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Author SHA1 Message Date
Milton Woods
6856972745 tk: avoid search for X headers and libraries (#11892) 2019-07-01 13:47:04 -04:00
t-karatsu
8ca5c3685a camellia: fix hdf5 dependency (#11810) 
* camellia: fix hdf5 dependency

* camellia: Add comment
 2019-07-01 13:40:53 -04:00
Justin S
b517be2c68 r-spacetime: new package at 1.2-2 (#11885) 2019-07-01 13:39:15 -04:00
Patrick Gartung
9bf9c0cec3
buildcache: add replace_prefix_bin function to deal with hard coded paths in libraries and executables. (#11882) 2019-07-01 10:16:23 -05:00
Milton Woods
0f703b7e81 py-netcdf4: depend on hdf5+hl (#11893) 2019-07-01 15:38:35 +02:00
Todd Gamblin
f51c4c5e77
readme: make list of links even tighter. 2019-06-30 23:15:37 -07:00
Todd Gamblin
af39390578 README: Tighten up text, mention the Code of Conduct in the README. 2019-06-30 23:08:33 -07:00
Todd Gamblin
9c37a4c948 meta: move CODE_OF_CONDUCT.md and CONTRIBUTING.md to .github 
- Trying to reduce the number of top-level files in Spack.

- CODE_OF_CONDUCT.md can be referenced from the README.

- CONTRIBUTING.md is only used to display a message on pull requests, and
  it still does that when in .github.
 2019-06-30 23:08:33 -07:00
Dr Owain Kenway
441401bb8b llvm: don't build CppBackend for flang versions of llvm (#11841) 
The version of LLVM used by flang is new enough that CppBackend doesn't exist.  Unfortunately, `flang-xxxxxxxx` is seen as < `3.9.0` by the version check.  

* add a special case for `flang` versions.
 2019-06-30 17:04:29 -07:00
Oliver Breitwieser
cf76a143a2 libtomlc99: Update version 
The PR for shared libraries has been merged upstream -> add new version.
 2019-06-30 16:02:08 -07:00
Todd Gamblin
4189640ee8 style: remove unnecessary NOQA exceptions 2019-06-30 16:01:23 -07:00
Todd Gamblin
600f3c1104 setup-env.sh: send cd output to /dev/null when it affects Spack 
- We've seen this a few times now where users have set up `cd` to echo
  the new directory, and it screws up `setup-env.sh`

- In the past we've said this is user error.

- Here, we just fix it by sending `cd` output to /dev/null where needed.
  - this works in bash, zsh, and dash
 2019-06-29 19:01:44 -07:00
Peter Scheibel
9c16b4a7f6 Allow uninstalling missing packages (#11874) 
Remove package access from directory_layout; add regression test to ensure
that specs can be uninstalled without a package being known
 2019-06-29 16:04:15 -07:00
Christoph Junghans
7f2e364fa1
legion: added recent releases (#11889) 2019-06-29 07:12:24 -06:00
Justin S
7f6266eef6 r-intervals: new package at 0.15.1 (#11884) 2019-06-28 19:42:55 -04:00
Mark W. Krentel
8aa8b50f91 docs: add example for an external module in packages.yaml 
Add an example of a 'modules:' entry for an external package in
packages.yaml.  The 'External Packages' section of 'Build
Customization' mentions 'paths:' and 'modules:' and gives an
example of paths, but not modules.
 2019-06-28 11:59:10 -07:00
Carson Woods
5873beb83f qthreads package: make hwloc dependency optional and add version 1.14 (#11780) 2019-06-28 11:43:06 -07:00
Andreas Baumbach
5e9437866b New package: libtomlc99 (#11811) 2019-06-28 11:16:34 -07:00
Hironori-Yamaji
d5402147f0 bib2xhtml: replace version and change the download url (#11837) 
The old version was no longer available for download
 2019-06-28 11:03:54 -07:00
Matthieu Dorier
46c1513296 PMDK package: requires ncurses dependency (#11868) 2019-06-28 10:15:06 -07:00
Toyohisa Kameyama
d8f4e0a565 OTF package: use autotools. (#11873) 2019-06-28 10:13:21 -07:00
Toyohisa Kameyama
ae8710fa36 blast-plus package: remove --with-64 on ARM. (#11877) 
This configure option is not supported on ARM
 2019-06-28 10:11:04 -07:00
Michael Kuhn
ac76e4692f likwid package: Fix build with version 4.3.4 (#11878) 2019-06-28 10:05:38 -07:00
ktsai7
d48226b260 Update package.py (#11872) 2019-06-28 09:39:59 -06:00
Michael Kuhn
d2de78ab00 fenics, llvm: Fix package names being overriden (#11879) 
Setting name within the package class allows overriding the package
name, which both packages do using several for loops.

