alalazo
ec8cc2b528
PYTHONPATH : python patches methods for its extensions
2016-03-18 14:40:53 +01:00
Ben Morgan
076cc764a7
Add additional suffixes for GCC compiler
2016-03-18 11:26:22 +00:00
alalazo
f9438c75d0
Merge branch 'develop' of https://github.com/LLNL/spack into features/env_objects_flying_around
2016-03-18 10:26:34 +01:00
Erik Schnetter
f3ea0420f8
Import recent changes
2016-03-17 21:53:13 -04:00
Erik Schnetter
84b7cd593f
Merge branch 'develop' into correct-cc
...
# Conflicts:
# lib/spack/env/cc
2016-03-17 21:52:24 -04:00
Todd Gamblin
90268876f7
Change sanity_check_[file|dir] to sanity_check_is_[file|dir], per #554
...
- Add documentation as well.
2016-03-17 18:49:58 -07:00
alalazo
ac394718ec
python : implemented possible solution
2016-03-17 18:22:07 +01:00
alalazo
e673127263
package : added documentation
2016-03-17 18:11:23 +01:00
alalazo
38c3c84969
environment : added caller information
2016-03-17 17:37:33 +01:00
alalazo
3da4d6664b
environment : simplified hierarchy according to comments in review
2016-03-17 15:38:08 +01:00
alalazo
f0f0663d1b
package : split environment_modifications
into setup_environment
and setup_dependent_environment
.
...
package : renamed `module_modifications` to `modify_module` for consistency
2016-03-17 15:11:39 +01:00
alalazo
9cdd79e33f
modules : restored previous logic for path inspection
2016-03-17 14:14:18 +01:00
Adam J. Stewart
bb04d5cc63
Fix grammar in mirrors documentation
2016-03-16 14:27:22 -05:00
alalazo
ac762e95a6
modules : removed dead code
2016-03-16 16:23:02 +01:00
alalazo
597727f8be
tclmodules : added hooks to process EnvironmentModifications objects
2016-03-16 15:19:13 +01:00
alalazo
b45ec3f04e
environment : simplified modification of the environment
2016-03-16 10:55:28 +01:00
alalazo
b2c98feea4
Merge branch 'develop' of https://github.com/LLNL/spack into features/env_objects_flying_around
2016-03-16 09:02:35 +01:00
Todd Gamblin
7eca383b10
Add sanity check paths to packages; fix #505
2016-03-15 17:16:04 -07:00
Matthew LeGendre
108ea1522a
Merge pull request #549 from LLNL/bugfix/gh538-less-greedy-concretize
...
Bugfix/gh538 less greedy concretize
2016-03-15 16:18:54 -07:00
Todd Gamblin
15bbd088e6
Fix #551 : version bug in spack create
...
- `spack create` now sets a proper version in generated file, based on
the filename, even if it can't find any tarballs for the package.
2016-03-15 14:38:06 -07:00
alalazo
c8cc6f4fc1
test : fix for python 2.6
2016-03-15 16:59:29 +01:00
alalazo
ccced9f290
package : optimized imports
2016-03-15 15:12:39 +01:00
alalazo
cc3d9f4eb7
environment : added test, modified docs
2016-03-15 15:09:35 +01:00
alalazo
572cb93bf8
package : renamed setup_dependent_environment
to module_modifications
2016-03-15 14:05:30 +01:00
alalazo
c85888eb57
package : added environment_modifications
2016-03-15 13:36:41 +01:00
alalazo
bcea1df01c
environment : refactoreded set_build_environment_variables
2016-03-15 10:49:33 +01:00
alalazo
f20247ae55
environment : refactoreded set_compiler_environment_variables
2016-03-15 10:08:54 +01:00
alalazo
f9923452b3
environment : added machinery to collect modifications to the environment and apply them later
2016-03-14 14:35:48 +01:00
Todd Gamblin
f2761270f3
Make concretization less greedy: add backtracking for virtuals.
...
- `_expand_virtual_packages` now gets a candidate list and will try
all the candidates.
- Good news: If the first virtual in the list conflicts with something else in
the spec, we'll keep trying until we find a good one.
- Bad news: Only looks as far as the next normalize(); can't see
conflicts further ahead than that if they're inevitable
some other virtual expansion.
