hlrs-software-stack/spack
7
0
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity
12648 commits 3 branches 52 tags 188 MiB
Commit graph

8981 commits

Author SHA1 Message Date
Glenn Johnson
b508eaa806 Added depencies to perl-libwww-perl (#12899) 
The following dependencies are needed for perl-libwww-perl according to
https://metacpan.org:

+    depends_on('perl-encode-locale', type=('build', 'run'))
+    depends_on('perl-file-listing', type=('build', 'run'))
+    depends_on('perl-html-parser', type=('build', 'run'))
+    depends_on('perl-http-cookies', type=('build', 'run'))
+    depends_on('perl-http-daemon', type=('build', 'run'))
+    depends_on('perl-http-date', type=('build', 'run'))
+    depends_on('perl-http-message', type=('build', 'run'))
+    depends_on('perl-http-negotiate', type=('build', 'run'))
+    depends_on('perl-lwp-mediatypes', type=('build', 'run'))
+    depends_on('perl-net-http', type=('build', 'run'))
+    depends_on('perl-try-tiny', type=('build', 'run'))
+    depends_on('perl-uri', type=('build', 'run'))
+    depends_on('perl-www-robotrules', type=('build', 'run'))
 2019-09-24 12:45:02 +02:00
Glenn Johnson
ca11ce06b8 Add missing dependencies to perl-http-daemon (#12898) 
Added the following dependencies:

+    depends_on('perl-http-date', type=('build', 'run'))
+    depends_on('perl-module-build-tiny', type='build')
 2019-09-24 12:44:28 +02:00
Axel Huebl
1d316c4eb3 spdlog: added version 1.4.1 (#12917) 
Add newest release with ability to pre-build as shared or static
library.
 2019-09-24 12:19:19 +02:00
Adam J. Stewart
53db1eafb9
Fix installation permissions on BLIS and libflame libs (#12919) 
* Fix installation permissions on BLIS and libflame libs

* Fix undefined symbols
 2019-09-23 18:54:47 -05:00
Jed Brown
958b81a564 libceed package: add version 0.5 (#12875) 
Also enable vectorization via -O3 for gcc/clang
 2019-09-23 10:38:44 -07:00
Seth R. Johnson
27d4e9a1d1 QT package: only enable fontconfig when freetype is enabled (#12574) 
The 'fontconfig' option is only valid when freetype is enabled.
 2019-09-23 10:04:29 -07:00
Xavier Delaruelle
53ab298e88 environment-modules: add version 4.3.1 (#12893) 2019-09-21 21:32:27 -05:00
Paul
ef652ee42a czmq package: add autoreconf stage (#12846) 2019-09-20 18:14:41 -07:00
Jordan Ogas
d9c22e3f9c charliecloud package: add version 0.11 and test dependency (#12861) 2019-09-20 18:01:40 -07:00
Sinan
326c2718d5 New package: py-gast (#12874) 2019-09-20 17:59:50 -07:00
t-karatsu
e26b23e980 intel-tbb: fix typo. 2019-09-20 17:53:23 -07:00
Sinan
af8f245f48 py-protobuf package: fix import error for Python 2.x (#12873) 2019-09-20 17:52:11 -07:00
Massimiliano Culpo
7daf860991 targets: adjust packages to use new specific targets semantics 
Seamless translation from 'target=<generic>' to either
- target.family == <generic> (in methods)
- 'target=<generic>:' (in directives)

