Commit graph

28427 commits

Author SHA1 Message Date
Rémi Lacroix
3b30886a3a
libtheora: fix the hash of a patch. (#30740)
Cosmetic changes only, probably because gitlab.xiph.org got updated.
2022-05-19 09:59:12 -07:00
Jordan Galby
c2fd98ccd2
Fix spack install chgrp on symlinks (#30743)
Fixes missing chgrp on symlinks in package installations, and errors on
symlinks referencing non-existent or non-writable locations.

Note: `os.chown(.., follow_symlinks=False)` is python3 only, but
`os.lchown` exists in both versions.
2022-05-19 08:50:24 -07:00
Valentin Volkl
a0fe6ab2ed
cuda: use stage dir instead of /tmp during install (#29584) 2022-05-19 17:18:18 +02:00
Harmen Stoppels
c3be777ea8
tar: add compress deps (#30641)
* remove spack dependency from package

* tar: fix compression programs, use pigz by default instead of gzip on -z
2022-05-19 11:15:13 -04:00
Jordan Galby
8fe39be3df
Don't try to mkdir upstream directory when nonexistent (#30744)
When an upstream is specified but the directory does not exist, don't
create the directory for it, it might not be yours.
2022-05-19 14:45:18 +00:00
Tiziano Müller
f5250da611
cp2k: fix unbound var use without cuda (#30736)
fixes #30631
2022-05-19 11:38:00 +02:00
David Beckingsale
c2af154cd2
RAJA and associated packages: add v2022.03.0 (#30047)
* Add raja@2022.03.0
* Add camp@2022.03.0
* Add chai@2022.03.0
* Add umpire@2022.03.1
* Latest chai, raja, umpire versions don't need submodules
* Latest chai, raja, umpire versions update CMake option names
* New umpire +device_alloc option (for latest version)
* All versions of dray are now required to build with raja@:0.14

Co-authored-by: Marty McFadden <mcfadden8@users.noreply.github.com>
2022-05-18 22:48:22 -07:00
robgics
1f6b880fff
Add license dir to config (#30135)
* Change license dir from hard-coded to a configurable item

* Change config item to be a string not an array

Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2022-05-18 18:26:42 -07:00
Teodor Nikolov
2c211d95ee
Catch2: update to 3.0.1 (#30732)
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-05-19 00:47:20 +00:00
Asher Mancinelli
c46f673c16
ExaSGD bugfixes (#30731)
* Small bug fixes for ExaSGD packages

* Add Slaven as maint for both exago and hiop
2022-05-18 15:25:24 -07:00
Todd Gamblin
8ff2b4b747
bugfix: handle new dag_hash() on old concrete specs gracefully. (#30678)
Trying to compute `dag_hash()` or `package_hash()` on a concrete spec that doesn't have
a `_package_hash` attribute would attempt to recompute the package hash.

This most commonly manifests as a failed lookup of a namespace if you attempt to uninstall
or compute the hashes of packages in exsternal repositories that aren't registered, e.g.:

```console
> spack spec --json c/htno
==> Error: Unknown namespace: myrepo
```

While it wouldn't change the already-assigned `dag_hash` value, this behavior is
incorrect, since the package file for a previously concrete spec:
  1. might have changed since concretization,
  2. might not exist anymore, or
  3. might just not be findable by Spack.

This PR ensures that the package hash can't be computed on older concrete specs. Instead
of calling `package_hash()` from within `to_node_dict()`, we now check for the `_package_hash`
attribute and only add the package_hash to the spec record if it's there.

This PR also handles the tricky semantics of computing `package_hash()` at concretization
time. We have to compute it *before* marking the spec concrete so that `to_node_dict` can
use it. But this means that the logic for `package_hash()` can't rely on `spec.concrete`,
as it is called *during* concretization. Instead of checking for concreteness, `package_hash()`
now checks `_patches_assigned()` to determine whether it should add them to the package
hash.