- Refactor `concretize.py` to keep all the nasty spec graph stitching in
`spec.py`. This is more similar to before externals support.
- `concretize.py` now just returns a list of candidates sorted by
ABI compatibility to `_expand_virtual_packages`, and `spec.py`
handles testing the candidates.
- Refactor the way external paths are handled in `config.py` and `concretize.py`:
- previously, `spec_externals` returned spec/path pairs. Now it
returns specs with `external` set. Makes code in `concretize.py`
more natural.
2016-03-14 05:04:01 -07:00
Todd Gamblin
f45b8b1083
Add some tests for packages with multiple virtual dependencies.
...
- Added mock `hypre` package, depends on `lapack` and `blas`.
- test cases where some packages provide both `lapack` and `blas`, but
others do not.
2016-03-14 05:02:50 -07:00
Todd Gamblin
05c761dee9
Add package_class
method to spec.
...
- Shouldn't call .package from within things like normalize() and
concretize() beacuse spec may be inconsistent.
- Add `.package_class` property so that we can get at package metadata
without constructing a Package with a Spec.
- should be faster than `.package` was, anyway. Use where possible.
2016-03-14 04:59:29 -07:00
Todd Gamblin
003fd4d834
Optimize __eq__ and __ne__ in key_ordering
...
- use `is` when possible before calling `_cmp_key()`
2016-03-14 04:55:30 -07:00
Elizabeth F
5c865b9b70
Fixed typo in typo fix.
2016-03-13 19:44:04 -04:00
Elizabeth F
3383486adc
Fixed typo bug. Made error comment more explicit
2016-03-13 19:39:45 -04:00
becker33
3060f27909
Merge pull request #536 from adamjstewart/fixes/doc_typos
...
Documentation typo fixes
2016-03-11 10:53:57 -08:00
Adam J. Stewart
bae03404f4
Documentation typo fixes
2016-03-11 12:51:45 -06:00
Matthew LeGendre
1c7f754e5b
Invert and rename the nobuild
option in package.yaml configs to buildable
.
2016-03-11 10:04:08 -08:00
alalazo
1d70b590fc
build_environment : fixed minor spelling errors and a few style issues
2016-03-11 13:20:57 +01:00
Todd Gamblin
f40c78a064
Merge pull request #532 from mplegendre/bugfix/ordering_satisfies
...
Fix issue with preferred satisfies not being respected
2016-03-10 21:50:40 -08:00
Matthew LeGendre
ac88cab68f
Fix issue with preferred satisfies not being respected
2016-03-10 17:00:27 -08:00
Todd Gamblin
30df1c838d
Merge pull request #531 from mplegendre/bugfix/github-530
...
Fix type error that was causing mis-ordering of compiler versions
2016-03-10 16:31:52 -08:00
Matthew LeGendre
4693af0736
Fix type error that was causing mis-ordering of compiler versions
2016-03-10 16:23:35 -08:00
Todd Gamblin
2bbf42b49d
Indentation change.
2016-03-10 16:18:11 -08:00
Todd Gamblin
670024cf77
Merge branch 'mplegendre-features/external-packages' into develop
2016-03-10 10:07:08 -08:00
alalazo
30adc4c9b8
cc : handle spaces in folders?
2016-03-10 14:59:31 +01:00
alalazo
78ef0618bc
cc : converted indents to spaces
2016-03-10 14:35:09 +01:00
Massimiliano Culpo
7ae6c62ddb
Fixed shell quoting error
2016-03-10 14:08:43 +01:00
Massimiliano Culpo
835b47c196
Merge branch 'develop' of https://github.com/LLNL/spack into fixes/intel_openmpi
2016-03-10 13:18:03 +01:00
Todd Gamblin
c4fddcc6e9
Add 'provders' back into packages.yaml schema
2016-03-10 03:15:49 -08:00
Todd Gamblin
b637f75164
Merge branch 'mplegendre-features/external-packages' into develop
2016-03-10 02:04:44 -08:00
Todd Gamblin
82b7067fdf
Refactored external packages slightly.
...
- Move `Spec.__cmp__` out of spec, into concretize as `cmp_specs`.
- `Spec.__cmp__` was never called (except explicitly) due to rich
comparison operators from `key_ordering`
- Refactor `_find_other_spec` to free function `find_spec`. Add a test
for it to make sure it works.