Also updated docs to show ranges in directives.
 2019-09-20 00:51:37 -07:00
Valentin Clement (バレンタイン クレメン)
83bea039cf CLAW Compiler: added version 2.0.1 (#12878) 2019-09-19 18:27:22 +02:00
Adam J. Stewart
cbbd384628
blis: fix darwin install name (#12869) 2019-09-18 22:46:34 -05:00
Adam J. Stewart
a4e585bad5
googletest: fix darwin install name (#12871) 2019-09-18 22:46:16 -05:00
Adam J. Stewart
964500399b
libkml: fix darwin install name (#12872) 2019-09-18 22:44:57 -05:00
Adam J. Stewart
b33d005267
wcslib: fix darwin install name (#12868) 2019-09-18 22:44:38 -05:00
Adam J. Stewart
1fe94748d2
diffutils: add missing libiconv dependency (#12866) 2019-09-18 15:36:41 -05:00
Julien Loiseau
cacbb4ff7a Correcting branch used for FleCSPH (#12865) 2019-09-18 14:00:47 -06:00
Adam J. Stewart
ec11574a02
Add SQLite 3.29.0 (#12862) 2019-09-18 14:36:41 -05:00
Adam J. Stewart
6d7e543cef
GDAL: Add support for MKL driver (#12837) 2019-09-18 13:47:31 -05:00
Adam J. Stewart
680430df0f
Add libkml package (#12836) 
* Add libkml package

* googletest needs to be linked to RPATH
 2019-09-18 13:46:45 -05:00
Adam J. Stewart
9a7b5ac7cb
libunistring: add missing dependency on libiconv (#12863) 2019-09-18 13:37:19 -05:00
Adam J. Stewart
9d67ac2407
Add minizip package (#12835) 2019-09-18 12:53:01 -05:00
Adam J. Stewart
3eb0bcf4a1
Add uriparser package (#12834) 
* Add uriparser package

* googletest needs to be linked to RPATH
 2019-09-18 12:52:40 -05:00
Patrick Gartung
7c0c31361a
Update buildcache creation and installation to allow mach-o binary relocation using py-machotools on linux or macos. (#12858) 
Update py-machotools dependencies and versions.
 2019-09-18 07:24:45 -05:00
Sinan
9807bb5d03 add a version (#12856) 2019-09-17 22:54:18 -05:00
Greg Becker
eb4dd4a51a Boost: add libs property (#12849) 2019-09-17 20:30:29 -05:00
Sinan
02ae944c74 fix typo in version number (#12855) 2019-09-17 20:28:57 -05:00
Christoph Junghans
b11a98abf0
cmake: add v3.15.{2,3} (#12847) 2019-09-17 13:13:39 -06:00
George Hartzell
ae37896800 cryptsetup package: dont vendor libuuid in util-linux (#12839) 
Fixes #12829

This adds a variant to the util-linux package that controls whether it
builds its own libuuid.  Variant defaults to True.  It enables other
packages to choose to get libuuid from the libuuid package instead.

This also changes the cryptsetup package to build util-linux with
~libuuid (so it uses an explicitly-Spack-built instance of libuuid
instead).
 2019-09-17 11:22:10 -07:00
Adam J. Stewart
14ef0c238e
Add py-pycbc package (#12823) 2019-09-16 13:10:02 -05:00
Adam J. Stewart
269f34c310
Add py-astropy 2.0.14 (#12816) 2019-09-16 13:09:30 -05:00
Adam J. Stewart
98eb8ef0af
Add py-beautifulsoup4 4.8.0 (#12815) 2019-09-16 13:08:36 -05:00
Adam J. Stewart
94291ebd1a
Add py-mpld3 package (#12822) 2019-09-16 13:08:17 -05:00
Adam J. Stewart
a08a7da413
Add py-asdf package (#12817) 2019-09-16 13:07:48 -05:00
Adam J. Stewart
fea315e274
Add py-bintrees package (#12818) 2019-09-16 13:07:21 -05:00
Adam J. Stewart
0885615e22
Add py-lscsoft-glue package (#12821) 2019-09-16 13:06:59 -05:00
Adam J. Stewart
3b11dfdca0
Add py-jplephem package (#12819) 2019-09-16 13:06:33 -05:00
Adam J. Stewart
947413236b
Add py-ligo-segments package (#12820) 2019-09-16 13:06:09 -05:00
Adam J. Stewart
4cce23d1d3
Add py-pyopenssl package (#12824) 2019-09-16 13:05:37 -05:00
Adam J. Stewart
0d64b12c58
Add py-semantic-version package (#12825) 2019-09-16 13:05:12 -05:00
Adam J. Stewart
b8481d7913
Add py-sortedcontainers package (#12826) 2019-09-16 13:04:50 -05:00
Adam J. Stewart
09e3d6514b
Add py-weave package (#12828) 2019-09-16 12:57:18 -05:00
Adam J. Stewart
321c857d4c
Add py-soupsieve package (#12827) 2019-09-16 12:56:53 -05:00
Adam J. Stewart
e3969e33fd
Relax Python version constraints on py-html5lib (#12811) 2019-09-16 12:56:21 -05:00
Chuck Atkins
76b79c125a
xdmf3: new package (#12778) 2019-09-16 12:02:07 -04:00
Ruben Di Battista
9675db4e7f qt: Fix build with GCC9 for version 4 (#12832) 
* qt: Fix build w/ GCC9 for @4:

* qt: Fix patch filename and qt version

* Fix typo in patch name
 2019-09-14 14:00:46 -05:00
Toyohisa Kameyama
c26a3ff894 flang: build on arm. (#12808) 2019-09-14 11:15:06 -05:00
Adam J. Stewart
5f18696169 py-bleach package: add version 3.1.0 (#12814) 2019-09-13 19:15:54 -07:00
Adam J. Stewart
3a47a6196f py-cython package: fix --test (#12813) 
Fix bug in string conversion of "make_jobs"
 2019-09-13 19:15:06 -07:00
Adam J. Stewart
a3c6b07c96 py-emcee package: add version 2.2.1 (#12812) 2019-09-13 19:13:45 -07:00
Adam J. Stewart
f9b8442e1b wcslib package: add version 6.4 (#12810) 2019-09-13 19:09:54 -07:00
Glenn P Johnson
6937416a65 Add diamond dependency 2019-09-13 19:08:57 -07:00
Glenn P Johnson
09047d76e9 Update braker package 
- add version 2.1.4
- change url to github
- add perl dependencies
- new version has a new source layout
- filter shebang to use spack perl
 2019-09-13 19:08:57 -07:00
Glenn P Johnson
b046ee20f5 Fixes for augustus package 
- add missing perl dependency
- only filter Makefile if referred to dependency is in the spec
- rewrite the shebang line of scripts to use spack perl
- remove tabix dependency as tabix and bgzip are part of htslib
 2019-09-13 19:07:35 -07:00
Glenn P Johnson
2256890d4e Update genemark-et package 
- add version 4.46
- add missing perl dependencies
- new version has different source layout
- filter shebang to use spack perl
 2019-09-13 19:05:02 -07:00
Sinan
6df57bb2d0 New package: py-pykwalify (#12540) 2019-09-13 12:22:08 -07:00
Frédéric Simonis
3f06d5c12a preCICE: added versions 1.6.0 and 1.6.1 (#12809) 2019-09-13 16:04:50 +02:00
Glenn Johnson
3cc95c6427 diamond: added version 0.9.25 (#12805) 2019-09-13 07:37:52 +02:00
Sinan
48e9090252 New package: py-ruamel-yaml (#12543) 2019-09-12 15:46:39 -07:00
Owen Solberg
78f3f4c309 Singularity package: add version 3.4.0 (#12785) 
This version in combination with the included patch can install
without root.
 2019-09-12 13:45:00 -07:00
Owen Solberg
6608876747 New package: cryptsetup (#12762) 
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
 2019-09-12 13:41:53 -07:00
Sinan
b95b4bb9e0 add compilation option to sqlite (#12794) 
* add compilation option to sqlite

