Commit graph

11875 commits

Author SHA1 Message Date
Themos Tsikas
8e9f4d0078
Update for Build 7020 of nagfor compiler (#17555) 2020-07-16 10:39:06 -05:00
darmac
d7794540b2
Add new package: hibench (#17552) 2020-07-16 08:47:33 -05:00
iarspider
ae44b1d7b9
New package: openloops (#17520)
* New package: OpenLoops

* install() for openloops

* Working OpenLoops recipe

* Flake-8

* Only copy collection file if required; add clarification to num_jobs

* Add __future__ import just in case

* Fix missing space

* Remove __future__ import

* Changes from review, pt. 1

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Replace print() with write()

* Flake-8

Co-authored-by: iarspider <iarpsider@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-16 08:33:23 -05:00
Tom Payerle
df12b2bd15
kallisto: remove mpich dependency (#17551)
kallisto does not depend on mpich or MPI, except possibly indirectly
through hdf5 (but that should be handled by hdf5).
2020-07-16 08:28:50 +02:00
darmac
148a6a8860
Add new package: prometheus (#17541) 2020-07-15 21:56:14 -05:00
darmac
efba3731e5
storm: update url, version & runtime depends (#17523)
* storm: update url, version & runtime depends

* fix list_url error
2020-07-15 21:39:03 -05:00
fcannini
6eb332a984
vasp: New package. (#15187)
* vasp: New package.

* Remove unneeded `#noqa`

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Removed a completely needless tty.debug()

* Add compiler conflicts() and minute fixes

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-15 21:33:53 -05:00
Cyrus Harrison
d0a83f318b
add apcomp package (#17494)
* add apcomp package

* add maintainers

* fake8

* Update var/spack/repos/builtin/packages/apcomp/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* review suggestions

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-15 21:31:58 -05:00
Rémi Lacroix
0f67b97065
Update icu4c package (#17461)
* icu4c: Add new versions for older releases.

The old URLs for versions 60.1, 58.2 and 57.1 do not work anymore so add the versions available on Github.

The old versions are kept for reference (cf. #15896).

* icu4c: Add versions 66.1 and 67.1.

* icu4c: Fix compilation of versions 58 and 59 with recent glibc.
2020-07-15 18:57:19 -05:00
kolamsrinivas
d2c2e000a7
changes to py-torch recipe to enable rocm build (#17410)
* changes to recipe to enable rocm build

* fixing flake8 issue

* addressed the review comment
2020-07-15 18:45:22 -05:00
Julius-Plehn
4ac1a532f3
Adds new R package: GSODR (#17529)
* R GSODR package

* use cloud mirror
2020-07-15 12:05:39 -05:00
vvolkl
f42dc4fa4d
[root] fix cmake args for r variant (#17487)
* [root] fix cmake args for r variant

* [root] add readline dependency to +r
2020-07-15 12:04:05 -05:00
Paul
48a9ad3652
Go: added v1.14.5 and v1.13.13. (#17539) 2020-07-15 09:31:49 +02:00
Cyrus Harrison
d55541919d
visit package update, add glu as a linux dep (#17537)
* visit: add glu as a dep for linux

* add note to suggested install command about mesa
2020-07-15 00:01:05 -07:00
Dr. Christian Tacke
0d4740d1b1
curl: add dependency on libidn2 (#17526)
If the system has libidn2 installed, then curl will use it.
spack has a libidn2 package, so let's use that!

Related: #16514
2020-07-15 08:43:38 +02:00
yellowhat
d56711f799
namd: added v2.14b2 (#17395)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-15 08:04:39 +02:00
ketsubouchi
99a47e407e
cantera: better specify dependency on sundials (#17540) 2020-07-15 07:53:36 +02:00
Julius-Plehn
7efb0e541e
New Package: GrADS (#17476)
* grads minimal package

* udpt template

* grads minima

* grads & shapelib package

* hdf4

* cleanup

* hdf5, netcdf variants

* updates environment function

* updating paths and pkgconfig

* cleanup
2020-07-14 22:30:39 -05:00
Hadrien G
7340be98f6
[acts] Add 0.25.x series (#17485)
* Add Acts v0.25 support