2016-03-10 01:29:55 -08:00
Todd Gamblin
1fe196f95c
whitespace and formatting
2016-03-10 01:29:55 -08:00
Todd Gamblin
048c406f49
Remove vestigial variants in directory name.
2016-03-10 01:29:54 -08:00
Todd Gamblin
b0572a5462
Minor tweaks to abi code.
2016-03-10 01:29:54 -08:00
Todd Gamblin
0244d794cd
remove unnecessary import
2016-03-10 01:29:54 -08:00
Todd Gamblin
b0377da771
update mirror config documentation.
...
- mirrors.yaml uses Spack's OrderedDict rather than lists.
2016-03-10 01:29:53 -08:00
Todd Gamblin
52cdcdde76
Fix #525 : sbang handles symlinks & directories properly.
2016-03-09 17:15:10 -08:00
Todd Gamblin
f56939c16c
Add unit test for sbang patching.
2016-03-09 17:13:41 -08:00
Matthew LeGendre
dd0ae255ad
Merge branch 'features/external-packages' of github.com:mplegendre/spack into features/external-packages
...
Conflicts:
lib/spack/docs/site_configuration.rst
2016-03-09 16:18:37 -08:00
Matthew LeGendre
1f06dd40f7
Update documentation for new packages.yaml config format.
2016-03-09 16:11:53 -08:00
Matthew LeGendre
a384ad5b12
Fix problem with pure integer arguments in preferred versions list (e.g, 2 instead of 2.7.3)
2016-03-09 16:11:33 -08:00
Todd Gamblin
ca10229565
Fixes #524
...
- Had attempted to add more functionality by assigning different
meanign None, True, and False values "keep_stage" (where False was
"always delete").
- Turns out that's not really worth the complexity. Having the third
"always delete" sense is hardly ever useful but makes the code hard
to understand.
2016-03-09 14:56:21 -08:00
Matthew LeGendre
87db69478d
Merge branch 'develop' into features/external-packages
...
Conflicts:
lib/spack/spack/package.py
2016-03-09 11:09:37 -08:00
Luigi Calori
bf4d51ea0b
fix error exit when doing spack patch without parameters, same as spack stage
2016-03-09 09:27:53 -08:00
Todd Gamblin
9c61843737
Fix bugs in DIYStage: fetch & context handling.
...
- DIYStage needs to be a context handler
- DIYStage.fetch needs to take 2 args.
2016-03-08 13:58:41 -08:00
Todd Gamblin
df84677d16
Make diy generate verbose build output by default.
...
- added -q option to shut it up
2016-03-08 13:57:13 -08:00
Todd Gamblin
a1be45d0e7
Fix bug with setting module-scope vars in derived package classes.
2016-03-08 13:56:44 -08:00
Todd Gamblin
a4861a3072
Minor changes/bugfixes on md5/checksum PR
2016-03-08 10:39:46 -08:00
Todd Gamblin
747855b960
Merge branch 'fixes/md5' of git://github.com/epfl-scitas/spack into epfl-scitas-fixes/md5
2016-03-08 09:12:57 -08:00
Todd Gamblin
31cebb969a
Merge pull request #504 from LLNL/bugfix/github-502
...
Bugfix/GitHub 502: Error: No spec file found at path
2016-03-08 03:43:52 -08:00
Todd Gamblin
214deeda54
Merge branch 'features/noexpand' into develop
...
Conflicts:
lib/spack/llnl/util/filesystem.py
2016-03-08 03:29:57 -08:00
Todd Gamblin
5aadb6df19
Fixes #502 . Create install prefix before build, clean up do_install.
...
- Fix bug introduced during merge of stage refactor.
- install prefix was not created before build_environment.fork()
- build_environment.fork() calls setup_dependent_environment
- python's setup_dependent_environment can inadvertently create
the install prefix before directory_layout expects it.
- Clean up Package.do_install:
- simplify control flow: parent process now entirely responsible for
creating/destroying the install prefix. cleanup is now in one place.
- Hoisting cleanup out of the child improves nesting of try/catch in
`real_work`.
