Commit graph

22672 commits

Author SHA1 Message Date
Olivier Cessenat
628f9eadb5
perl-tk: creating package (#21586) 2021-03-18 11:20:18 -05:00
Paul Kuberry
a405811bfe
xyce: add new package (#22345) 2021-03-18 14:49:42 +00:00
Harmen Stoppels
196db55855
Fix broken spack -c flag (#22361) 2021-03-18 15:26:30 +01:00
Ryan Honeyager
c6f3f57c31
Add udunits2 v2.2.28 and target the new UCAR repository (#22370) 2021-03-18 12:47:20 +00:00
Axel Huebl
f901c61e68
py-yt: 3.6.1 (#22329)
* py-yt: 3.6.1

The latest bugfix release of yt-project fixes issues with matplotlib
version 3.3.0+.

* py-yt: add many more version constrains
2021-03-18 11:19:58 +00:00
Massimiliano Culpo
8cf6ad9917
archspec: update to latest version (#22357) 2021-03-18 00:23:09 -07:00
Benjamin Tovar
4c9c5393f1
CCTools: add v7.2.3 (#22355) 2021-03-18 08:10:08 +01:00
Harmen Stoppels
15645147ed
Tab to spaces (#22362) 2021-03-18 06:20:06 +00:00
Hector Martinez-Seara
441d09cc27
Amber (#22275)
* Improved amber package. Added amber20

* Corrected description link between ambertools and amber versions

* Fixed ambertools handling

* Apply pathes only when problematic traget requested

* fixed style issue

* Added amber20 sha256 checksum

* Improved documentation

* Removed preferred amber18

* Changef f-string to str.format()

* Changef f-string to str.format()

* removed url_for_version fuction
2021-03-18 05:45:24 +00:00
Seth R. Johnson
e5103b6914
openblas: fix older versions (#22358) 2021-03-18 03:21:58 +00:00
Harmen Stoppels
e57053bd32
Fix indentation compiler wrapper issue (#22352) 2021-03-17 18:45:10 +00:00
Tomoki, Karatsu
d934363ae5
intel-mpi-benchmarks: Take in upstream bugfix patches. (#22317) 2021-03-17 11:09:25 -07:00
Adam J. Stewart
251e4282f1
GDAL: add v3.2.2 (#22224) 2021-03-17 11:28:06 -06:00
Adam J. Stewart
2d623bab31
tidy-html5: add new package (#22286) 2021-03-17 16:14:39 +01:00
Dr. Christian Tacke
96e394845b
root: add v6.22.08 (#22263) 2021-03-17 16:14:12 +01:00
AMD Toolchain Support
e6c8fa1311
aocc: add support for v3.0 compilers (#22219)
A mitigation of a known issue that affects v3.0 is added, see
https://developer.amd.com/wp-content/resources/AOCC-3.0-Install-Guide.pdf
2021-03-17 15:06:25 +00:00
Harmen Stoppels
43dd7b84c0
spack location: bugfix for out of source build dirs (#22348) 2021-03-17 14:38:14 +00:00
Erik Schnetter
9a565e0ec7
shtools: add v4.8 (#22305) 2021-03-17 13:20:46 +01:00
Erik Schnetter
bac3ac4fdb
fasttransforms: add v0.5.0 (#22304) 2021-03-17 13:20:09 +01:00
Jen Herting
8d2944bf77
flac: add v1.3.3 (#22307) 2021-03-17 12:18:52 +01:00
Harmen Stoppels
889e83a9b5
boost: fix unicode bugs in Boost recipe (#22301) 2021-03-17 11:22:21 +01:00
Benjamin Tovar
047bb490cb
cctools: add v7.2.2 (#22325) 2021-03-17 11:19:01 +01:00
Erik Schnetter
2032c608e8
ssht: add v1.3.5 (#22306) 2021-03-17 11:16:56 +01:00
David Hadley
9e62eadce0
pythia6: fix wrong patch (#22338)
See #22330
2021-03-17 03:25:09 -06:00
Bryan Herman
364b9e7a27
add maintainer to py-h5py (#22332) 2021-03-16 18:46:16 -06:00
Tomoyasu Nojiri
857f6392a2
r-v8: Fix build error (#22314) 2021-03-16 19:39:30 -05:00
eugeneswalker
b75b029706
amrex: add gcc 8 conflicts (#22339) 2021-03-16 23:54:40 +00:00
Tiziano Müller
12cad38aef
llvm: enable ncurses patch for building on SUSE in 11.0.1 (#22319)
fixes #19625 again
2021-03-16 16:22:10 -07:00
Danny McClanahan
18fbd58fe6
fix weird failure in variant values (#22328) 2021-03-16 16:04:51 -07:00
AMD Toolchain Support
912606ad9a
spack recipe for aocl-sparse (#22079) 2021-03-16 14:34:25 -07:00
Wouter Deconinck
c9ba95cc5c
containerize: fix typo in documentation (#22331)
Before this fix, `spack containerize` complains that `centos/7` is invalid
(should have been `centos:7`)
2021-03-16 21:02:26 +00:00
AMD Toolchain Support
603331e669
WRF package: add aocc 3.0 support for WRF 3.9.1.1 and 4.2 (#22285)
* Added 2 new configure patch files to build WRF 3.9.1.1 and 4.2
  with aocc@3.0
* Renamed patch files used for building WRF 3.9.1.1 and 4.2 with
  aocc@2.3 (mostly, this also removes -march=native from AOCCOPT
  and updates LIBMVEC options for aocc@2.3)
2021-03-16 12:59:43 -07:00
Massimiliano Culpo
2aab415f3d
The action to detect changes needs a repository to be checked out on push event (#22324) 2021-03-16 17:27:41 +00:00
Massimiliano Culpo
b304b4bdb0
Speed-up CI by reorganizing tests (#22247)
* unit tests: mark slow tests as "maybeslow"