* Add Acts v0.25.1

* Add acts v0.25.2
2020-07-14 22:23:07 -05:00
vvolkl
c281eaf69f
[acts] remove false dependency (#17511) 2020-07-14 22:07:39 -05:00
Amjad Kotobi
2110b98829
r-glue: new version (#17517) 2020-07-14 21:56:05 -05:00
darmac
88537d02e4
gpdb: fix runtime issue (#17521) 2020-07-14 21:47:29 -05:00
Jon Rood
a2729fcd7f
zsh (package): add versions; switch to .xz archives (#17489)
* Add new versions including 5.8
* Download .xz archives for existing versions (this requires updating
  the associated checksums)
2020-07-14 19:47:03 -07:00
darmac
bcd41cec71
Add new package: minio (#17522) 2020-07-14 21:45:47 -05:00
Cyrus Harrison
6f6e896795
New package: babelflow (#17500) 2020-07-14 19:42:38 -07:00
darmac
28a25080ca
py-lockfile: depends on py-pbr by setup.py (#17524) 2020-07-14 21:34:59 -05:00
ketsubouchi
14f3f230c1
scons: support Fujitsu Fortran moddir option (#17538) 2020-07-14 21:24:18 -05:00
Jon Rood
d32bbae431
rsync (package): add version 3.2.2 (#17504) 2020-07-14 16:41:11 -07:00
Frank Willmore
710ff8d7ce
libyogrt (package): add variant to enable static builds (#17535) 2020-07-14 16:36:18 -07:00
Jon Rood
683881f912
py-protobuf (package): add version 3.12.2 (#17532)
This matches the current latest version of protobuf in Spack.
Generally the version of py-protobuf and protobuf should match,
but this constraint is not currently recorded in py-protobuf.
2020-07-14 16:31:15 -07:00
vvolkl
11d8aed6cd
dd4hep (package): add version 1.13.0 (#17528) 2020-07-14 16:24:33 -07:00
Andrey Prokopenko
ab68410c4c
Trilinos (package): remove maintainer (#17534) 2020-07-14 16:23:19 -07:00
darmac
fa614404e6
smartdenovo: added patch to fix compile error (debian) (#17435) 2020-07-14 13:02:31 +02:00
Axel Huebl
a6abd530bd
CUDA 11.0.2 (#17423)
- [x] wait for general release candidate
- [x] compute capability support
- [x] compiler conflicts
  - [x] ppc64le
- [x] new download links
2020-07-13 18:32:28 -05:00
Cyrus Harrison
3e13137f6e
add share libs variant to raja (#17496) 2020-07-13 14:57:25 -07:00
Cyrus Harrison
6aa6e19d34
add shared libs variant to umpire (#17497) 2020-07-13 14:57:04 -07:00
Cyrus Harrison
c2d8d8acbd
update vtk-m with pinned version for ascent and related packages (#17498)
* add ascent_ver to vtk-m pkg

* vtk-m:: add patches used by ascent
2020-07-13 14:56:45 -07:00
Cyrus Harrison
299dcdd3eb
update vtk-h package with new version and options (#17499) 2020-07-13 14:55:38 -07:00
Jon Rood
e0f13b298d
tmux (package): add version 3.1b (#17486) 2020-07-13 13:56:33 -07:00
Jon Rood
d2ac26f844
gdb (package): add version 9.2 (#17490) 2020-07-13 13:46:27 -07:00
Jon Rood
fae57d1422
cppcheck (package): add version 2.1 (#17491) 2020-07-13 13:45:37 -07:00
Jon Rood
c84a05b809
bison (package): add versions including 3.6.4 and 3.5.3 (#17492) 2020-07-13 13:44:37 -07:00
Jon Rood
05e8918076
curl (package): add version 7.71.0 (#17493) 2020-07-13 13:42:42 -07:00
Jon Rood
929cb9e62e
vim (package): add version 8.2.1201 (#17503) 2020-07-13 13:31:37 -07:00
Jon Rood
7d1f2abd56
screen (package): add version 4.8.0 (#17505) 2020-07-13 13:28:58 -07:00
Jon Rood
ab5f28aceb
stow (package): add version 2.3.1 (#17506) 2020-07-13 13:28:18 -07:00
Jon Rood
4450377794
gnutls: add version 3.6.14 (#17507) 2020-07-13 13:27:28 -07:00
Jon Rood
45eaa442c3
Global (package): add version 6.6.4 (#17508) 2020-07-13 13:26:39 -07:00
darmac
4fa519134f
bwa: support for aarch64 (#17473)
* bwa: support for aarch64

* bwa: fix build error for non-aarch64 machine
2020-07-13 10:52:23 -05:00
Rémi Lacroix
815f62ce0c
Update gdk-pixbuf package. (#17458)
* gdk-pixbuf: Add new stable versions.

