Commit graph

16074 commits

Author SHA1 Message Date
Jen Herting
14894a7b09
[py-crossmap] added version 0.3.9 (#17233)
* [py-crossmap] added version 0.3.9

* [py-crossmap] py-numpy not required

* [py-crossmap] py-cython must be >= 0.17
2020-06-30 09:28:13 -05:00
Jen Herting
f25d6e64f6
[ruby] fixing path to gcc such that users can use gem to install nati… (#17141)
* [ruby] fixing path to gcc such that users can use gem to install native gems to their home directory

* [ruby] working on making flake8 happier

* [ruby] Line can't really be split cleanly. Enhancing flake8's calm.

ya learn something new every day...

* [ruby] line break where requested

* [ruby] make raw string

* [ruby] only running for x86_64-linux everything else is untested

* [ruby] finding rbconfig.rb in a cross platform manner
2020-06-30 09:27:48 -05:00
Sinan
6d46fbb6f7
New package/graphblast (#17289)
* new package: GraphBlast

* polish

* add cuda_arch setup

* flake8

* the package requires cuda variant and dependency

* add comments

* define cuda_arch

* implement multiple and custom cuda arches

* tidy up, improve

* flake8

* improve style

* add variant description

* use patch method, add new version for latest commit building since master now fails

* remove gcc conflict, tidy up

* also indicate build range for boost

Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
Co-authored-by: Sinan81 <Sinan81@github>
2020-06-30 08:05:08 -05:00
Harsh Bhatia
6fb30acb77
dssp: new package at v3.1.4 (#17188)
Renamed xspp to hspp
2020-06-30 08:58:13 +02:00
Sinan
01dc8d6fc8
postgis: added package at v3.0.1 (#12635)
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Sinan81 <Sinan81@github>
2020-06-30 08:14:33 +02:00
Sebastian Gottfried
5e1cb24bec
py-mpi4py: Implement headers Property (#17295)
py-mpi4py installs its header files at a difficult-to-predict location:

    $prefix/lib/python-x.y/site-packages/mpi4py/include

With the new `headers` properties, dependent packages have now an easy
way to obtain this location:

    spec['py-mpi4py'].headers.directories[0]
2020-06-29 21:36:38 -05:00
iarspider
2de0053c08
New package: hepmcanalysis (#17296)
* [WIP] Add hepmcanalysis package

* Implement install() for hepmcanalysis

* Flake-8

Co-authored-by: iarspider <iarpsider@gmail.com>
2020-06-29 21:35:25 -05:00
Amjad Kotobi
17985959a4
R: new versions (#17297) 2020-06-29 21:33:57 -05:00
Adam J. Stewart
c8e2529eae
GDAL: add v3.1.1 (#17302) 2020-06-29 21:26:49 -05:00
h-denpo
17fa1edf32
Some files could not be created due to errors, which have been fixed. (#17250)
added support for Fujitsu compiler.
2020-06-29 21:26:26 -05:00
Fabien Bruneval
6f824b598c
cp2k: variant tuning lmax was broken (#17266)
* cp2k: variant tuning `lmax` was broken

- `spack install cp2k lmax=6` now works

* Update var/spack/repos/builtin/packages/cp2k/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/cp2k/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/cp2k/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/cp2k/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/cp2k/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/cp2k/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-06-29 21:24:25 -05:00
Fabian Brandt
4a10faff87
New package py-networkit (6.1, 7.0) (#17195) 2020-06-29 21:23:53 -05:00
iarspider
49f19e1710
New package: coin3d (#17251)
* New package: coin3d

* Update package.py

* Flake-8

* Update var/spack/repos/builtin/packages/coin3d/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Add link-time dependencies

* Add configure flags for boost; remove version 4.0.0 (doesn't compile)

Co-authored-by: iarspider <iarpsider@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-06-29 21:23:02 -05:00
Greg Becker
b52390dacc
cray compilers: fix bug with verifying cray compilers (#17303)
* fix bug with verifying cray compilers
2020-06-29 20:26:46 -05:00
Greg Becker
d71fdc9719
remove three commands that have been deprecated since v0.13.0 (#17291)
* remove three commands that have been deprecated since v0.13.0
2020-06-29 11:15:56 -05:00
Michael Kuhn
b07d38b3be
autotools: Fix config.guess detection (#17149)
The config.guess detection used a relative path that did not work in
combination with `check_call`. Use an absolute path instead.
2020-06-29 10:08:22 -05:00
Massimiliano Culpo
789d060ff6
Detect FE compilers automatically on Cray (#17267)
* cray: detect frontend compilers automatically

This commit permits to detect frontend compilers
automatically, with the exception of cce.

