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Author SHA1 Message Date
Adam J. Stewart
5eac8130b3 Quote shell variable values (#12759) 
This updates logic which sets shell variables to quote the values,
which is necessary when the value contains a space (e.g. PATH).
 2019-09-16 11:10:36 -07:00
Adam J. Stewart
14ef0c238e
Add py-pycbc package (#12823) 2019-09-16 13:10:02 -05:00
Adam J. Stewart
269f34c310
Add py-astropy 2.0.14 (#12816) 2019-09-16 13:09:30 -05:00
Adam J. Stewart
98eb8ef0af
Add py-beautifulsoup4 4.8.0 (#12815) 2019-09-16 13:08:36 -05:00
Adam J. Stewart
94291ebd1a
Add py-mpld3 package (#12822) 2019-09-16 13:08:17 -05:00
Adam J. Stewart
a08a7da413
Add py-asdf package (#12817) 2019-09-16 13:07:48 -05:00
Adam J. Stewart
fea315e274
Add py-bintrees package (#12818) 2019-09-16 13:07:21 -05:00
Adam J. Stewart
0885615e22
Add py-lscsoft-glue package (#12821) 2019-09-16 13:06:59 -05:00
Adam J. Stewart
3b11dfdca0
Add py-jplephem package (#12819) 2019-09-16 13:06:33 -05:00
Adam J. Stewart
947413236b
Add py-ligo-segments package (#12820) 2019-09-16 13:06:09 -05:00
Adam J. Stewart
4cce23d1d3
Add py-pyopenssl package (#12824) 2019-09-16 13:05:37 -05:00
Adam J. Stewart
0d64b12c58
Add py-semantic-version package (#12825) 2019-09-16 13:05:12 -05:00
Adam J. Stewart
b8481d7913
Add py-sortedcontainers package (#12826) 2019-09-16 13:04:50 -05:00
Adam J. Stewart
09e3d6514b
Add py-weave package (#12828) 2019-09-16 12:57:18 -05:00
Adam J. Stewart
321c857d4c
Add py-soupsieve package (#12827) 2019-09-16 12:56:53 -05:00
Adam J. Stewart
e3969e33fd
Relax Python version constraints on py-html5lib (#12811) 2019-09-16 12:56:21 -05:00
Chuck Atkins
76b79c125a
xdmf3: new package (#12778) 2019-09-16 12:02:07 -04:00
Ruben Di Battista
9675db4e7f qt: Fix build with GCC9 for version 4 (#12832) 
* qt: Fix build w/ GCC9 for @4:

* qt: Fix patch filename and qt version

* Fix typo in patch name
 2019-09-14 14:00:46 -05:00
Toyohisa Kameyama
c26a3ff894 flang: build on arm. (#12808) 2019-09-14 11:15:06 -05:00
Scott Wittenburg
1050fa5546 Fixes identified in ecp facilities hackathon fixes: 
- improve mirror git repo management
- minio s3 implementation needs endpoint_url
- Remove image key from rebuild-index job
- Remove image, rely on tags instead
 2019-09-13 22:57:15 -07:00
Scott Wittenburg
6d745a56fd Implement an optional compiler bootstrapping phase 2019-09-13 22:57:15 -07:00
Scott Wittenburg
5323a5cff9 Remove CombinatorialSpecSet in favor of environments + stacks 2019-09-13 22:57:15 -07:00
Scott Wittenburg
0b67f30e21 Add pre-ci job generation for a multi-repo setup 2019-09-13 22:57:15 -07:00
Scott Wittenburg
fabbb3d58a Refactor release-jobs cmd based on use of environments (no docker either) 2019-09-13 22:57:15 -07:00
Scott Wittenburg
73c161b7de Add schema for new gitlab-ci and cdash additions to environment 2019-09-13 22:57:15 -07:00
Adam J. Stewart
5f18696169 py-bleach package: add version 3.1.0 (#12814) 2019-09-13 19:15:54 -07:00
Adam J. Stewart
3a47a6196f py-cython package: fix --test (#12813) 
Fix bug in string conversion of "make_jobs"
 2019-09-13 19:15:06 -07:00
Adam J. Stewart
a3c6b07c96 py-emcee package: add version 2.2.1 (#12812) 2019-09-13 19:13:45 -07:00
Adam J. Stewart
f9b8442e1b wcslib package: add version 6.4 (#12810) 2019-09-13 19:09:54 -07:00
Glenn P Johnson
6937416a65 Add diamond dependency 2019-09-13 19:08:57 -07:00
Glenn P Johnson
09047d76e9 Update braker package 
- add version 2.1.4
- change url to github
- add perl dependencies
- new version has a new source layout
- filter shebang to use spack perl
 2019-09-13 19:08:57 -07:00
Glenn P Johnson
b046ee20f5 Fixes for augustus package 
- add missing perl dependency
- only filter Makefile if referred to dependency is in the spec
- rewrite the shebang line of scripts to use spack perl
- remove tabix dependency as tabix and bgzip are part of htslib
 2019-09-13 19:07:35 -07:00
Glenn P Johnson
2256890d4e Update genemark-et package 
- add version 4.46
- add missing perl dependencies
- new version has different source layout
- filter shebang to use spack perl
 2019-09-13 19:05:02 -07:00
Sinan
6df57bb2d0 New package: py-pykwalify (#12540) 2019-09-13 12:22:08 -07:00
Frédéric Simonis
3f06d5c12a preCICE: added versions 1.6.0 and 1.6.1 (#12809) 2019-09-13 16:04:50 +02:00
Glenn Johnson
3cc95c6427 diamond: added version 0.9.25 (#12805) 2019-09-13 07:37:52 +02:00
Sinan
48e9090252 New package: py-ruamel-yaml (#12543) 2019-09-12 15:46:39 -07:00
Owen Solberg
78f3f4c309 Singularity package: add version 3.4.0 (#12785) 
This version in combination with the included patch can install
without root.
 2019-09-12 13:45:00 -07:00
Owen Solberg
6608876747 New package: cryptsetup (#12762) 
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
 2019-09-12 13:41:53 -07:00
Sinan
b95b4bb9e0 add compilation option to sqlite (#12794) 
* add compilation option to sqlite

* rename variant

* fix bug

* re-rename variant
 2019-09-12 15:31:03 -05:00
ktsai7
96ba5a1265 Update legion gasnet config (#12523) 2019-09-12 13:46:37 -06:00
Tyler Reddy
25dbc9fb8e BUG: recursively load modules with tcsh (#12664) 
* for tcsh and csh, spack load -r package
should now correctly load recursively instead
of only loading the target package without any
dependencies
 2019-09-12 11:11:27 -06:00
Simo Tuomisto
5a6d060b52 py-gpaw: Fixed broken fftw linking in newer versions of py-gpaw (#12795) 2019-09-12 09:36:45 -05:00
brietzke
3269f712f0 fgsl: new version + fix for recent spack commit (#12790) 2019-09-11 20:15:50 -05:00
Greg Becker
b1868f35ec
module parsing: make heuristic to get paths from modules more robust (#12693) 
* module parsing: make heuristic to get paths from modules more robust

* refactor module parsing
 2019-09-11 10:51:44 -07:00
Chris Green
e727e79b73 jsoncpp: new versions, support cxxstd variant. (#12780) 2019-09-11 12:32:49 +02:00
Owen Solberg
e3d06dc0d7 create package popt (#12783) 2019-09-10 21:33:33 -05:00
Jonas Lippuner
97641aab63 fix bug in p4est (don't use MPI spec if not compiling with MPI) (#12784) 2019-09-10 19:39:42 -05:00
Hironori-Yamaji
9962696128 openmx: new package (#12768) 
* openmx: new package

* openmx: use copy method
 2019-09-10 12:59:13 -05:00
Janne Blomqvist
3f1762bcc2 cuda: New version 10.1.243 (#12777) 
* cuda: New version 10.1.243

Adds CUDA 10.1.243. The installer command-line arguments have slightly
changed, hence in the install method the version needs to be inspected
in order to give the correct arguments for the new installer.

* cuda: Combine common command-line arguments

The CUDA 10.1+ installer has slightly different command-line arguments
than previous versions.  Keep the common parts together and only split
where they are different.

* Make flake8 happy
 2019-09-10 10:52:55 -07:00