Commit graph

25286 commits

Author SHA1 Message Date
Manuela Kuhn
c076aeb192
py-jupyterlab: add new package (#26357) 2021-10-01 01:33:28 +02:00
Massimiliano Culpo
74d36076c2
ArchSpec: minor cleanup of a few methods (#26376)
* Remove vestigial code to be compatible with Spack v0.9.X
* ArchSpec: reworked __repr__ to be more adherent to common Python idioms
* ArchSpec: simplified __init__.py and copy()
2021-09-30 16:03:39 -07:00
Robert Underwood
a75c86f178
GDB: Fix for GMP and Python (#26366)
closes  #26354 and #26358

Previously we did not pass paths for GDB or GMP and ./configure would
get confused about which one to pull from.  Be more specific.

Built with all variants enabled and fixed the fixable versions and variants:
@:8.1 were fixable by limiting python versions for these to @:3.6.
7.10.1 and 7.11(.1) were fixable to build with glibc-2.25 and newer
using two long patches.
gdb 7.8 and 7.9 weren't fixable as there is no backport if the fix
to build these with glibc-2.25 and newer:
http://lists.busybox.net/pipermail/buildroot/2017-March/188055.html

Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2021-09-30 22:40:35 +00:00
Massimiliano Culpo
8ade8a77dd
Build container images on Github Actions and push to multiple registries (#26247)
Modifications:
- Modify the workflow to build container images without pushing when the workflow file itself is modified
- Strip the leading ghcr.io/spack/ from env.container env.versioned to prepare pushing to multiple registries
- Fixed CentOS 7 and Amazon Linux builds
- Login and push to Docker Hub as well as Github Action
- Add a badge to README.md with the status of docker images
2021-09-30 23:34:47 +02:00
Jen Herting
7bda430de0
[py-tabulate] added version 0.8.9 (#25974) 2021-09-30 23:02:14 +02:00
Cory Bloor
4238318de2
rocsolver: Tighten rocsolver package dependencies (#25917)
- Specify CMake minimum version more precisely
- Ensure rocBLAS is available at build time
- Limit workaround for missing rocblas include path
  to the only affected version (4.1.0)
- Make hip a build and link dependency
- Remove hip's link dependencies

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2021-09-30 22:57:28 +02:00
Robert Underwood
7694c58736
sz: fix for external python sitelib (#26067)
fixes #25973
2021-09-30 11:52:20 -07:00
bernhardkaindl
af54f7b15b
gromacs-chain-coordinate: Fix calling the test suite (#26367) 2021-09-30 18:18:03 +02:00
Harmen Stoppels
1aa7758dbb
match .spack literal, not as a regex (#26374) 2021-09-30 14:54:57 +00:00
Harmen Stoppels
727dcef2f4
Disable __skip_rocmclang again (#26187)
CMake 3.21.3 disables the broken hipcc-as-rocmclang detection again.

From the release notes:

> The AMD ROCm Platform hipcc compiler was identifed by CMake 3.21.0
> through 3.21.2 as a distinct compiler with id ROCMClang. This has been
> removed because it caused regressions. Instead:
> * hipcc may no longer be used as a HIP compiler because it interferes
>   with flags CMake needs to pass to Clang. Use Clang directly.
> * hipcc may once again be used as a CXX compiler, and is treated as
>   whatever compiler it selects underneath, as CMake 3.20 and below
>   did.
2021-09-30 16:01:17 +02:00
Harmen Stoppels
4dee7d2b22
Add a conflict for patchelf to catch errors earlier in bootstrapping (#26373) 2021-09-30 15:18:56 +02:00
Harmen Stoppels
525aa11827
Bump version from v0.16.2 to v0.16.3 (#26372) 2021-09-30 11:54:48 +00:00
Olivier Cessenat
9e70fc630e
dos2unix: new version 7.4.2 and enforce link with gettext (#26371) 2021-09-30 12:04:32 +02:00
Harmen Stoppels
b96d836a72
Move gnuconfig under the spack org (#26370) 2021-09-30 11:30:29 +02:00
Diego Alvarez
56eddf2e3c
Added OpenJDK 17, 11 for Darwin, and set preferred to 11 (#26368) 2021-09-30 11:29:36 +02:00
Maciej Wójcik
7c3b2c1aa8
gromacs-chain-coordinate: new package (#25426) 2021-09-30 04:12:37 +02:00
Shahzeb Siddiqui
ef9967c7f4
Add e4s tags (#23382)
Add 'e4s' tags for all packages according to https://github.com/E4S-Project/e4s/blob/master/E4S_Products.md
2021-09-29 17:57:52 -07:00
acastanedam
02f356159b
linux-pam: include more official (recent) releases (#26065) 2021-09-29 20:51:39 -04:00
David Beckingsale
d31830eaf5
Move new CUDA conflicts inside when('~allow-unsupported-compilers') block (#26132)
* Move new CUDA conflicts inside when('~allow-unsupported-compilers') block

Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
2021-09-30 00:22:26 +00:00
Valentin Volkl
2ea1bf84ec
py-snappy: add patch to fix dependencies (#26352)
* py-snappy: add patch to fix dependencies

* Update var/spack/repos/builtin/packages/py-snappy/req.patch

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-09-29 15:50:42 -05:00
Manuela Kuhn
0a7804f52e
py-jupyterlab: add 3.0.14, 3.0.18 and 3.1.14 (#26339) 2021-09-29 14:34:18 -05:00
Valentin Volkl
805d59d47f
geos: fix patch versions (#26351) 2021-09-29 18:32:37 +00:00
Manuela Kuhn
10638ea449
py-jupyter-packaging: add 0.7.12 and 0.10.6 (#26338)
* py-jupyter-packaging: add 0.7.12 and 0.10.6

* Update var/spack/repos/builtin/packages/py-jupyter-packaging/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-jupyter-packaging/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-09-29 18:31:32 +00:00
Howard Pritchard
6d613bded0
cray-mvapich2: add a package to support (#26273)
The format of the HPE/Cray supplied module for cray-mvapich2 on HPE apollo systems is
very different from the cray-mpich module supplied on Cray EX and XE
systems.

Recent changes to the cray-mpich package -

https://github.com/spack/spack/pull/23470

broke support for cray-mvapich2 and relies now on the structure of the
cray-mpich module to work properly.

Rather than try to support two very different vendor mpich modules
using the same spack package, just add another one specialized for
the cray-mvapich2 module.

Signed-off-by: Howard Pritchard <hppritcha@gmail.com>
2021-09-29 20:12:13 +02:00
Martin Diehl
f32feeee45
new package(s): DAMASK (damask, damask-grid, damask-mesh) (#25692) 2021-09-29 19:57:01 +02:00
Manuela Kuhn
c75e84e9f3
py-qtpy: add 1.11.2 (#26343) 2021-09-29 11:19:23 -05:00
Harmen Stoppels
7fdb879308
ca-certificates-mozilla for openssl & curl (#26263)
1. Changes the variant of openssl to `certs=mozilla/system/none` so that
   users can pick whether they want Spack or system certs, or if they
   don't want certs at all.
2. Keeps the default behavior of openssl to use certs=systems.
3. Changes the curl configuration to not guess the ca path during
   config, but rather fall back to whatever the tls provider is
   configured with. If we don't do this, curl will still pick up system
   certs if it finds them.

As a minor fix, it also adds the build dep `pkgconfig` to curl, since
that's being used during the configure phase to get openssl compilation
flags.
2021-09-29 09:05:58 -07:00
iarspider
24263c9e92
New package: py-async-lru (#26328) 2021-09-29 18:05:36 +02:00
Manuela Kuhn
7cd3af5d52
py-mffpy: add new package (#26345) 2021-09-29 17:59:50 +02:00
bernhardkaindl
4a31f0fb0f
py-mock: fix depends of @:2.0.0 and bump version (#26336)
* py-mock: fix depends of `@:2.0.0` and bump version

fixes the build of `py-gsutil`, it depends on `'py-mock@:2.0.0'`.

