Commit graph

35426 commits

Author SHA1 Message Date
Wouter Deconinck
6c912b30a2
Codespaces support for rapid PR evaluation (#41901)
* Create devcontainer.json

* Ensure codespace can be setup for current branch

* fix: find compilers in site scope

* fix: use cloud_pipelines ubuntu20.04 image

* fix: spack config --scope site add

* fix: use develop, not develop-root mirror
2024-03-26 21:13:32 -05:00
Jordan Ogas
f4da453f6b
Charliecloud package: add 0.36 and 0.37; update dependencies. (#42590)
This adds a dependency on pkg-config which in turn builds pkg-config
on pipelines using %onapi/%cce: update the pkg-config build to disable
specific warnings-as-errors from these compilers.

Co-authored-by: Reid Priedhorsky <1682574+reidpr@users.noreply.github.com>
2024-03-26 16:13:29 -07:00
Harmen Stoppels
7e9caed8c2
ci: fix codecov upload (#43382) 2024-03-26 22:49:26 +01:00
Matthew Thompson
69509a6d9a
pflogger: add version 1.14.0 (#43373) 2024-03-26 14:08:24 -06:00
Massimiliano Culpo
0841050d20
Add macos-14 as a runner (Apple M1) (#42728)
* Add macos-14 as a runner (Apple M1)

* Mark a test xfail

We need to check later if this test needs modifications
on Apple Silicon chips.

---------

Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
Co-authored-by: alalazo <alalazo@users.noreply.github.com>
2024-03-26 12:36:21 -07:00
Cody Balos
321ffd732b
axom package: add tests (#43312) 2024-03-26 11:21:28 -07:00
Simon Frasch
22922323e3
spfft package: add version 1.1.0 (#43318) 2024-03-26 10:19:06 -07:00
eugeneswalker
0b5b192c18
glvis: fix spack issue #42839 (#43369)
* glvis: fix spack issue #42839

* add issue link
2024-03-26 11:13:54 -06:00
Andrey Alekseenko
1275c57d88
gromacs: add new versions 2024, 2024.1; fix license (#43366) 2024-03-26 10:19:58 -06:00
Juan Miguel Carceller
29a39ac6a0
xrootd: add a dependency on pkgconfig when building with +davix (#43339)
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-03-26 09:01:47 -07:00
kwryankrattiger
ae9c86a930
buildcache sync: manifest-glob with arbitrary destination (#41284)
* buildcache sync: manifest-glob with arbitrary destination

The current implementation of the --manifest-glob is a bit restrictive
requiring the destination to be known by the generation stage of CI.
This allows specifying an arbitrary destination mirror URL.

* Add unit test for buildcache sync with manifest

* Fix test and arguments for manifest-glob with override destination

* Add testing path for unused mirror argument
2024-03-26 08:47:45 -07:00
Massimiliano Culpo
83199a981d
Allow unit test to work on Apple M1/M2 (#43363)
* Remove a few compilers from static test data

These compilers were used only in a bunch of tests, so
they are added only there.

* Remove clang@3.3 from unit test configuration

* Parametrize compilers.yaml

* Remove specially named gcc from static data

The compilers are used in two tests

* Remove apple-clang and macOS compilers from static data

The compiler was used only in multimethod tests

* Remove clang@3.5 (compiler seems to be unused)

* Remove gcc@4.4.0 (compiler seems to be unused)

* Exclude x86_64 tests on other architectures

* Mark two tests as for clingo only

* Update version syntax in compilers.yaml

* Parametrize tcl tests on architectures

* Parametrize lmod tests on architectures

* Substitute gcc@4.5.0 with gcc@4.8.0 so it can be used on aarch64

* Fix a few issues with aarch64 and unit-tests
2024-03-26 16:20:42 +01:00
eugeneswalker
ed40c3210e
ci: add developer-tools-manylinux2014 stack (#43128)
* ci: add developer-tools-manylinux2014 stack

* add libtree, patchelf
2024-03-26 08:02:16 -07:00
Christopher Christofi
be96460ab2
py-nibabel: add new version 5.2.1 (#43335) 2024-03-26 12:46:48 +01:00
pauleonix
95caf55fe7
cuda: add 12.4.0, 12.3.2, 12.3.1 and 12.2.2 (#42748)
Add conflicts to ginkgo and petsc to avoid build failures with cuda@12.4