- [x] Add an assert to `package_hash()` so it can't be called on specs for which it
      would be wrong.
- [x] Add an `_assign_hash()` method to handle tricky semantics of `package_hash`
      and `dag_hash`.
- [x] Rework concretization to call `_assign_hash()` before and after marking specs
      concrete.
- [x] Rework content hash part of package hash to check for `_patches_assigned()`
      instead of `spec.concrete`.
- [x] regression test
2022-05-18 22:21:22 +00:00
Michael Kuhn
9e05dde28c
harfbuzz: add gobject-introspection dependency (#30715)
Fixes #30706
2022-05-18 15:13:36 -06:00
Jen Herting
b1ef5a75f0
[py-tensorflow-hub] applied patch for newer version of zlib (#30664)
* [py-tensorflow-hub] applied patch for newer version of zlib

* [py-tensorflow-hub] patch also applies to 0.11.0

* [py-tensorflow-hub] Audit fix

1. patch URL in package py-tensorflow-hub must end with ?full_index=1
2022-05-18 13:21:21 -07:00
Timothy Brown
f9aa7c611c
[WGRIB2] Pinning Jasper to v2. (#30726)
If we use v3 of Jasper, WGRIB2 fails to build due to not
finding `jpc_encode` and `jpc_decode`.
2022-05-18 09:34:22 -07:00
Timothy Brown
9a2e01e22d
[G2] Pinning Jasper to version 2. (#30728) 2022-05-18 09:33:05 -07:00
Alberto Invernizzi
2090351d7f
Add hip dependency for roc-obj-ls + add perl-uri-encode (#30721)
* add perl-uri-encode package

* add dependencies in hip for roc-obj-ls
2022-05-18 16:24:35 +02:00
Massimiliano Culpo
c775c322ec
vendored externals: update archspec (#30683)
- Better support for 164fx
- Better support for Apple M1(pro)
2022-05-18 11:31:20 +02:00
Harmen Stoppels
1185eb9199
Compiler wrapper: fix globbing and debug out.log bell chars (#30699)
* Disable globbing

* Split on bell char when dumping cmd to out.log
2022-05-18 09:06:54 +02:00
Ryan Marcellino
51fa8e7b5e
py-pytecplot: new package (#30708)
* py-pytecplot: new package

* fix copyright year

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

* use one variant for all extras

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-05-18 01:47:17 +00:00
Mikael Simberg
f505c50770
Add tracy (#30588)
Co-authored-by: Mikael Simberg <mikael.simberg@iki.if>
2022-05-17 18:10:45 -07:00
Mark W. Krentel
2fdc817f03
hpctoolkit: add version 2022.05.15 (#30710) 2022-05-17 18:05:12 -07:00
Michael Kuhn
e1d0b35d5b
gobject-introspection: add 1.72.0 (#30714)
Newer versions of gobject-introspection require Meson to build. Convert
the package into a hybrid one that still supports older versions using
Autotools.
2022-05-17 17:59:54 -07:00
Sreenivasa Murthy Kolam
ace5a7c4bf deprecate rocm releases-ROCm-4.2.0,ROCm-4.3.0,ROCm-4.3.1 (#30709) 2022-05-17 14:11:32 -07:00
kwryankrattiger
a91ae8cafe
ecp-data-vis-sdk: Drop fortran from ascent spec. (#30707) 2022-05-17 16:53:52 -04:00
Chuck Atkins
b9e3ee6dd0
glew: Fix glu and glx dependencies (#30705) 2022-05-17 10:19:19 -07:00
iarspider
10ea0a2a3e
Update rivet to 3.1.6, yoda to 1.9.5; fix recipes (#30702)
* Update rivet to 3.1.6, yoda to 1.9.5; fix recipes

* Use filter_compiler_wrappers instead of custom post-install step
2022-05-17 10:17:24 -07:00
Harmen Stoppels
d6f8ffc6bc
add julia 1.6.6 (#30703) 2022-05-17 09:52:46 -07:00
haralmha
02be2f27d1
flatbuffers: Add version 2.0.6 (#30704) 2022-05-17 09:51:02 -07:00
Adam J. Stewart
dfd0702aec
GDAL: deprecate 2.X (#30668) 2022-05-17 08:45:55 -07:00
Massimiliano Culpo
f454a683b5
Mark test_repo_last_mtime xfail on Python < 3.5 (#30696) 2022-05-17 12:45:52 +02:00
Chuck Atkins
d7d0c892d8
silo: Make HDF5 version deps more robust (#30693) 2022-05-17 04:26:35 -04:00
snehring
d566330a33
pindel: fixing compilation issues for gcc5+ (#28387) 2022-05-17 09:45:08 +02:00
Alex Hedges
446cbf4b5a
sed: add v4.8.0, set gnu_mirror_path per version (#30666) 2022-05-17 09:43:01 +02:00
Tim Haines
5153c9e98c
boost: constrain context-impl variant (#30654) 2022-05-17 09:42:19 +02:00
h-murai
d74f2d0be5
petsc: fix an error about handling a provider of Scalapack. (#30682) 2022-05-17 09:33:49 +02:00
Jianshen Liu
021b65d76f
cppcheck: add v2.7 (#30698) 2022-05-17 07:29:46 +00:00
Adam J. Stewart
45312d49be
Bazel: remove maintainer (#30697) 2022-05-17 09:29:22 +02:00
Chuck Atkins
3fcd85efe9
autoconf-archive: Patch for nvhpc support and propagate search dirs (#30692) 2022-05-17 03:29:42 +00:00
Alberto Madonna
6f3a082c3e
runc: symlink sbin to bin to find it in $PATH (#30691) 2022-05-17 02:48:04 +02:00
stepanvanecek
23e2820547
sys-sage: new spack package (#30570)
* sys-sage - adding new package