* gdk-pixbuf: Add a missing dependency with libx11.

Also add a variant disabled by default to make it optional since it is considered deprecated
(cf. 3362e94c25).
2020-07-13 10:49:17 -05:00
Mark Olesen
b3b5ea4064
updated sha256 for openfoam-1806 patch (#17483)
- perhaps related to gitlab migration and/or upgrade (Dec 2019)

Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
2020-07-13 10:47:06 -05:00
Omar Padron
573489db71
Add libglvnd packages/Add EGL support (#14572)
* add new package: "libglvnd-frontend"

* add +glvnd variant to opengl package

* add +glvnd variant to mesa package

* add +egl variant to paraview package

* add libglvnd-frontend entries to default packages config

* fix style

* add default providers for glvnd virtuals

add default providers for glvnd-gl, glvnd-glx, and glvnd-egl

* WIP: rough start to external OpenGL documentation

* rename libglvnd-frontend package and backend virtual dependencies

* update documentation

* fix ligvnd-be-* typos

* fix libglvnd-fe package class name

* fix doc parse error
2020-07-13 11:32:36 -04:00
darmac
9c42f246ed
Add new package: atf (#17472) 2020-07-12 21:32:02 -05:00
Jannek Squar
dbdd2cb92f
Magics fix and update (#17477)
* Added new versions to magics and began to set not-so-optional netcdf dependency

* Added enforced netcdf dependency

* Fix also works for version 4.1.0
2020-07-12 21:20:12 -05:00
darmac
73f02b10de
lmbench: fix scripts path for aarch64 (#17456) 2020-07-11 12:53:53 -05:00
Dr Owain Kenway
9629f571bc
llvm-flang: Only build offload code if cuda enabled (#17466)
* llvm-flang Only build offload code if cuda enabled

The current version executes `cmake(*args)` always as part of the post install.  If device offload is not part of the build, this results in referencing `args` without it being set and the error:

```
==> Error: UnboundLocalError: local variable 'args' referenced before assignment

```

Looking at prevoous version of `llvm-package.py` this whole routine appears to be only required for offload, some indent `cmake/make/install` to be under the `if`.

* Update package.py

Add comment
2020-07-11 09:02:53 -05:00
Jen Herting
59bfc22d40
[glew] depends on libsm and libice (#17428)
* [glew] depends on libsm

* [glew] depends on libice
2020-07-10 19:32:26 -05:00
Justin S
1a8a147fe5
energyplus: add 9.3.0 (#17452)
* energyplus: add 9.3.0

* energyplus: fix version order

* energyplus: more concise links

* energyplus: avoid join_path
2020-07-10 19:23:04 -05:00
figroc
0612a9e8e9
tensorflow-serving-client: add new version 2.2.0 (#17462) 2020-07-10 19:10:04 -05:00
Rémi Lacroix
ea546425e8
Update the bbcp package (#17436)
* bbcp: Update the URLs to use HTTPS.

The HTTP URLs do not work anymore.

* bbcp: Add missing libnsl dependency.

* bbcp: Rename the git-based version to match the branch name.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-10 08:27:07 -05:00
ketsubouchi
7269a5bf51
py-pysam: add LDFLAGS to curl (#17434)
* py-pysam: add LDFLAGS to curl

* Update var/spack/repos/builtin/packages/py-pysam/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-10 08:26:21 -05:00
figroc
00d7e817c6
grpc: add versions 1.28/1.29/1.30 (#17433) 2020-07-10 08:25:47 -05:00
iarspider
ed7d485b58
New packages: thepeg, herwig++ (2.x) (#17443)
* New packages: Rivet, Herwig++ 2