Co-authored-by: Gregory Becker <becker33.llnl.gov>
2020-06-29 09:53:08 -05:00
darmac
7161b33364
nfs-utils: fix compile error on debian (#17292)
use pkgconfig to detect libtirpc
2020-06-29 15:18:51 +02:00
iarspider
01357d4925
New package: fjcontrib + new variants for fastjet (#17255)
* New package: fjcontrib + new variants for fastjet

* Flake-8

* Flake-8 once more

* Update package.py

* Allow choosing which plugins to build

Build all plugins by default.

* Flake-8

* Always build all plugins

* Update package.py

Co-authored-by: iarspider <iarpsider@gmail.com>
2020-06-29 09:46:44 +01:00
George Hartzell
e6bb8360d0
Fix indentation in containerize example (#17228)
[george.hartzell@172-16-193-97 spack-explore-docker]$ spack containerize
Running `spack containerize` with the example `spack.yaml` file fails
with an error that ends like so:

```
[...]
  File "/local_scratch/hartzell/tmp/spack-explore-docker/lib/spack/external/ruamel/yaml/scanner.py", line 165, in need_more_tokens
    self.stale_possible_simple_keys()
  File "/local_scratch/hartzell/tmp/spack-explore-docker/lib/spack/external/ruamel/yaml/scanner.py", line 309, in stale_possible_simple_keys
    "could not find expected ':'", self.get_mark())
ruamel.yaml.scanner.ScannerError: while scanning a simple key
  in "/local_scratch/hartzell/tmp/spack-explore-docker/spack.yaml", line 26, column 1
could not find expected ':'
  in "/local_scratch/hartzell/tmp/spack-explore-docker/spack.yaml", line 28, column 5
```

Indenting the block string fixes the problem for me.

CentOS 7,

```
$ spack --version
0.14.2-1529-ec58f28c2
```
2020-06-29 08:58:51 +02:00
Kshitij Mehta
d27ea3be1c
codar-cheetah: added v1.1.0 and v1.0.0 (#17286) 2020-06-29 08:10:30 +02:00
Wouter Deconinck
4ea4c2e63f
geant4: depends on "qt@5: +opengl" when +qt (#17264)
The Geant4 cmake check requires Qt5OpenGL_FOUND, so we must require
the Qt5 +opengl variant. If not, the cmake phase fall through to Qt4
and fails due to a missing Qt4::QtGui target.

In Geant4InterfaceOptions.cmake:
```
  if(Qt5Core_FOUND
      AND Qt5Gui_FOUND
      AND Qt5Widgets_FOUND
      AND Qt5OpenGL_FOUND
      AND Qt5PrintSupport_FOUND)
```

Ref: https://github.com/Geant4/geant4/blob/master/cmake/Modules/Geant4InterfaceOptions.cmake#L90
(5baee230e93612916bcea11ebf822756cfa7282c, Import Geant4 10.6.0 source tree)
2020-06-29 08:09:29 +02:00
Tomoki, Karatsu
4425e83750
fujitsu-mpi: added "headers" and "libs" methods (#17253) 2020-06-29 08:06:09 +02:00
Greg Becker
77351bd287
Restore compilers.yaml default directory (#17283) 2020-06-29 08:03:22 +02:00
Seth R. Johnson
56db9647b1
Prevent libffi 3.3 from adding contradictory tuning flags (#17285)
Fixes #17187
2020-06-28 13:31:59 -05:00
Sinan
9a8e9f265e
package/qgis: add new versions (#17284)
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-06-28 13:30:58 -05:00
Amjad Kotobi
02d5b8c425
intel: added new versions (#17287) 2020-06-28 13:30:21 -05:00
Dr. Christian Tacke
7aac150617
vmc: New Package (#17282)
"""The Virtual Monte Carlo (VMC) library"""
2020-06-28 13:28:42 -05:00
darmac
68633fac5c
redis: add config file from source code (#17225)
* redis: add config file from source code

* Update var/spack/repos/builtin/packages/redis/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-06-28 13:26:04 -05:00
Axel Huebl
064618e1ea
WarpX: Development Branch (#17163)
* WarpX: Development Branch

Update the name of our development branch.

