Commit graph

36029 commits

Author SHA1 Message Date
Scott Wittenburg
1b14170bd1 gitlab ci: fix untouched spec pruning on windows (#44279)
Use correct path separator in get_all_package_diffs for all platforms.
Ensures correct package change computation on Windows when pruning unchanged specs in Gitlab CI
2024-07-01 16:56:31 +02:00
Massimiliano Culpo
a3bc9dbfe8 Make strong preferences even stronger (#44373)
Before this PR, if Spack could see a possibility to reuse a spec that
doesn't match a strong preference, it would do so. After the PR, a
strong preference would take precedence.
2024-07-01 16:56:31 +02:00
Greg Becker
e7c86259bd bugfix: external detection for compilers with os but not target (#44156)
avoid calling `spec.target` when None.

When an external compiler package has an `os` set but no `target` set, Spack
currently falls into a codepath that calls `spec.target` (which itself calls
`spec.architecture.target.Microarchitecture`) when `spec.architecture.target`
is None, throwing an error.

e.g.

```
packages:
  gcc:
    externals:
    - spec: gcc@12.3.1 os=rhel7
      prefix: /usr
```

---------

Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2024-07-01 16:56:31 +02:00
Massimiliano Culpo
2605aeb072 ASP-based solver: fix reusing externals on linux (#44316)
We need to tell clingo the libc compatibility of external nodes
in buildcaches or stores, to allow reuse.
2024-07-01 16:56:31 +02:00
Massimiliano Culpo
94536d2b66 Enforce consistency of gl providers (#44307)
* glew: rework dependency on gl

This simplifies the package and ensures a single gl implementation is
pulled in. Before we were adding direct dependencies, and those are
not unified through the virtual.

* mesa-demos: rework dependency on gl

This simplifies the package and ensures a single gl implementation is
pulled in. Before we were adding direct dependencies, and those are
not unified through the virtual.

* mesa-glu: rework dependency on gl

This simplifies the package and ensures a single gl implementation is
pulled in. Before we were adding direct dependencies, and those are
not unified through the virtual.

* paraview: fix dependency on glew

* mesa: group dependency on when("+glx")

* Add missing dependency on libxml2

* paraview: remove the "osmesa" and "egl" variant

Instead, enforce consistency using the "gl" virtual that allows
only one provider.

* visit: remove osmesa variant

* Disable paraview in the aws-isc stacks

* data-vis-sdk: rework constrains to enforce front-ends

* e4s-power: remove redundant paraview

* Pipelines: update osmesa variants

* trilinos-catalyst-ioss-adapter: make gl a run dependency
2024-07-01 16:56:31 +02:00
Massimiliano Culpo
5e580fc82e Remove mesa18 and libosmesa (#44264)
* Remove mesa18 and libosmesa

mesa18 was introduced in #19528 as a way to maintain the old
autotools build of mesa separate from the new meson build.

We could add a second build system to mesa, but since mesa18 has
been deprecated for a long time, we'll just remove it.

libosmesa was used to multiplex the gl provider between mesa18
and mesa, and is thus unecessary. Remove it to reduce complexity
in the graphical stack.