Fixes #11789
 2019-06-28 15:59:19 +02:00
Christoph Junghans
d6ecc29e4b
portage: add v1.2.2 (#11842) 
* portage: add v1.2.2

* Update package.py

* Update package.py

* Update package.py

* Update package.py

* flake8
 2019-06-28 06:39:26 -06:00
Toyohisa Kameyama
ff877a567e Gotcha package: fixed to build on ARM. (#11840) 
Apply patch to current version which has not yet been merged in the
upstream package repo.
 2019-06-27 15:34:11 -07:00
Derick Huth
81db89b5e7 New packages: Chill and IEGenLib (#11406) 
* Add Chill package
* Add IEGenLib package, a dependency of Chill
 2019-06-27 13:41:06 -07:00
Michael Kuhn
f5f2b05c5b pkgconf: Add 1.6.1 (#11863) 2019-06-27 22:15:04 +02:00
Christoph Junghans
8a51215c36
bml: add v1.3.1 (#11856) 2019-06-27 10:57:09 -06:00
Hironori-Yamaji
c48b67ccd7 f90cache: change the download url (#11838) 
* f90cache: change the download url

* f90cache: added the download url for ver 0.99
 2019-06-27 12:55:48 -04:00
Hironori-Yamaji
9ed4db6eea tcsh: change the download url, add version 6.21.00 (#11836) 
* tcsh: change the download url, add version 6.21.00

* tcsh: change the download url

* tcsh: Fix checksum for 6.20.00
 2019-06-27 12:53:43 -04:00
Mark Olesen
0119812781 Update openfoam (#11866) 
* OpenFOAM: rationalize architecture options

- older versions of OpenFOAM had WM_ARCH_OPTION to choose a 32-bit
  build on 64-bit architectures. This is not exactly relevant anymore
  and has now been largely removed from OpenFOAM.

- simultaneously the newest version of OpenFOAM has rationalized the
  handling of special settings for KNL by rolling these into the
  compiler options. We now do the same thing here in spack.

  1. Reuse the internal variable arch_option to convey processor-specific
     optimizations and add these into the C++OPT=... statement.
  2. Drop spack support for configuring a 32-bit build on 64-bit
     hardware.

These changes can also be applied to older OpenFOAM versions, and to
various OpenFOAM forks without issue.

* update openfoam versions. New release 1906, patched 1812 version.
 2019-06-27 11:14:33 -05:00
Michael Kuhn
eb00436ec8 font-util: Add missing mkfontdir build dependency (#11865) 
Some of the fonts now included in font-util need mkfontdir to build.
 2019-06-27 15:53:05 +02:00
Michael Kuhn
5669144d22 Fix pkgconfig dependencies (#11864) 
pkgconfig is the correct virtual dependency.
 2019-06-27 14:56:42 +02:00
Toyohisa Kameyama
1c779608b2 cbtf-krell: fixed to build on ARM. (#11859) 2019-06-27 11:55:15 +02:00
Toyohisa Kameyama
977b2621f9 font-util: fix fontname. (#11860) 2019-06-27 11:54:23 +02:00
Satish Balay
85372ae102 petsc: add version 3.11.3 (#11857) 2019-06-27 07:02:03 +02:00
Michael Kuhn
75adb54d51 cdo: Remove obsolete patch (#11854) 
Commit ea3e1521fe removed version
1.9.7rc2, making the patch for gcc@9 obsolete.
 2019-06-26 19:36:41 -05:00
Michael Kuhn
0ef3b4c578 ncl: Fix build (#11855) 
ncl does not build with newer versions of gdal (or rather proj). This
also needs a small change to gdal, otherwise we end up with both proj@5
and proj@6 in the spec.
 2019-06-26 19:36:29 -05:00
Greg Becker
a0f2d6a8b9 Make yaml-cpp build with libc++ (#10504) 
- Separate `yaml-cpp` tests into variant
- Make conflict between `yaml-cpp` tests and `libc++` explicit
 2019-06-26 14:29:09 -07:00
ktsai7
ba5530bb42 added min version for gasnet and legion (#11853) 
* added min version for gasnet and legion

* Update package.py

* Update package.py

* Update package.py
 2019-06-26 14:46:18 -06:00
Douglas Duckworth
27b07811dd RELION package: add version 3.0.6 (#11851) 2019-06-26 09:57:14 -07:00
Toyohisa Kameyama
e49c101f05 X11fonts: use autotools for new architecture host (#11785) 
* Remove individual font-* packages and add them as resources of the
  font-util package
* Update font-util package to Autotools-based package, and call
  autoreconf to regenerate the old configure script
* Add font-adobe-utopia-type1
 2019-06-26 08:26:37 -07:00
Toyohisa Kameyama
b185f87c55 Add --frontend and --backend option to spack arch command (#11746) 2019-06-26 08:19:46 -07:00
Adam J. Stewart
5c5d6cad44 Rename py-pytables -> py-tables (#11847) 2019-06-25 21:32:49 -04:00
Satish Balay
ef48219f15 remove binary file that got added inadvertently via #11828 (#11848) 2019-06-25 21:31:36 -04:00
Christoph Junghans
718af821d1 pfunit: fixed a typo (#11843) 2019-06-25 14:06:52 -04:00
Chuck Atkins
f20c97168d
gnutls: workaround guile build error on macos (#11751) 2019-06-25 13:08:28 -04:00
jthies
6bbc7e8d9b phist can't be compiled with gcc older than 4.9.2 (#11677) 
* phist can't be compiled with gcc older than 4.9.2
 2019-06-25 12:53:21 -04:00