* Add patches for thepeg

* Flake-8

* Update package.py

* Delete thepeg-2.1.6.patch

* Delete thepeg-2.1.5.patch

* Delete thepeg-2.1.3.patch

* Delete thepeg-2.2.0.patch
2020-07-10 08:25:21 -05:00
iarspider
38d387c9a5
New packages: looptools + vbfnlo (#17446)
* New package: vbfnlo

* Add new package: vbfnlo

* Add recipe for looptools

* Add patch for looptools

* LoopTools: patch not needed (fixed by developers without changing version)

* Remove patch file as well

* Update package.py

* Update package.py

* Fix vbfnlo recipe for old version

Co-authored-by: iarspider <iarpsider@gmail.com>
2020-07-10 08:24:14 -05:00
Julius-Plehn
02dd90ebf9
New Package: ChaNGa (#17442)
* WIP: changa package

* changa cleanup

* flake8 format

* adds master branch to ChaNGa

* positional arguments

* use install instead of copy
2020-07-10 08:22:20 -05:00
Rémi Lacroix
d9923a05e0
ltrace: Disable "-Werror". (#17444)
Some functions used by ltrace have been deprecated in recent versions of glibc.
2020-07-09 22:27:30 -05:00
Rémi Lacroix
8c6fa66b2a
openslide: Add missing dependencies. (#17445) 2020-07-09 22:26:37 -05:00
Sinan
e02d955aed
new package: ligra (#17425)
* new package: ligra

* setup run environment

* tidy up

* Update var/spack/repos/builtin/packages/ligra/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/ligra/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/ligra/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* flake8

Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-08 16:30:53 -05:00
Frank Willmore
b3fff20d1f
enable flatcc to be built with gcc@9.X.X (#17430)
`gcc` 9 and above have more warnings that break the `flatcc` build by default, because `-Werror` is enabled.  This loosens the build up so that we can build with more compilers in Spack.

- [x] Add `-DFLATCC_ALLOW_WERROR=OFF` to `flatcc` CMake arguments

Co-authored-by: Frank Willmore <willmore@anl.gov>
2020-07-08 13:57:09 -07:00
Patrick Gartung
8c41173678
Buildcache: bindist test without invoking spack compiler wrappers. (#15687)
* Buildcache:
   * Try mocking an install of quux, corge and garply using prebuilt binaries
   * Put patchelf install after ccache restore
   * Add script to install patchelf from source so it can be used on Ubuntu:Trusty which does not have a patchelf pat package. The script will skip building on macOS
   * Remove mirror at end of bindist test
   * Add patchelf to Ubuntu build env
   * Revert mock patchelf package to allow other tests to run.
   * Remove depends_on('patchelf', type='build') relying instead on
   * Test fixture to ensure patchelf is available.

* Call g++ command to build libraries directly during test build

* Flake8

* Install patchelf in before_install stage using apt unless on Trusty where a build is done.

* Add some symbolic links between packages

* Flake8

* Flake8:

* Update mock packages to write their own source files

* Create the stage because spec search does not create it any longer

* updates after change of list command arguments

* cleanup after merge

* flake8
2020-07-08 15:05:58 -05:00
iarspider
0bed621d0c
Add missing file (#17426)
Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
2020-07-08 10:50:47 -05:00
Amjad Kotobi
1d2754c3f6
r-usethis: new version and dependencies (#17411)
* r-usethis: new version and dependencies

* r-usethis: fix in dependency
2020-07-08 08:44:47 -05:00
tcojean
ae2a867a7f
Ginkgo: new versions (#17413)
* Add new Ginkgo versions with HIP support.

* Drop HIP support until more ROCm packages are integrated.
2020-07-08 08:42:56 -05:00
ketsubouchi
f0391db096
typhon: fix build with Fujitsu compilers (#17424) 2020-07-08 09:28:41 +02:00
TZ
084994db9c
ncl: fix compilation errors with Intel compilers (#17391)
The Intel compilers are more strict and require special command
line options (like -std=c99) to properly compile NCL.
2020-07-08 08:42:49 +02:00
iarspider
f1f31e3dfe
Fix YODA and Rivet recipes (#17412)
* Fix Rivet recipe; restrict Yoda versions for a give Rivet version