* sys-sage: updated release verison

* sys-sage: remove FIXMEs from the package

* add libllvm dependency

* sys-sage: remove unnecessary libllvm dependency

Co-authored-by: Stepan Vanecek <stepan.vanecek@tum.de>
2022-05-16 17:01:34 -07:00
Sreenivasa Murthy Kolam
22b999fcd4
Add miopentensile-new recipe for ROCm-5.0.0 . ROCm-5.1.0 release (#29313)
* miopentensile-new recipe for rocm-5.0.0 release

* fix style checks

* update the version for 5.1.0 release, avoid git download
2022-05-16 16:19:35 -07:00
Michael Kuhn
1df7de62ca
py-cffconvert: new package (#30694) 2022-05-16 23:16:32 +00:00
andymwood
97ec8f1d19
Avoid calling a method on a NoneType object (#30637) 2022-05-16 21:59:08 +00:00
iarspider
63b6e484fc
sigcpp: protect from missing prefix.share folder (#30686) 2022-05-16 13:34:57 -07:00
Nick Forrington
2b12d19314
arm-forge: Versions up to 22.0.1 + minor updates (#30689)
* arm-forge: Download via HTTPS

Update download URL to use HTTPS (rather than HTTP)

* arm-forge: Allow +probe to depend on python3

Allow python dependency required for arm-forge+probe to be python3 as
well as 2.7.x

* arm-forge: Add versions up to 22.0.1
2022-05-16 14:30:19 -06:00
Francesco Giordano
c37fcccd7c
aws-parallelcluster: add v2.11.7 (#30685) 2022-05-16 14:29:53 -06:00
Michael Kuhn
6034b5afc2
fix pkgconfig dependencies (#30688)
pkgconfig is the correct dependency, pkg-config is a provider of it.
2022-05-16 14:01:41 -06:00
Michael Kuhn
17bc937083
libfuse: add utils variant (#30675)
By default, libfuse install helper programs like `fusermount3`, which
are mostly useless if not installed with setuid (that is, `+useroot`).

However, their presence makes it complicated to use globally installed
versions, which can be combined with a Spack-installed FUSE library.

In particular, on systems that have a setuid fusermount3 binary, but no
libfuse-dev installed, it is nice to be able to build libfuse with Spack, and
have it call the system setuid executable.
2022-05-16 13:01:44 -06:00
renjithravindrankannath
ad8db0680d
Correcting include and library paths using patch file for RVS (#30294)
* Correcting include and library paths using patch file for RVS to build
following library files in spack.
libperf.so.0.0
libpebb.so.0.0
libiet.so.0.0
libgst.so.0.0
libpqt.so.0.0
libmem.so.0.0
libbabel.so.0.0

* Correcting include and library paths using patch file for RVS to build
following library files in spack.
libperf.so.0.0
libpebb.so.0.0
libiet.so.0.0
libgst.so.0.0
libpqt.so.0.0
libmem.so.0.0
libbabel.so.0.0

* Replacing ROCM_PATH with RPATH in the deviceid.sh before installing in Spack build.

* Reducing multiple enviroment variable for HIP and HSA path
2022-05-16 09:44:59 -07:00
estewart08
4f033b155b
[AMD][rocm-openmp-extras] - Update versions 5.0.0 through 5.1.0. (#30501)
- Removed gl dependency.
- Specify clang as cmake compiler as gcc was being
  improperly picked up. As a result, ffi include
  path was needed in C/CXX flags.

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-05-16 09:22:48 -07:00