Co-authored-by: pauleonix <pauleonix@users.noreply.github.com>
2024-03-26 07:10:48 +01:00
Mark W. Krentel
960af24270
hpctoolkit: add version 2024.01.1 (#43353)
Add version 2024.01.1.  Adjust the dependencies for develop that no
longer uses libmonitor.
2024-03-25 17:57:45 -06:00
Christopher Christofi
899bef2aa8
py-nilearn: add new version (#43332)
* py-nilearn: add new version
* add maintainers and license
2024-03-25 16:45:13 -07:00
Adam J. Stewart
f0f092d9f1
py-keras: add v3.1.1 (#43283) 2024-03-26 00:38:01 +01:00
Christopher Christofi
6eaac2270d
py-trx-python: add new package with version 0.2.9 (#43333) 2024-03-25 16:11:28 -07:00
John W. Parent
a9f3f6c007
seacas: fix linking on Windows (#43356) 2024-03-25 16:28:03 -06:00
Rocco Meli
08a04ebd46
spglib: add version 2.3.1 (#43345) 2024-03-25 14:27:32 -06:00
Matthew Thompson
d8e642ecb7
Update gftl, pflogger to match GFE 1.14 (#43291) 2024-03-25 13:22:50 -07:00
Christopher Christofi
669ed69d8e
py-mne: add new version (#43334) 2024-03-25 13:21:07 -07:00
potter-s
7ebb21a0da
Updated version (#43343)
Co-authored-by: Simon Potter <sp39@sanger.ac.uk>
2024-03-25 13:12:58 -07:00
Alec Scott
93ffa9ba5d
go: add v1.22.1 (#43337) 2024-03-25 09:32:58 -07:00
liam-o-marsh
e5fdb90496
pyscf: new dependency bounds for pyscf, new version (#43300) 2024-03-25 10:24:01 -05:00
Danny McClanahan
303a0b3653
add command_line scope to help metavar (#42890)
It's now possible to add config on the command line with `spack -c <CONFIG_VARS> ...`, but the new `command_line` scope isn't reflected in the help output for `--scope`:

```bash
> spack help config
...
  --scope {defaults,system,site,user}[/PLATFORM] or env:ENVIRONMENT
                        configuration scope to read/modify
...
```
2024-03-25 07:13:43 -07:00
Juan Miguel Carceller
9f07544bde
r-rcpp: add version 1.0.11 and 1.0.12 (#43330) 2024-03-25 13:53:12 +01:00
Harmen Stoppels
9b046a39a8
strip url: fix whl suffix, remove exe (#43344) 2024-03-25 13:46:09 +01:00
Massimiliano Culpo
0c9a53ba3a
Add intel-oneapi-runtime, allow injecting virtual dependencies (#42062)
This PR adds:
- A new runtime for `%oneapi` compilers, called `intel-oneapi-runtime`
- Information to both `gcc-runtime`  and `intel-oneapi-runtime`, to ensure
  that we don't mix compilers using different soname for either `libgfortran`
  or `libifcore`

To do so, the following internal mechanisms have been implemented:
- Possibility to inject virtual dependencies from the `runtime_constraints`
  callback on packages

Information has been added to `gcc-runtime` to provide the correct soname
under different conditions on its `%gcc`.