* rename variant

* fix bug

* re-rename variant
 2019-09-12 15:31:03 -05:00
ktsai7
96ba5a1265 Update legion gasnet config (#12523) 2019-09-12 13:46:37 -06:00
Simo Tuomisto
5a6d060b52 py-gpaw: Fixed broken fftw linking in newer versions of py-gpaw (#12795) 2019-09-12 09:36:45 -05:00
brietzke
3269f712f0 fgsl: new version + fix for recent spack commit (#12790) 2019-09-11 20:15:50 -05:00
Chris Green
e727e79b73 jsoncpp: new versions, support cxxstd variant. (#12780) 2019-09-11 12:32:49 +02:00
Owen Solberg
e3d06dc0d7 create package popt (#12783) 2019-09-10 21:33:33 -05:00
Jonas Lippuner
97641aab63 fix bug in p4est (don't use MPI spec if not compiling with MPI) (#12784) 2019-09-10 19:39:42 -05:00
Hironori-Yamaji
9962696128 openmx: new package (#12768) 
* openmx: new package

* openmx: use copy method
 2019-09-10 12:59:13 -05:00
Janne Blomqvist
3f1762bcc2 cuda: New version 10.1.243 (#12777) 
* cuda: New version 10.1.243

Adds CUDA 10.1.243. The installer command-line arguments have slightly
changed, hence in the install method the version needs to be inspected
in order to give the correct arguments for the new installer.

* cuda: Combine common command-line arguments

The CUDA 10.1+ installer has slightly different command-line arguments
than previous versions.  Keep the common parts together and only split
where they are different.

* Make flake8 happy
 2019-09-10 10:52:55 -07:00
Owen Solberg
c23bea80bd py-atropos: new package (#12745) 
* create new package py-atropos

* remove whitespace

* make tqdm and pysam dependencies optional, exposed as variants
 2019-09-10 12:18:31 -05:00
Hironori-Yamaji
fefd998509 ccs-qcd: disable parallel builds (#12775) 2019-09-10 14:19:09 +02:00
xfzhao
c30f9c6833 update bbmap (#12721) 
* update bbmap

* remove one extra comment line
 2019-09-09 12:55:06 -05:00
Michael Kuhn
62f0286f5e Fix pkgconfig dependencies (#12714) 
pkgconfig is the virtual dependency, pkg-config is an implementation.
 2019-09-09 12:54:46 -05:00
brietzke
4de32033b1 Update py-bokeh: new version & dependencies" (#12724) 
* update py-bokeh: new version & dependencies

* Revert "update py-bokeh: new version & dependencies"

This reverts commit 5e191a0b20a89f09630b4d223a28b19db715603f.

* update py-bokeh: new version & dependencies

* trigger travis-ci

* adjust python dependency-type to br
 2019-09-09 11:59:27 -05:00
brietzke
155a667b7a New package: py-fsspec (#12725) 
* update py-bokeh: new version & dependencies

* Revert "update py-bokeh: new version & dependencies"

This reverts commit 5e191a0b20a89f09630b4d223a28b19db715603f.

* new package: py-fsspec: add package.py

* trigger travis-ci

* adjust python dependency-type to br
 2019-09-09 11:58:49 -05:00
Dan Lipsa
1a8c572316 Paraview version (#12766) 
* Update paraview

* Paraview 5.6.2 provides only .xz (no .gz)

* Add list_url and list_depth
 2019-09-09 11:57:53 -05:00
viniciusvgp
7849dbb529 binutils: fix undefined symbol libintl_dgettext (#12770) 2019-09-09 11:05:04 -05:00
Greg Sjaardema
db1fb16840 CGNS: Add setting of RPATH on Darwin (#9984) 
* CGNS: Add setting of RPATH on Darwin

This should go in the CGNS CMakeLists.txt, but it isn't there yet and won't be in previous versions, so best to handle it here.  
If building on darwin/MacOSX, need to set the RPATH so applications can find shared library correctly.