- `real_work` renamed to `build_process`
2016-03-08 02:50:26 -08:00
alalazo
77ec27c730
fixed bug : similar issues in checksum and md5 as were solved in ad103dcafa
2016-03-08 11:09:41 +01:00
Todd Gamblin
96e1b2d25c
Merge pull request #486 from RemoteConnectionManager/paraview_fix
...
Paraview new version
2016-03-07 02:48:12 -08:00
Todd Gamblin
4d1703fc06
Merge branch 'features/repos-doc-fix' into develop
2016-03-07 02:40:59 -08:00
Todd Gamblin
12ddf241a5
Fix code block in docs.
2016-03-07 02:39:14 -08:00
Todd Gamblin
547933e7e4
Fix bug in -Xlinker argument handling
...
- also update test to match.
2016-03-07 01:48:26 -08:00
Todd Gamblin
f2bcc6cc35
Merge branch 'eschnett/rpath-comma' of git://github.com/eschnett/spack into eschnett-eschnett/rpath-comma
2016-03-06 23:50:14 -08:00
Erik Schnetter
265ef337a8
Don't quote -rpath literal
2016-03-06 23:27:30 -05:00
Todd Gamblin
108277fb5d
Fix docs that have gone stale since repos were added.
2016-03-06 19:32:00 -08:00
Todd Gamblin
ada675dea2
Merge branch 'features/sbang' into develop
...
Conflicts:
lib/spack/llnl/util/filesystem.py
2016-03-06 19:30:19 -08:00
Todd Gamblin
1ee90a6fe7
Make spack_cc, spack_cxx, spack_f77, spack_fc available in build env.
...
- Add for convenience for packages that need to refer to these.
- Added an example in the documentation.
2016-03-06 16:57:30 -08:00
Todd Gamblin
240ada5775
Add expand=False
option for URL downloads.
...
- Allows skipping the expand step for downloads.
- Fixed stage so that it knows expansion didn't fail when there is a
no-expand URLFetchStrategy.
- Updated docs to reflect new option, and provided an example.
2016-03-06 16:51:09 -08:00
Todd Gamblin
e515042a36
Fix stage creation bug, simplify do_install code.
2016-03-06 01:41:48 -08:00
Todd Gamblin
ad103dcafa
Small refactor: add keep parameter to stage, get rid of stage.destroy call.
...
- package.py uses context manager more effectively.
- Stage.__init__ has easier to understand method signature now.
- keep can be used to override the default behavior either to keep
the stage ALL the time or to delete the stage ALL the time.
2016-03-05 20:00:30 -08:00
Todd Gamblin
14d48eba46
Revert c5d9ee8924
for bug fixes.
...
- This reverts commit c5d9ee8924
.
- merged too soon before
- reverting and fixing bugs now.
Conflicts:
lib/spack/spack/mirror.py
lib/spack/spack/package.py
2016-03-05 18:40:28 -08:00
Todd Gamblin
097df180e2
Merge pull request #493 from adamjstewart/features/pgi
...
Modifications to get PGI working
2016-03-05 14:19:15 -08:00
Todd Gamblin
bfce2c7508
Fix bug in hook: ensure bin directory exists before listing.
2016-03-05 04:42:52 -08:00
Todd Gamblin
fc6aa7374a
Fix #104 , #54 : issues with overlong shebang in deep directories.
...
This does several things:
- Add `sbang`: a script to run scripts with long shebang lines.
- Documentation for `sbang` is in `bin/sbang`.
- Add an `sbang` hook that filters the `bin` directory after install
and modifies any scripts wtih shebangs that are too long to use
`sbang` instead.
- `sbang` is at the top level, so it should be runnable (not much we
can do if spack itself is too deep for shebang)
- `sbang`, when used as the interpreter, runs the *second* shebang
line it finds in a script.
- shoud fix issues with too long shebang paths.
2016-03-05 04:18:48 -08:00
becker33
6449e8b1b9
Merge pull request #492 from adamjstewart/typos/compiler
...
Typo fix in compiler docstring
2016-03-04 14:25:56 -08:00
Adam J. Stewart
5db9673904
Typo fix in compiler docstring
2016-03-04 10:51:41 -06:00
citibeth
202fbc6812
Rmoved periods. Should help use of cut'n'paste from console windows.