* Update var/spack/repos/builtin/packages/py-mock/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-mock/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Apply the other requested changes

* Add requested change: Add the python@3.6 for newer versions

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-09-29 15:39:57 +00:00
Greg Sjaardema
5132cfcc63
seacas: new release and fixes for metis/parmetis (#26310)
* seacas: new release and fixes for metis/parmetis

* Update to add sha256 checksum for latest seacas release

* Updated the documentation strings with new applications

* Fixed the metis/parmetis variants and logic depending on whether mpi
  is enabled/disabled. (There is still a zoltan issue I need to fix,
  but this will at least allow seacas to be built without
  metis/parmetis or with +mpi+parmetis.  The ~mpi+metis still needs
  work elsewhere.)

* Enable cpup, slice, zellij in +applications
2021-09-29 16:53:49 +02:00
Harmen Stoppels
9d39a1bf42
Un-unset TERM and DISPLAY (#26326)
For interactive `spack build-env`'s this is undesired behavior
2021-09-29 16:28:32 +02:00
bernhardkaindl
11278dd55a
py-monotonic: bump version to 1.6 (#26335)
Fixes `spack solve py-gsutil`: It depends on 'py-monotonic@1.4:'
2021-09-29 09:19:47 -05:00
Pat Riehecky
e45979d39a
Added OpenJDK 16.0.2 (#26322) 2021-09-29 14:19:38 +00:00
MichaelLaufer
ed54d6c926
py-netcdf4: adds parallel IO support (#26178) 2021-09-29 08:21:16 -05:00
iarspider
634b0b25c4
Add new package: py-backports-entry-points-selectable (#26329) 2021-09-29 15:09:27 +02:00
Manuela Kuhn
ac29b70d18
py-dipy: add new package (#26331) 2021-09-29 15:05:34 +02:00
Manuela Kuhn
e01947effc
py-imageio-ffmpeg: add 0.4.5, fix installation and import (#26330) 2021-09-29 14:56:16 +02:00
Manuela Kuhn
78dbac69e9
py-pyqt5-sip: add new package (#26325) 2021-09-29 14:52:29 +02:00
bernhardkaindl
80c8978691
krb5: bump version and limit depends_on('openssl') to @1 (#26332)
krb5 uses an openssl RSA API which is deprecated in OpenSSL@3.0.0
with an const/non-const mismatch.
2021-09-29 11:24:08 +00:00
Manuela Kuhn
ab6b531e10
py-argcomplete: add 1.12.3 (#26228) 2021-09-29 13:10:03 +02:00
Olli Lupton
cffa1e7f6c
Add ccache 4.4.2. (#26327) 2021-09-29 09:41:28 +00:00
Axel Huebl
c5410bd333
FFTW: NEON SIMD is float-only (#26321)
Fix on Apple Mac M1 (aarch64):
```
configure: error: NEON requires single precision
```
2021-09-29 02:40:45 +00:00
Ben Darwin
c578882bb2
itk: add version 5.2.1 (#26307) 2021-09-28 18:15:42 -07:00
Greg Sjaardema
a550416a1f
netcdf-c: Update for 4.8.1 and new download site (#26309)
NetCDF-4.8.1 has been released.

    As discussed in https://github.com/Unidata/netcdf-c/issues/2110
    (netcdf-c-4.8.1.tar.gz not on ftp site... #2110), the canonical
    download site for netCDF releases has been changed and the previous
    ftp site is no longer available.

    This PR updates the `url` to point to the new recommended download
    site and updates the sha256 checksums for the new tar files.
2021-09-28 17:21:28 -07:00
Gregory Lee
82d857dced
qhull deprecated libqhull.so in 2020.2 (#26304) 2021-09-28 16:54:30 -07:00
Manuela Kuhn
32b5669e8d
py-pytz: add 2021.1 (#26289) 2021-09-28 18:07:28 +00:00
iarspider
a2c16356a1
dire: Fix depends for new pythia version scheme (#26294)
Pythia version numbering was changed in #26255 from xyyy to x.yyy
2021-09-28 18:05:52 +02:00
Edward Hartnett
4f4984e313
wrf-io: added NOAA software maintainers, added openmp variant (#26113) 2021-09-28 08:55:09 -07:00
Tamara Dahlgren
5ace5ca7a4
Post 26211 rebase updates (#26246) 2021-09-28 08:53:59 -07:00