This commit also removes the "network" marker and
marks every "network" test as "maybeslow". Tests
marked as db are maintained, but they're not slow
anymore.

* GA: require style tests to pass before running unit-tests

* GA: make MacOS unit tests fail fast

* GA: move all unit tests into the same workflow, run style tests as a prerequisite

All the unit tests have been moved into the same workflow so that a single
run of the dorny/paths-filter action can be used to ask for coverage based
on the files that have been changed in a PR. The basic idea is that for PRs
that introduce only changes to packages coverage is not necessary, this
resulting in a faster execution of the tests.

Also, for package only PRs slow unit tests are skipped.

Finally, MacOS and linux unit tests are now conditional on style tests passing
meaning that e.g. we won't waste a MacOS worker if we know that the PR has
flake8 issues.

* Addressed review comments

* Skipping slow tests on MacOS for package only recipes

* QA: make tests on changes correct before merging
2021-03-16 08:16:31 -07:00
a-saitoh-fj
d36de79ba0
py-aiobotocore: New package (#22258)
* py-aiobotocore: New package

* py-aiobotocore: Added python dependencies, and Removed unnecessary whitespace
2021-03-16 08:57:54 -05:00
Todd Gamblin
3e570ce694 bugfix: allow imposed constraints to be overridden in special cases
In most cases, we want condition_holds(ID) to imply any imposed
constraints associated with the ID. However, the dependency relationship
in Spack is special because it's "extra" conditional -- a dependency
*condition* may hold, but we have decided that externals will not have
dependencies, so we need a way to avoid having imposed constraints appear
for nodes that don't exist.

This introduces a new rule that says that constraints are imposed
*unless* we define `do_not_impose(ID)`. This allows rules like
dependencies, which rely on more than just spec conditions, to cancel
imposed constraints.