* Remove references to mesa18 and libosmesa

* vtk: rework dependency on gl and osmesa

* memsurfer: rework dependency on vtk

* visit: minimal fix to avoid having both osmesa and glx
2024-07-01 16:56:31 +02:00
Harmen Stoppels
195bad8675 Prefer libiconv for iconv (#44335)
`glibc` and `musl` provide a basic implementation of `iconv` (`iconv`,
`iconv_open`, `iconv_close`), but in practice the installation may be
missing the character encoding methods to make them usable. On Fedora
for example, users need to

```yum install glibc-gconv-extra```

to get the character encodings that `gettext` requires during configure,
namely EUC-JP. Users may not have permissions to install the missing
parts of glibc.

Since Spack can install `libiconv`, it is simpler to use that by
default.
2024-07-01 16:56:31 +02:00
Harmen Stoppels
bd9f3f100a gcc: use -rpath {rpath_dir} not -rpath={rpath dir} (#44315)
to make macOS's linker happy.
2024-07-01 16:56:31 +02:00
Mosè Giordano
b5962613a0 suite-sparse: improve setting of the libs property (#44214)
on some distros it is in lib64/
2024-07-01 16:56:31 +02:00
Massimiliano Culpo
cbcfc7e10a Demote a warning to debug message, if C compiler is not there (#44182) 2024-07-01 16:56:31 +02:00
Massimiliano Culpo
579fadacd0 ASP-based solver: fix version optimization for roots (#44272)
This fixes a bug occurring when two root specs need to select
old versions, and these versions have the same penalty in the
optimization. This sometimes caused an older version to be
preferred to a more recent one.

The issue was the omission of `PackageNode` in the optimization
tuple.
2024-07-01 16:56:31 +02:00
Chris Green
b86d08b022 git: bump v2.39 to 2.45; deprecate unsafe versions (#44248) 2024-07-01 16:56:31 +02:00
Scott Wittenburg
02d62cf40f oci buildcache: handle pagination of tags (#43136)
This fixes an issue where ghcr, gitlab and possibly other container registries paginate tags by default, which violates the OCI spec v1.0, but is common practice (the spec was broken itself). After this commit, you can create build cache indices of > 100 specs on ghcr.

Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2024-07-01 16:56:31 +02:00
Harmen Stoppels
97369776f0 build_environment.py: deal with rpathing identical packages (#44219)
When multiple gcc-runtime packages exist in the same link sub-dag, only rpath
the latest.
2024-07-01 16:56:31 +02:00
Howard Pritchard
47af0159dc py-matplotlib: qualify when to do a post install (#44191)
* py-matplotlib: qualify when to do a post install

Older versions of py-matplotlib don't seem to have some of the
files that the post install step is trying to install.
Looks like the files first appeared in 3.6.0 and later.

Signed-off-by: Howard Pritchard <hppritcha@gmail.com>

* Change install paths for older matplotlib

---------

Signed-off-by: Howard Pritchard <hppritcha@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-07-01 16:56:31 +02:00
Alec Scott
db6ead6fc1 rust: fix v1.78.0 instructions (#44127) 2024-07-01 16:56:31 +02:00
Harmen Stoppels
b4aa2c3cab glibc: detect from "Free Software Foundation" not "gnu" (#44154)
which should be more generic
2024-07-01 16:56:31 +02:00
Harmen Stoppels
4108de1ce4 Set version to v0.22.1.dev0 2024-07-01 16:56:31 +02:00
Todd Gamblin
5fe93fee1e Update CHANGELOG.md for v0.22.0 2024-05-12 02:06:28 +02:00
Todd Gamblin
8207f11333 Bump version to v0.22 2024-05-11 17:54:12 +02:00
Todd Gamblin
5bb5d2696f changelog: add changes form 0.21.1 and 0.21.2 (#44136)
These changes were added to the release branch but did not make it onto `develop`.
2024-05-11 17:48:27 +02:00
Harmen Stoppels
55f37dffe5 oci: improve default_retry (#44132)
Apparently urllib can throw a range of different exceptions:

1. HTTPError
2. URLError with e.reason set to the actual exception
3. TimeoutError from getresponse, which is not wrapped
2024-05-11 15:44:40 +02:00
Harmen Stoppels
252a5bd71b PythonExtension: fix issue where package does not extend python (#44109) 2024-05-10 10:48:06 +02:00
Massimiliano Culpo
f55224f161 Fix filtering external specs (#44093)
When an include filter on externals is present, implicitly
include libcs.

Also, do not penalize deprecated versions if they come
from externals.
2024-05-09 20:48:43 +02:00
Massimiliano Culpo
189ae4b06e CI/Update macOS runners: macos-latest switched to macos-14 (#44094)
macos-latest switched to macos-14, so now we are running
two identical jobs.
2024-05-09 20:48:43 +02:00
Harmen Stoppels
5e9c702fa7 gcc: use -idirafter for libc headers (#44081)
GCC C++ headers like cstdlib use `#include_next <stdlib.h>` to wrap libc
headers. We're using `-isystem` for libc, which puts those headers too
early in the search path. `-idirafter` fixes this so `include_next`
works.
2024-05-08 20:45:39 +02:00
Harmen Stoppels
965bb4d3c0 gitlab ci: tutorial: add julia and vim (#44073) 2024-05-08 14:19:22 +02:00
Todd Gamblin
354f98c94a r: patch R-CVE-2024-27322 for r@3.5:4.3.3 (#44050)
Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-05-08 14:19:22 +02:00
Tamara Dahlgren
5dce480154 Remove dead environment creation code (#44065) 2024-05-08 14:19:22 +02:00
Richarda Butler
f634d48b7c Include concrete environments with include_concrete (#33768)
Add the ability to include any number of (potentially nested) concrete environments, e.g.:

```yaml
   spack:
     specs: []
     concretizer:
         unify: true
     include_concrete:
     - /path/to/environment1
     - /path/to/environment2
```

or, from the CLI:

```console
   $ spack env create myenv
   $ spack -e myenv add python
   $ spack -e myenv concretize
   $ spack env create --include-concrete myenv included_env
```

The contents of included concrete environments' spack.lock files are
included in the environment's lock file at creation time. Any changes
to included concrete environments are only reflected after the environment
is re-concretized from the re-concretized included environments.

- [x] Concretize included envs
- [x] Save concrete specs in memory by hash
- [x] Add included envs to combined env's lock file
- [x] Add test
- [x] Update documentation

    Co-authored-by: Kayla Butler <<butler59@llnl.gov>
    Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.co
m>
    Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
    Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-05-08 14:19:22 +02:00
Massimiliano Culpo
4daee565ae Update the tutorial command to point to releases/v0.22 (#44056) 2024-05-08 14:19:22 +02:00
Massimiliano Culpo
8e4dbdc2d7 Bump removal version in deprecation messages (#44064) 2024-05-08 14:19:22 +02:00
Harmen Stoppels
4f6adc03cd gitlab: dont build paraview for neoverse v2 (#44060) 2024-05-08 14:19:22 +02:00
Massimiliano Culpo
f7afd67a26
Remove spurious ASP debug lines (#44051) 2024-05-07 11:28:38 +02:00
psakievich
d22bdc1c4e
certs: fix interpolation and disallow relative paths (#44030) 2024-05-07 11:16:32 +02:00
Mikael Simberg
540f9eefb7
mold: Add 2.30.0 and 2.31.0 (#44034) 2024-05-07 10:41:13 +02:00
Massimiliano Culpo
2db5bca778
Warn users of the future removal of platform=cray (#43980) 2024-05-07 10:30:23 +02:00
Harmen Stoppels
bcd05407b8
llnl.util.tty.color._force_color: init in global scope (#44036)
Currently SPACK_COLOR=always is not respected in the build process on
macOS, because the global `_force_color` is re-evaluated in global scope
during module setup, where it is always `None`.

So, move global init bits from main.py to the module itself.
2024-05-07 09:49:46 +02:00
John W. Parent
b35ec605fe
python-venv: use correct python name for which call (#44048) 2024-05-07 09:32:44 +02:00
Massimiliano Culpo
0a353abc42
Fix issues in packages with the new release of archspec (#44037) 2024-05-07 09:20:34 +02:00
Massimiliano Culpo
e178c58847
Respect requests when filtering reused specs (#44042)
Some specs which were excluded from reuse,
are currently added back to the solve when
we traverse dependencies of other reusable
specs.

This fixes the issue by keeping track of what
we can explicitly reuse.
2024-05-07 09:06:51 +02:00
Massimiliano Culpo
d7297e67a5
Maintenance for the "bootstrap" workflow in CI (#44031)
Removed a lot of duplication.

Fixed an issue in containers, leading to false negative
2024-05-07 08:49:53 +02:00
snehring
ee8addf04a
neic-finitefault: adding new package and dependencies (#44032)
* neic-finitefault: adding new package
* py-obspy: adding new package
* py-okada-wrapper: adding new package
* py-pygmt: adding new package
* py-pyrocko: adding new package

---------

Signed-off-by: Shane Nehring <snehring@iastate.edu>
2024-05-06 15:45:32 -07:00
Jon Rood
fd3cd3a1c6
amr-wind: updates and fixes (#43993)
* Updates and fixes for AMR-Wind.

* Add versions and update openfast constraints.

* Style.

* Fix version.
2024-05-06 13:31:29 -06:00
Garth N. Wells
e585aeb883
(py)-fenics-dolfinx: version update (#44002)
* Update DOLFINx to v0.8
* Fix typo
2024-05-06 12:11:02 -07:00
James Taliaferro
1f43384db4
Add LSP client extension for Kakoune (#44000)
* new package: kakoune-lsp
* blacken
* add myself as a maintainer
2024-05-06 11:18:45 -07:00
Adam J. Stewart
814b328fca
py-torchmetrics: add v1.4.0 (#44027) 2024-05-06 10:21:20 -07:00
Harmen Stoppels
125206d44d
python: always use a venv (#40773)
This commit adds a layer of indirection to improve build isolation with 
and without external Python, as well as usability of environment views.

It adds `python-venv` as a dependency to all packages that `extends("python")`, 
which has the following advantages:

1. Build isolation: only `PYTHONPATH` is considered in builds, not 
   user / system packages
2. Stable install layout: fixes the problem on Debian, RHEL and Fedora where 
   external / system python produces `bin/local` subdirs in Spack install prefixes. 
3. Environment views are Python virtual environments (and if you add 
   `py-pip` things like `pip list` work)

Views work whether they're symlink, hardlink or copy type.

This commit additionally makes `spec["python"].command` return 
`spec["python-venv"].command`. The rationale is that packages in repos we do 
not own do not pass the underlying python to the build system, which could still 
result in incorrectly computed install layouts.

Other attributes like `libs`, `headers` should be on `python` anyways and need no change.
2024-05-06 16:17:35 +02:00
John W. Parent
a081b875b4
proj: patch for modern cmake (#43780) 2024-05-06 16:01:10 +02:00
Harmen Stoppels
a16ee3348b
Do not cache indices in Gitlab (#44029) 2024-05-06 15:54:21 +02:00