* Restrict MACOSX_RPATH setting

This has now been added to the CGNS distribution, so the setting of `CMAKE_MACOSX_RPATH` should be restricted to current and previous releases and not upcoming releases.
 2019-09-08 17:14:56 -05:00
Geoffrey Oxberry
983e6b4a4a fribidi@1.0.5: new package (#12386) 2019-09-08 17:10:39 -05:00
Sinan
4a18d40a66 new package: py-iniparse (#12638) 
* new package: py-iniparse

* add git version supporting python3

* redo python dependency
 2019-09-08 17:09:24 -05:00
Sinan
d66caf7a66 Package/py configobj (#12639) 
* new package: py-configojb

* add version 4.7.2

* improve dependencies

* fix url for versions > 5.0.0

* Update var/spack/repos/builtin/packages/py-configobj/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-configobj/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* use format to create url strings

* fix typo

* improve style

* Update var/spack/repos/builtin/packages/py-configobj/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
 2019-09-08 17:08:59 -05:00
Owen Solberg
2ad6bed77c for fakeroot support, add "shadow" dependency (#12754) 
* adding checksum for singularity 3.4, adding dep for shadow

* make v3.4 a TODO for now -- needs cryptsetup package first
 2019-09-08 13:55:15 -05:00
Adam J. Stewart
bff667051b
Fix PyQt installation (#12479) 
* Fix PyQt installation

* Switch dependency type

* Replace SIP dependency with resource

* Relax py-pyqt4 Qt dependency
 2019-09-08 10:48:50 -05:00
Simo Tuomisto
5a21c781f3 py-gpaw: Fixing missing numpy include path, adding newer version of p… (#12737) 
* py-gpaw: Fixing missing numpy include path, adding newer version of py-gpaw and fixing a bug with libxc.c in older py-gpaw

* py-gpaw: Fix Python and ASE version dependencies

- GPAW 19.8.1 requires Python 3.x, add dependency on python@3.5:

- GPAW releases are associated with a corresponding ASE release, add
  matching ASE version dependencies.

* py-gpaw: Enable the scalapack variant by default

GPAW installation instructions say scalapack is optional but "highly
recommended". Thus enable it by default.
 2019-09-08 10:46:47 -05:00
Owen Solberg
8fd8b54e97 py-cutadapt: Updated version checksum (#12741) 
* add new cutadapt release 2.5, and adjust dependencies conditional on version

* use https, not ssh, for git url

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
 2019-09-08 10:46:08 -05:00
Owen Solberg
fe26678299 new package: py-bz2file (#12761) 
* update py-xopen (add 0.8.2 checksum)

* refine version specific dependencies

add py-bz2file, which needs to be created

* create py-bz2file

* Revert "refine version specific dependencies"

This reverts commit 70649da98851fefb2f936ca99a012fe6bef07b70.

* Revert "update py-xopen (add 0.8.2 checksum)"

This reverts commit 7400f44caa6e98419eb4bc3107704b91e8a2018b.
 2019-09-08 10:38:37 -05:00
Owen Solberg
b83fa3909e py-xopen: update release 0.8.2 checksum (#12742) 
* update py-xopen (add 0.8.2 checksum)

* refine version specific dependencies

add py-bz2file, which needs to be created

* py-bz2file needed when built with python 2.7

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* space after comma
 2019-09-08 10:38:19 -05:00
Owen Solberg
4468ee2437 py-dnaio: new package need by py-cutadapt (#12743) 
* add new package py-dnaio

* provide git url with https, not ssh, protocol

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
 2019-09-08 10:37:49 -05:00
Todd Gamblin
a2220f3150 flake8: make entire repository pass spack flake8 -a 
- Fix trailing whitespace missed by the bug described in #12755.