2016-03-03 23:40:29 -05:00
Adam J. Stewart
311d71ec86
Modifications to get PGI working
2016-03-03 16:50:51 -06:00
Todd Gamblin
c5d9ee8924
Revert "refactoring proposal : turn Stage into a context manager"
2016-03-03 14:41:20 -08:00
Luigi Calori
a531a4f5e3
help spack versions paraview to get versions without v
2016-03-03 18:00:50 +01:00
alalazo
db92699c02
test : fixed tests that were broken by import optimization
2016-03-03 11:05:36 +01:00
alalazo
7f4a69319a
Merge branch 'develop' of https://github.com/LLNL/spack into refactoring/stage
...
Conflicts:
lib/spack/spack/package.py
2016-03-03 10:19:45 +01:00
alalazo
5ef3621556
stage : minor syntax fix
2016-03-03 10:10:30 +01:00
Todd Gamblin
6701977f1a
Merge pull request #475 from LLNL/features/env-and-package-provenance
...
Features/env and package provenance
2016-03-03 00:42:40 -08:00
alalazo
353d12d2e6
stage : added create function as decided in #477 comments
2016-03-03 09:18:47 +01:00
alalazo
717bcb8624
test : optimized import statements
2016-03-03 09:17:49 +01:00
Glenn Johnson
6bbadbfaac
Add CPATH pointing to include directories.
2016-03-02 13:18:43 -06:00
Todd Gamblin
9f6ebd7c6e
Merge pull request #465 from citibeth/efischer/160229-RemoteRootBugfix
...
Bug Fix: When Spack create roots around for other versions, it someti…
2016-03-02 10:24:17 -08:00
alalazo
21cd05aad5
package : updated doc
2016-03-02 17:28:21 +01:00
alalazo
ca41909ec5
package : removed do_clean()
2016-03-02 17:19:27 +01:00
alalazo
4d63544fe9
remove_link_tree : moved to llnl.util.filesystem
2016-03-02 16:55:57 +01:00
alalazo
901e4851b9
_cleanup_dead_links : factored method into a function and put it in llnl.filesystem
2016-03-02 16:19:32 +01:00
alalazo
9001b9ed3c
package : minor syntax fixes
...
mirror : extracted add_single_spec from create
2016-03-02 15:56:09 +01:00
alalazo
d649b715ed
stage : updated functions doc
...
_cleanup_dead_links : fixed minor bug
2016-03-02 13:16:04 +01:00
alalazo
65b2a24f7c
stage : removed _setup method
2016-03-02 13:03:40 +01:00
alalazo
726b350689
test : fixed failing unit tests
2016-03-02 12:52:38 +01:00
Todd Gamblin
a0c6519de9
Fixes #476 : create was broken for FTP URLs.
2016-03-02 01:47:54 -08:00
Todd Gamblin
52081c46d6
Fixes #469 : Store package.py files in the .spack directory.
...
- Adds packages in spack repos inside the .spack directory, so that
packages can be rebuilt automatically later.
2016-03-02 00:09:24 -08:00
Todd Gamblin
21d125c914
Fixes #175 : Dump environment provenance as well as build log.
2016-03-02 00:08:36 -08:00
Todd Gamblin
be306d09e9
Move repo creation code into repository.py
2016-03-02 00:04:46 -08:00
Todd Gamblin
c488f7c4d8
Fix bug in install permission setting.
2016-03-01 23:57:34 -08:00
Adam J. Stewart
a9f0b98d4d
Typo fix
2016-03-01 15:53:53 -06:00
Elizabeth F
a339ac0a72
Bug Fix: When Spack create roots around for other versions, it sometimes finds files it thinks are tarballs, but are not. Previously, it would crash if any such files are found. This change allows it to simply skip them and move on, processing the rest of the files it finds correctly.
2016-02-29 23:04:11 -05:00
Ian Lee
67f327f805
Updated links to use new llnl.gov address
2016-02-28 19:47:19 -08:00
becker33
7176e5ef07
Merge pull request #299 from epfl-scitas/enhancement/os_detection
...
enhancement proposal : boolean support for when=<arg>
2016-02-25 13:38:03 -08:00
alalazo
6f42dd556d
stage : on-going refactoring
2016-02-24 17:37:58 +01:00
alalazo
5ce97eeda5
intel : polished code
2016-02-24 09:17:04 +01:00
Massimiliano Culpo
4316f1cd31
Modified wrapper to have a different behavior when modeis vcheck
2016-02-23 16:57:19 +01:00
Todd Gamblin
3c1aa9a4ad
Merge pull request #298 from epfl-scitas/refactoring/resource_directive
...
refactoring proposal : composite for Stage and FetchStrategy
2016-02-18 23:13:12 -08:00
Todd Gamblin
d8a70166d3
Fixes #434
...