We add one special case for this: dependencies of externals.
2021-03-16 12:50:14 +01:00
Todd Gamblin
e7cba04b95 bugfix: do not generate dep conditions when no dependency
We only consider test dependencies some of the time. Some packages are
*only* test dependencies. Spack's algorithm was previously generating
dependency conditions that could hold, *even* if there was no potential
dependency type.

- [x] change asp.py so that this can't happen -- we now only generate
      dependency types for possible dependencies.
2021-03-16 12:50:14 +01:00
Todd Gamblin
ada6ecc797 concretizer: unify logic for spec conditionals
This builds on #20638 by unifying all the places in the concretizer where
things are conditional on specs. Previously, we duplicated a common spec
conditional pattern for dependencies, virtual providers, conflicts, and
externals. That was introduced in #20423 and refined in #20507, and
roughly looked as follows.

Given some directives in a package like:

```python
depends_on("foo@1.0+bar", when="@2.0+variant")
provides("mpi@2:", when="@1.9:")
```

We handled the `@2.0+variant` and `@1.9:` parts by generating generated
`dependency_condition()`, `required_dependency_condition()`, and
`imposed_dependency_condition()` facts to trigger rules like this:

```prolog
dependency_conditions_hold(ID, Parent, Dependency) :-
  attr(Name, Arg1)             : required_dependency_condition(ID, Name, Arg1);
  attr(Name, Arg1, Arg2)       : required_dependency_condition(ID, Name, Arg1, Arg2);
  attr(Name, Arg1, Arg2, Arg3) : required_dependency_condition(ID, Name, Arg1, Arg2, Arg3);
  dependency_condition(ID, Parent, Dependency);
  node(Parent).
```

And we handled `foo@1.0+bar` and `mpi@2:` parts ("imposed constraints")
like this:

```prolog
attr(Name, Arg1, Arg2) :-
  dependency_conditions_hold(ID, Package, Dependency),
  imposed_dependency_condition(ID, Name, Arg1, Arg2).

attr(Name, Arg1, Arg2, Arg3) :-
  dependency_conditions_hold(ID, Package, Dependency),
  imposed_dependency_condition(ID, Name, Arg1, Arg2, Arg3).
```

These rules were repeated with different input predicates for
requirements (e.g., `required_dependency_condition`) and imposed
constraints (e.g., `imposed_dependency_condition`) throughout
`concretize.lp`. In #20638 it got to be a bit confusing, because we used
the same `dependency_condition_holds` predicate to impose constraints on
conditional dependencies and virtual providers. So, even though the
pattern was repeated, some of the conditional rules were conjoined in a
weird way.

Instead of repeating this pattern everywhere, we now have *one* set of
consolidated rules for conditions:

```prolog
condition_holds(ID) :-
  condition(ID);
  attr(Name, A1)         : condition_requirement(ID, Name, A1);
  attr(Name, A1, A2)     : condition_requirement(ID, Name, A1, A2);
  attr(Name, A1, A2, A3) : condition_requirement(ID, Name, A1, A2, A3).

attr(Name, A1)         :- condition_holds(ID), imposed_constraint(ID, Name, A1).
attr(Name, A1, A2)     :- condition_holds(ID), imposed_constraint(ID, Name, A1, A2).
attr(Name, A1, A2, A3) :- condition_holds(ID), imposed_constraint(ID, Name, A1, A2, A3).
```

this allows us to use `condition(ID)` and `condition_holds(ID)` to
encapsulate the conditional logic on specs in all the scenarios where we
need it. Instead of defining predicates for the requirements and imposed
constraints, we generate the condition inputs with generic facts, and
define predicates to associate the condition ID with a particular
scenario. So, now, the generated facts for a condition look like this:

```prolog
condition(121).
condition_requirement(121,"node","cairo").
condition_requirement(121,"variant_value","cairo","fc","True").
imposed_constraint(121,"version_satisfies","fontconfig","2.10.91:").
dependency_condition(121,"cairo","fontconfig").
dependency_type(121,"build").
dependency_type(121,"link").
```