- Fix other style issues that have crept in over time (this can happen
  when flake8 adds new checks with new versions)
 2019-09-07 23:59:10 -07:00
Owen Solberg
48c3c833e8 patch boost version 1.54-1.55 when being built with ANY gcc version after 5.0 (#12718) 2019-09-07 22:45:53 -05:00
Kevin Huck
35221c127e Updating TAU package. Fixing compiler specification for OSX (#12720) 
and making Fortran an option that can be disabled.  Also added
support for the POSIX I/O wrapper and OMPT for OpenMP.
 2019-09-07 22:44:40 -05:00
Howard Pritchard
1a38285be9 mesa: disable use of libunwind for arm arch (#12735) 
There are problems with libunwind for arm and trying to use it with mesa.
See for example:

https://github.com/grate-driver/mesa/issues/6

disabling use of libunwind for arm, allows the package to be built

Signed-off-by: Howard Pritchard <hppritcha@gmail.com>
 2019-09-07 22:33:30 -05:00
Jonas Lippuner
c3a2528022 add mpi variant to p4est package to allow turning off MPI (#12739) 2019-09-07 22:29:53 -05:00
Axel Huebl
331e4e32be ncurses: improve build time (#12621) 
Apply configure options to skip manpage generation
and test builds for both wide and non-wide builts.
 2019-09-07 22:27:07 -05:00
Ruben Di Battista
ac7a17754f luarocks: Use make command instead of install (#12703) 
This way luarocks does not attempt to pull stuff from the internet.

Fix #3909
 2019-09-07 21:06:52 -05:00
Adam J. Stewart
faa3d6a2a5
Add py-numpy 1.17.2 (#12753) 2019-09-07 20:44:46 -05:00
Piotr Luszczek
bbdb033e5f Add patches to work around CMake versions (#12744) 
- Use of symbol testing macro requires explicit include()
- CMake policies are not version-portable and the support has to queried
  based on CMake version
 2019-09-07 19:04:20 -05:00
Owen Solberg
c4da66be4c font-util 1.3.2 (#12728) 2019-09-07 18:57:22 -05:00
Sinan
754ce972a3 new package: py-pygdal (#12747) 2019-09-07 18:23:38 -05:00
Vanessasaurus
25bbc27716 adding shadow-uidmap (#12750) 
Signed-off-by: Vanessa Sochat <vsochat@stanford.edu>
 2019-09-07 17:36:45 -05:00
Mathias Jacquelin
696e12da98 upcxx: new package 
Adding a UPC++ spack package pointing to the default 2019.3.2 UPC++
version, and allowing to build UPC++ with the experimental CUDA variant.
 2019-09-06 16:04:33 -07:00
Toyohisa Kameyama
5def1dd39d openspeedshop: fixed build on arm. (#11861) 
* openspeedshop: fixed build on arm.

* remove patch comment.
 2019-09-06 13:26:24 -07:00
Geoffrey Oxberry
8fe5405e1b libpeas@1.22.0: new package (#12385) 
* libpeas@1.22.0: new package

* libpeas: note more build dependencies

Build and link dependencies were obtained through a combination of
examining the `config.log` file from `configure` and looking at the
pkg-config files of `libpeas`.

* libpeas: add search path for GIR/typelib files
 2019-09-06 12:53:12 -05:00
Geoffrey Oxberry
071fb3dd6a iso-codes: new package (#12389) 2019-09-06 12:48:08 -05:00
Toyohisa Kameyama
34647913be fftw: change default value of simd variant for other than x86_64 (#11627) 
* Use spec.architecture.target insted of platform.

* remove default in simd variant value.
simd variant change to archtecture independent values.

* Add check simd values.

* rewrite check simd values.