Rules injected into the solver looks like:

```prolog
% Add a dependency on 'gfortran@5' for nodes compiled with gcc@=13.2.0 and using the 'fortran' language
attr("dependency_holds", node(ID, Package), "gfortran", "link") :-
  attr("node", node(ID, Package)),
  attr("node_compiler", node(ID, Package), "gcc"),
  attr("node_compiler_version", node(ID, Package), "gcc", "13.2.0"),
  not external(node(ID, Package)),
  not runtime(Package),
  attr("language", node(ID, Package), "fortran").

attr("virtual_node", node(RuntimeID, "gfortran")) :-
  attr("depends_on", node(ID, Package), ProviderNode, "link"),
  provider(ProviderNode, node(RuntimeID, "gfortran")),
  attr("node", node(ID, Package)),
  attr("node_compiler", node(ID, Package), "gcc"),
  attr("node_compiler_version", node(ID, Package), "gcc", "13.2.0"),
  not external(node(ID, Package)),
  not runtime(Package),
  attr("language", node(ID, Package), "fortran").

attr("node_version_satisfies", node(RuntimeID, "gfortran"), "5") :-
  attr("depends_on", node(ID, Package), ProviderNode, "link"),
  provider(ProviderNode, node(RuntimeID, "gfortran")),
  attr("node", node(ID, Package)),
  attr("node_compiler", node(ID, Package), "gcc"),
  attr("node_compiler_version", node(ID, Package), "gcc", "13.2.0"),
  not external(node(ID, Package)),
  not runtime(Package),
  attr("language", node(ID, Package), "fortran").
```
2024-03-24 22:59:21 -07:00
Loic Hausammann
1fd4353289
openmpi: Add new variant: romio-filesystem=string (#43265)
Co-authored-by: loikki <loic.hausammann@id.ethz.ch>
2024-03-24 01:00:38 +01:00
potter-s
fcb8ed6409
py-plotly: Add versions up to 5.20 (#43284) 2024-03-24 00:55:42 +01:00
Marie Houillon
2f11862832
openCARP: Add v15.0 packages (#43299)
Co-authored-by: openCARP consortium <info@opencarp.org>
2024-03-24 00:35:32 +01:00
Gavin John
bff11ce8e7
py-kaleido: Add MacOS build, fix checksums (#43309)
* py-kaledio: Fix completely borked package.py

* Readd stuff I forgot to add

* And one last missing thing

* Remove python restriction

* [@spackbot] updating style on behalf of Pandapip1

* Add MacOS build

* Fix checksum

* Handle all supported OSes

* Split imports

* Remove extra version stuff
2024-03-24 00:31:38 +01:00
fgava90
218693431c
paraview: fix range of exodusII-netcdf4.9.0.patch (#42926)
Co-authored-by: Gava, Francesco <francesco.gava@mclaren.com>
2024-03-23 20:33:20 +01:00
Alex Richert
e036cd9ef6
zlib-ng: New variants: +shared and +pic (#42796) 2024-03-23 19:32:42 +01:00
Sinan
cd5bef6780
py-line-profiler: Add 4.1.2 and 3.5.1 with their deps (#43156)
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2024-03-23 11:16:48 -06:00
Davide
159e9a20d1
suite-sparse: Add version 7.3.1 (#43328) 2024-03-23 10:00:28 -06:00
Auriane R
99bb288db7
py-torch-nvidia-apex: @3.11: Add config_settings(PEP517), add missing py-packaging (#43306) 2024-03-23 16:04:10 +01:00
Chris White
99744a766b
BLT: add new version 0.6.2 (#43257) 2024-03-23 15:25:29 +01:00
Juan Miguel Carceller
ddd8be51a0
re2: use the same C++ std used by abseil-cpp (#43288)
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-03-23 14:48:38 +01:00
吴坎
bba66b1063
py-vl-convert-python: Add 1.3.0 (#43297) 2024-03-23 14:44:23 +01:00
Howard Pritchard
1c3c21d9c7
mpich: add variant +xpmem to specify use of xpmem (#43293)
Signed-off-by: Howard Pritchard <hppritcha@gmail.com>
2024-03-23 14:36:06 +01:00
Christopher Christofi
cbe9b3d01c
bgen: add new package with version 1.1.7 (#43327) 2024-03-23 13:49:41 +01:00
Richard Berger
0abf5ba43c
hip: don't set HIP_PATH in ROCm 5.5+ (#42882) 2024-03-23 13:22:06 +01:00
Jonas Eschle
9ab3c1332b
py-tensorflow-probability: Re-activate +py-jax variant for @0.20:, Add 0.23.0 (#43249) 2024-03-23 13:15:26 +01:00
Christopher Christofi
b6425da50f
New package: qctool (#43326) 2024-03-23 05:46:03 -06:00
YI Zeping
937a4dbf69
NWChem pacakge: expand fftw patch appliance range to 7.2.2 (#43321)
* expand fftw patch appliance range to include 7.2.2
* fix formatting bug
2024-03-23 05:41:34 -06:00
Gavin John
cd779ee54d
octave package: correction to jdk variant description (#43325) 2024-03-23 05:41:11 -06:00
Gavin John
7ddcb13325
openjdk package: use correct homepage (#43324) 2024-03-23 05:40:58 -06:00