* Fix YODA recipe

* More tweaks to YODA version requirements

* Flake-8
2020-07-07 22:24:48 -05:00
Adam J. Stewart
a63761f875
oneDNN: add v1.5.1 (#17419) 2020-07-07 16:38:47 -05:00
Adam J. Stewart
3ce16c89b7
GDAL: add v3.1.2 (#17416) 2020-07-07 15:45:25 -05:00
Christoph Junghans
90285c7d61
votca-tools: fix build with mkl (#17414) 2020-07-07 13:27:10 -05:00
Frank Willmore
6c300ab717
snappy: added v1.1.8 (#17397) 2020-07-07 17:25:26 +02:00
g-mathias
05d8ba170b
jube: added v2.4.0 (#17404)
Co-authored-by: lu64bag3 <gerald.mathias@lrz.de>
2020-07-07 16:11:53 +02:00
figroc
51f65152a5
abseil-cpp: added v20200225.2 (#17383) 2020-07-07 14:02:21 +02:00
Harmen Stoppels
1113357e35
libtree: fixed checksums (#17393)
The hash was wrongly computed for the `tar.gz` 
that Github provides, not the custom tarball which 
includes submodules as well.
2020-07-07 12:56:57 +02:00
ketsubouchi
d65a076c0d
bliss: add spaces to __DATE__ (#17385)
C++11 requires a space between literal and string macro.
2020-07-07 11:28:55 +02:00
Glenn Johnson
845139740f
mumax: new package at v3.10beta (#17398)
This PR creates a new spack package for

mumax: GPU accelerated micromagnetic simulator.

This uses the current beta version because
- it is somewhat dated, ~2018
- it is the only one that supports recent GPU kernels
2020-07-07 11:01:59 +02:00
TZ
1f87b07689
nco: added v4.8.[0,1] and v4.9.[0-3] (#17389) 2020-07-07 10:18:27 +02:00
TZ
cbaa1bca1c
ncview: added v2.1.8 (#17388) 2020-07-07 10:09:27 +02:00
Sinan
5fb6a06c37
gunrock: improved package recipe (added variants for applications and others) (#17340)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-07-07 10:02:37 +02:00
Adam Moody
6e38fc56f6 mpifileutils: add v0.10.1 2020-07-06 18:19:29 -07:00
cedricchevalier19
f0275d7e1b
Fix gcc + binutils compilation. (#9024)
* fix binutils deptype for gcc

binutils needs to be a run dependency of gcc

* Fix gcc+binutils build on RHEL7+

static-libstdc++ is not available with system gcc.
Anyway, as it is for bootstraping, we do not really care depending on
a shared libstdc++.

Co-authored-by: Michael Kuhn <michael@ikkoku.de>
2020-07-06 13:02:35 -05:00
iarspider
e62ddcb582
Add Rivet and YODA (#17372)
* Add Rivet and YODA

* Add patches

* Flake-8

* Set level for Rivet patches

* Syntax fix

* Fix dependencies of Rivet

* Update var/spack/repos/builtin/packages/rivet/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-06 10:51:36 -05:00
TZ
b3bc538df6
esmf: set ESMF_COMM=intelmpi also for ^intel-mpi (#17387)
Not only intel-parallel-studio+mpi provides Intel MPI but also
intel-mpi.
2020-07-06 11:40:11 +02:00
fcannini
29fc94e29e
psi4: fix "filter_compilers" signature (#17375) 2020-07-06 09:07:26 +02:00
Adam J. Stewart
466f7fd996
GMT: add v6.1.0 (#17384) 2020-07-05 21:06:05 -05:00
darmac
58cfe4e078
acl: fix depends error (#17341) 2020-07-05 15:28:29 -05:00
darmac
00f7577273
brpc: fix depends issue (#17347) 2020-07-05 15:27:49 -05:00
Wouter Deconinck
4e6d189a94
[opencascade] depends_on freetype, tcl, tk, gl (#17357)
* [opencascade] depends_on freetype, tcl, tk, gl

* [opencascade] new version 7.4.0p1 and url_for_version
2020-07-05 15:25:38 -05:00
iarspider
9abadd4985
New version of LHAPDF: 6.3.0 (#17367) 2020-07-05 15:23:03 -05:00
figroc
66d4bc3f3c
protobuf: add versions (#17381) 2020-07-05 15:22:31 -05:00
yellowhat
52cafe6c96
amdblis bump to 2.2. (#17369) 2020-07-05 15:22:11 -05:00