* * flake8
* change aarch64 to arm (neon support only 32 bit arm.)
 2019-09-05 11:42:04 -07:00
Matthieu Dorier
1dbf3c208b FIX Catalyst: corrected catalyst package for aarch64 targets (#12707) 
* corrected catalyst package for aarch64 targets

* corrected syntax

* corrected undefined variable
 2019-09-05 12:44:38 -05:00
Ruben Di Battista
6ef95481ef Add pixz package (#12698) 2019-09-05 09:40:29 -05:00
Jennifer Herting
ca8db06e37 [jemalloc] added version 5.2.1 (#12706) 2019-09-05 09:39:42 -05:00
Hironori-Yamaji
ed6a2f0ef9 textparser: new package (#12713) 
* textparser: new package

* textparser: use 'parallel = False'
 2019-09-05 09:37:21 -05:00
Michael Kuhn
ad93f47c8f mariadb: Add missing dependencies (#12715) 
Found while building mariadb in a minimal build environment.
 2019-09-05 09:34:44 -05:00
Janne Blomqvist
30756a643b py-ase: New version 3.18 (#12697) 
* py-ase: New version 3.18

Add ASE version 3.18. ASE 3.18 has dropped support for python 2.x,
hence add a dependency on python@3.5: for it.

* Add more ASE dependencies

Address review comments, add dependencies on py-scipy, py-matplotlib,
py-flask, and also add type=('build', 'run') dependency specifiers.
 2019-09-05 09:09:37 -05:00
Toyohisa Kameyama
e50dbe6f76 cctools: fixed to build on ARM. (#11862) 2019-09-04 16:45:41 -07:00
Paul Bryant
cb2d18c1e6 Add Go 1.13 2019-09-04 15:04:51 -07:00
t-karatsu
e08f527004 openblas: Add route to f_check for Fujitsu compiler. (#11804) 2019-09-04 15:01:58 -07:00
asmaahassan90
00b02fd234 Add gams recipe (#12700) 
* Add gams recipe

* Break down lines to pass lint
 2019-09-04 10:13:58 -05:00
t-karatsu
fc9e17289a boost: add -c option to C/C++ compile commands for clang. (#12694) 2019-09-04 10:07:31 -05:00
Mario Melara
407834fffa cppflags point to ncurses headers (#12691) 
While debugging this package on our Cray machine, tmux was throwing an
error involving the ncurses headers. Tmux would look for headers in
system locations rather than where spack installed ncurses. Tested only
on a Cray.
 2019-09-04 10:06:35 -05:00
asmaahassan90
5953336c3e Add tecplot recipe (#12688) 
* Add tecplot recipe

* break down description to pass lint

* fix format to match python 2.6 requiremnets

* importing os
 2019-09-04 09:25:43 -05:00
Matthieu Dorier
3181021c11 Boost: fixed problem when requesting ~signals for boost >= 1.69 (#12627) 
* fixed problem when requesting ~signals for boost >= 1.69

* added checks for all libs in with_libs
 2019-09-04 09:25:00 -05:00
Sinan
d7ef97392c new package: liblas (#12619) 
* new package: liblas

* explicitly disable build options

* fix indentation
 2019-09-04 09:20:38 -05:00
Peter Scheibel
868f7869e0
py-chardet package: add py-pytest-runner dependency (#12692) 
This required dependency was missing
 2019-09-03 14:56:53 -07:00
Sinan
c14b7379f9 new package: protobuf-c (#12634) 
* new package: protobuf-c

* Update var/spack/repos/builtin/packages/protobuf-c/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
 2019-09-03 16:16:50 -05:00
t-karatsu
ae41ef9146 Boost/Change the method for analysis version (#12676) 
* boost:Change the method for analysis version when using Fujitsu compiler.

* Change version to apply patch for Fujitsu.

* fix typo
 2019-09-03 09:27:48 -05:00
Hironori-Yamaji
9e1800d81c pmlib: new package (#12625) 
* pmlib: new package

* pmlib: fix options and add patch

* pmlib: fix the patch file
 2019-09-03 09:26:47 -05:00
Hironori-Yamaji
6ea27cabd6 ccs-qcd: new package (#12681) 
* ccs-qcd: new package