* WarpX version: develop keyword

development is not a "newest"-like keyword, but `master`/`develop`/`dev` are.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Renamed: develop version

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-06-28 01:23:11 -07:00
Greg Becker
cc28493449
make gcc build on aarch64 (#17280) 2020-06-27 18:51:11 -05:00
Axel Huebl
d7c46d8c57
CUDA: CUDAHOSTCXX Env (#16869)
This is a general CMake CUDA language hint to use the CXX
compiler has host compiler for NVCC. Seems like a good
default since we do not express the CUDA compiler in Spack
otherwise yet (e.g. no `self.compiler.cuda` or
`self.compiler.cudahostcxx`).
2020-06-27 15:36:18 -05:00
Adam J. Stewart
edf776aeb9
Add support for macOS Big Sur (#17236)
* Add support for macOS Big Sur

* Big Sur is actually macOS 11.0
2020-06-27 15:07:21 -05:00
Dr. Christian Tacke
f7aecd9d6e
perl-date-manip: New Package Date::Manip (#17259) 2020-06-27 14:54:50 -05:00
vvolkl
0ddfcf097b
[gaudi] new version, cleanup (#17268) 2020-06-27 14:42:23 -05:00
Fabian Brandt
a640befb60
Patch needed also for version 7.0 (#17269) 2020-06-27 14:41:24 -05:00
Hans Pabst
1345d30750
LIBXSMM 1.16.1 (#17274) 2020-06-27 14:39:35 -05:00
albestro
81b4c03f56
migrate to git and update commit (#17276) 2020-06-27 14:39:01 -05:00
David Gardner
00fd63f5ee
superlu-mt: add pic and int64 variants (#11361)
* add pic and int64 variants

* update to Language-specific PIC flags
2020-06-27 09:52:32 -05:00
Greg Becker
56b4abbe38
env: no automatic activation (#17258)
* env: no automatic activation

* Ensure ci rebuild jobs activate the environment (no longer automagic)

Co-authored-by: Scott Wittenburg <scott.wittenburg@kitware.com>
2020-06-26 17:20:15 -05:00
Scott Wittenburg
dfac09eade
Use json for buildcache index (#15002)
* Start moving toward a json buildcache index

* Add spec and database index schemas

* Add a schema for buildcache spec.yaml files

* Provide a mode for database class to generate buildcache index

* Update db and ci tests to validate object w/ new schema

* Remove unused temporary upload-s3 command

* Use database class to generate buildcache index

* Do not generate index with each buildcache creation

* Make buildcache index mode into a couple of constructor args to Database class

* Use keyword args for  _createtarball 

* Parse new json index when we get specs from buildcache

Now that only one index file per mirror needs to be fetched in
order to have all the concrete specs for binaries available on the
mirror, we can just fetch and refresh the cached specs every time
instead of needing to use the '-f' flag to force re-reading.
2020-06-26 17:05:56 -05:00
Greg Becker
c39983eb1a
build_environment: verify compiler executables exist are are accessible (#17260)
* build_environment: verify compiler executables exist and are accessible

* fix existing tests

* test compiler executable verification
2020-06-26 16:12:22 -05:00
Omar Padron
1ed035def6
fix sorting issue with ci workarounds (#17277) 2020-06-26 14:24:08 -05:00
cedricchevalier19
529c659bd0
First fix for SPACK_DEPENDENCIES problem when doing setup (#10715)
* First fix for SPACK_DEPENDENCIES problem when doing setup

* Get rid of transitive include path in setup.

* Export SPACK_INCLUDE_DIRS into spconfig.py
2020-06-26 14:06:43 -05:00
Adam J. Stewart
c8e6a9e535
Fix super invocation in Intel packages (#17248) 2020-06-26 14:04:35 -05:00
eugeneswalker
d8da1e6dbc
spack ci generate: allow use of --output-file <file> with wo/ preceding path (#17275) 2020-06-26 11:18:29 -07:00
Jeffrey Salmond
1602b7a561
add environment-awareness to buildcache create (#16580)
* add buildcache create test

* add functionality and test to create buildcache from environment

* use env.concretized_user_specs rather than env.roots to get concretized specs, as suggested in review from becker33
2020-06-26 10:01:12 -05:00
Greg Becker
ec108dbebd
Allow spack remove -f and spack uninstall to work on matrices (#17222)
* Allow `spack remove -f` and `spack uninstall` to work on matrices

Allow Environment.remove(force=True) to remove the concrete spec from the environment
even when the user spec cannot be removed because it is in a matrix.
2020-06-26 09:57:22 -05:00
Massimiliano Culpo
c401c63156
Allow detection for "-classic" version of CCE (#17256)
* cce: detect modules based on the classic backend

* cce: tweaked version checks for clang based options

* Added unit test for cce flags
2020-06-25 21:20:09 -05:00
Adam J. Stewart
cecd300693
py-azureml-sdk: add new package (and deps) (#17261) 2020-06-25 20:15:21 -05:00