Compiler detection was not getting triggered properly with some of the
new config logic. Adjust the conditions under which Spack will serach
for compilers.
2016-02-18 00:56:29 -08:00
Todd Gamblin
c112cf66fe
Merge pull request #443 from trws/dicts-like-string-keys
...
remove the unprotected key name from create.py
2016-02-17 17:06:51 -08:00
Tom Scogland
00125e4688
remove the unprotected key name from create.py
...
Small fix to use dicts correctly.
2016-02-17 16:43:36 -08:00
Erik Schnetter
9868333e8e
Shell quoting is difficult
2016-02-14 11:34:08 -05:00
Erik Schnetter
a06e29fecb
More quoting experiments
2016-02-14 10:43:55 -05:00
Erik Schnetter
43670cbbd0
More games with quoting
2016-02-13 22:01:36 -05:00
Erik Schnetter
52647b9a5d
Using regexes instead of globbing to match path names
2016-02-13 17:55:14 -05:00
Erik Schnetter
69064395eb
Add debug output
2016-02-13 15:12:09 -05:00
Erik Schnetter
9a2c1090a6
Handle -Wl,-rpath,... syntax
2016-02-13 14:54:18 -05:00
Erik Schnetter
dc6a33b716
Handle multiple -Wl,-rpath,... paths
2016-02-13 14:54:18 -05:00
Erik Schnetter
5038a38e29
Correct -Xlinker arguments
2016-02-13 14:54:18 -05:00
Erik Schnetter
2cd9ad8ce6
Use "-Wl,-rpath," instead of "-Wl,-rpath="
...
The former translates to a linker argument "-rpath DIR", whereas the latter translates to "-rpath=DIR". The latter is not support on OS X.
2016-02-13 14:54:18 -05:00
Erik Schnetter
ff81aff254
Remove source-code optimization and cleanup
2016-02-12 13:05:42 -05:00
Erik Schnetter
64436e7752
Merge branch 'develop' into correct-cc
2016-02-12 12:55:26 -05:00
David Beckingsale
90e1b1f0ea
Use hash to make shorter module and dotkit names, fixes #433
2016-02-12 09:33:19 -08:00
Todd Gamblin
bcf705b85e
Merge pull request #432 from RemoteConnectionManager/paraview_fix
...
Paraview fix
2016-02-10 13:59:08 -08:00
Luigi Calori
25e2be3efd
RPATH was collecting all lib from all dependencies, when dep tree is deep like in ParaView the path was growing too much, showing install problems now just direct dependencies rpath is added
2016-02-10 13:28:01 +01:00
Todd Gamblin
f7134990bd
Fix #430 : edit -f fails with UnknownPackageError
...
- Recent external repo refactoring made `repo_for_pkg` raise an error
when the package was not known.
- Correct behavior is to return the highest precedence repo.
2016-02-09 08:57:27 -08:00
Nicolas Richart
824546d343
correcting a bug when url and files are mixed
2016-01-28 14:43:30 +01:00
Nicolas Richart
5850d8530e
Adding the stager to checksum any url that spack can handle
2016-01-28 14:22:28 +01:00
alalazo
0cf03518f3
reverted deletion of the wrong architecture.py
2016-01-28 12:06:30 +01:00
alalazo
603f5e69ee
removed outdated code : os detection (will be handled by platforms) and openssl modifications
2016-01-28 11:30:28 +01:00
alalazo
e76b722e28
Merge branch 'develop' of https://github.com/LLNL/spack into enhancement/os_detection
2016-01-28 11:26:01 +01:00
alalazo
07bb6fef01
resource directive : now works with all the fetch strategies available
2016-01-28 10:58:56 +01:00
alalazo
47035671e8
unit tests : now compliant with 2.6
2016-01-27 17:22:12 +01:00
alalazo
f7f192e12b
Added unit tests for util.pattern
2016-01-27 17:12:24 +01:00