The requirements and imposed constraints are generic, and we associate
them with their meaning via the id. Here, `dependency_condition(121,
"cairo", "fontconfig")` tells us that condition 121 has to do with the
dependency of `cairo` on `fontconfig`, and the conditional dependency
rules just become:

```prolog
dependency_holds(Package, Dependency, Type) :-
  dependency_condition(ID, Package, Dependency),
  dependency_type(ID, Type),
  condition_holds(ID).
```

Dependencies, virtuals, conflicts, and externals all now use similar
patterns, and the logic for generating condition facts is common to all
of them on the python side, as well. The more specific routines like
`package_dependencies_rules` just call `self.condition(...)` to get an id
and generate requirements and imposed constraints, then they generate
their extra facts with the returned id, like this:

```python
    def package_dependencies_rules(self, pkg, tests):
        """Translate 'depends_on' directives into ASP logic."""
        for _, conditions in sorted(pkg.dependencies.items()):
            for cond, dep in sorted(conditions.items()):
                condition_id = self.condition(cond, dep.spec, pkg.name)  # create a condition and get its id
                self.gen.fact(fn.dependency_condition(  # associate specifics about the dependency w/the id
                    condition_id, pkg.name, dep.spec.name
                ))
        # etc.
```

- [x] unify generation and logic for conditions
- [x] use unified logic for dependencies
- [x] use unified logic for virtuals
- [x] use unified logic for conflicts
- [x] use unified logic for externals

LocalWords:  concretizer mpi attr Arg concretize lp cairo fc fontconfig
LocalWords:  virtuals def pkg cond dep fn refactor github py
2021-03-16 12:50:14 +01:00
Tomoyasu Nojiri
ce7bde24d4
amdlibflame: Fix build error (#22316) 2021-03-16 10:32:51 +00:00
Tomoyasu Nojiri
475c877fc9
libflame: Fix build error (#22315) 2021-03-16 10:03:32 +00:00
Harmen Stoppels
8ffeb96c77
hwloc: add dependency on ncurses (#22300)
Co-authored-by: Michal Sudwoj <msudwoj@student.ethz.ch>
2021-03-16 08:34:41 +01:00
Adam J. Stewart
d7f1ff68fb
OpenCV: add new version, simplify package (#22292) 2021-03-15 14:41:24 -07:00
Harmen Stoppels
195341113e
Expand relative dev paths in environment files (#22045)
* Rewrite relative dev_spec paths internally to absolute paths in case of relocation of the environment file

* Test relative paths for dev_path in environments

* Add a --keep-relative flag to spack env create

This ensures that relative paths of develop paths are not expanded to
absolute paths when initializing the environment in a different location
from the spack.yaml init file.
2021-03-15 15:38:35 -05:00
Harmen Stoppels
4f1d9d6095
Propagate --test= for environments (#22040)
* Propagate --test= for environments

* Improve help comment for spack concretize --test flag

* Add tests for --test with environments
2021-03-15 15:34:18 -05:00
Chuck Atkins
f949ae772d
vtk-h: Fix missing trailing-colon in CMake version (#22302) 2021-03-15 20:16:56 +00:00
Harmen Stoppels
6ba7632d2b
Make py-boto3 installable again with old concretizer (#22298) 2021-03-15 18:21:11 +00:00
Adam J. Stewart
d166ca91f1
dos2unix: gettext needed for linking (#22288) 2021-03-15 12:19:15 -06:00
Adam J. Stewart
70c505a0b8
Fix use of quotes in Python build system (#22279) 2021-03-15 11:11:27 -07:00
Adam J. Stewart
78d1b28b72
py-tqdm: add new version, variants (#22290) 2021-03-15 10:03:52 -07:00
Adam J. Stewart
3c493ae629
PyTorch: add missing tqdm dependency (#22289) 2021-03-15 09:55:31 -07:00