil provider

Co-authored-by: Sid Pendelberry <sid@rit.edu>
2021-07-13 21:38:12 -05:00
Manuela Kuhn
94767ea573
py-setuptools-rust: add 0.12.1 (#24863)
* py-setuptools-rust: add 0.12.1

* mark 0.10.6 as deprecated and fix style
2021-07-13 21:36:14 -05:00
Alec Scott
28872955d5
Limit Gdal Version for Grass and Add Version 7.8.5 (#24737) 2021-07-13 20:50:56 -05:00
Mauricio Ferrato
e1d7275f92
flecsph package: use cxxstd=17 and external cinch (#24856) 2021-07-13 15:22:55 -07:00
Manuela Kuhn
04520ebdea
py-cryptography: add 3.4.7 (#24866) 2021-07-13 22:01:54 +00:00
G-Ragghianti
819f288587
MAGMA package: fix smoke test method (#24848)
The Makefile for the MAGMA smoke tests uses pkg-config to find
the MAGMA compile flags, but the test() routine in the spack
package was not configured to provide the location of the
pkg-config file. This modification sets PKG_CONFIG_PATH correctly
to allow the smoketests to successfully compile. It also removes
the *_dir variables which were unused by the magma
examples/Makefile.
2021-07-13 14:50:15 -07:00
Martin Köhler
8ccdcf2e84
Octave: add version 6.3.0 (#24851) 2021-07-13 14:27:49 -07:00
Michael Kuhn
df77922d22
py-jupyterlab, py-jupyter-server: fix version range (#24864)
Using the original concretizer, trying to concretize py-jupyterlab fails
with
```
==> Error: Invalid Version range: 6.1.0:6.1
```
because py-tornado does not have a 6.1.0 version but only a 6.1 one.
2021-07-13 21:05:14 +00:00
Tom Payerle
9a0febab89
libtirpc: Fix for #24806 (remove -pipe flag when using %nvhpc) (#24807)
Makefiles for libtirpc have hardcoded the -pipe flag to the compiler
nvhpc compilers do not recognize that flag.
This PR provides a patch to remove the -pipe flag from the Makefile.
Patch should work with libtirpc@1.2.6 and @1.1.4
2021-07-13 12:55:20 -07:00
Michael Schlottke-Lakemper
231a36c5fd
HOHQMesh: add version v1.0.1 (#24823) 2021-07-13 12:31:34 -07:00
Frank Willmore
d79022f842
openmpi: add direct cuda dependency (#24859)
makes cuda a direct dependency, so it still shows up when using external hwloc+cuda
2021-07-13 19:14:29 +00:00