* ccs-qcd: fix variant and replacement string
 2019-09-03 09:15:34 -05:00
Todd Gamblin
da7fed86a8 tests: add tests for spack extensions command 
- add tests for `spack extensions`
- refactor `test_activations` test to use real extensions.
 2019-09-02 19:24:48 -07:00
Michael Kuhn
9b8f1fdc40 esmf: Fix build with gcc@8: (#12678) 2019-09-02 10:02:17 -05:00
asmaahassan90
6a791db72d Add XSSP recipe (#12679) 2019-09-02 10:00:57 -05:00
Michael Kuhn
d7a92adb93 icu4c: Add missing python dependency (#12683) 2019-09-02 09:52:51 -05:00
asmaahassan90
c184e79b91 Add fpocket (#12675) 
* Add fpocket

* fix recipe

break down the description to pass lint

* update license

* make changes as per maintainer's review
 2019-09-02 09:51:53 -05:00
asmaahassan90
4e487bf308 Install the newest version of ncbi-rmblastn (#12580) 
* Install the newest version of ncbi-rmblastn

Version ncbi-rmblastn 2.2.28 coonfiguration fails for gcc compiler on ubuntu 16.04 due to some compatibility issues that requires manual intervention to keep the installation going. However you still stumble upon other issues while compiling it.
Using Intel compiler passes the configuration step but fails for the compilation process as well.

Here I'm using the latest version and patch, and the recommended configuration option as mention in http://www.repeatmasker.org/RMBlast.html

* uploading ncbi-blast patch
 2019-09-01 11:11:15 -05:00
Kevin Manalo
421310a037 IDBA: package does not need conflicts with other compilers (#12674) 2019-09-01 11:08:05 -05:00
asmaahassan90
d3b89083f3 Add Vesta recipe (#12581) 
* Add Vesta recipe

* Break down description to pass lint

* Make changes as maintainers' review

* remove whitespaces
 2019-09-01 10:41:57 -05:00
健美猞猁
8c9e14486b A new package: fastp. (#12671) 
* A new package: fastp.

* Flake8.

* Flake8.
 2019-09-01 00:01:35 -05:00
Sinan
bb28028608 new package: py-requests-oauthlib (#12548) 
* new package: py-requests-oauthlib

* add a version

* fix typo
 2019-08-31 15:13:04 -05:00
Sinan
6723032440 new package: py-systemd-python (#12595) 2019-08-31 14:57:03 -05:00
Glenn Johnson
1a8ece4504 Add MKL variant to Julia (#12602) 
This PR provides an option to build Julia with Intel MKL.
 2019-08-31 14:48:40 -05:00
Sinan
6ec5cf4bf0 new package: optipng (#12608) 2019-08-31 14:41:06 -05:00
Sinan
ed59a94d04 new package: pngquant (#12609) 2019-08-31 14:40:26 -05:00
Sinan
da48112812 new package: pktools (#12611) 
* new package: pktools

* rename and enable utilities

* enable build with FANN

* add variants, dependencies

* expcitly turn off options when not in use
 2019-08-31 14:39:51 -05:00
Sinan
1461c90bd1 new package: FANN (#12614) 2019-08-31 14:38:46 -05:00
Cameron Smith
9ce9d45aa7 Add int64 variant to pumi and zoltan (#12630) 
* pumi and zoltan: add int64 variant

* typo
 2019-08-31 14:28:56 -05:00
Sinan
7a60be5154 add variant for building RTREE module (#12668) 2019-08-31 14:12:20 -05:00
Sinan
392e790884 new package: libwebp (#12669) 2019-08-31 14:10:30 -05:00
Glenn Johnson
ed6c9e8ed8 Add conflicts statement to mariadb (#12670) 
The mariadb-5.5 series can not be compiled with gcc-9.1.0 and above. Add
a conflicts statement to reflect that.

The error is due to -Werror=address-of-packed-member, a warning that is
new in gcc-9.
 2019-08-31 14:09:51 -05:00
健美猞猁
4a5d740eaf A new package: py-gdc-client. (#12672) 
* A new package: py-gdc-client.

* Flake8.
 2019-08-31 14:08:05 -05:00