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11254 commits

Author SHA1 Message Date
Toyohisa Kameyama
66b896d286
conda4aarch64:New Package. (#16617) 2020-05-13 12:49:42 -05:00
Michael Kuhn
a9ee4da670
ncl: Fix build with gcc@10: (#16624) 2020-05-13 12:45:12 -05:00
Amjad Kotobi
9b8082ecf3
r-exactextractr: new package (#16626) 2020-05-13 12:42:16 -05:00
Nichols A. Romero
fa57f1da29
QE Update May 2020 (#16627) 
* Clarify comments about QMCPACK-to-QE converter.

* Allow hdf5=serial with QE 6.4.1 + qmcpack, but apply filter_file.

* Ammend comments about the use of the filter_file.
 2020-05-13 12:41:16 -05:00
lpritch-lanl
043d507540
py-pint: added versions up to v0.11 (#16537) 
Co-authored-by: Lori Pritchett-Sheats <lpritch@pn2002926.lanl.gov>
 2020-05-13 16:47:01 +02:00
Michael Kuhn
308f016f31
parallel-netcdf: fix build with gcc@10: (#16620) 2020-05-13 16:44:50 +02:00
Amjad Kotobi
f6fbf8b8d3
r-xml2: new version & updated dependencies (#16604) 
* r-xml2: new version & updated dependencies

* r-xml2: updated dependencies
 2020-05-13 09:22:53 -05:00
Tomoki, Karatsu
a740c361cd
ppopen-appl-fdm: added support to Fujitsu compilers. (#16616) 2020-05-13 15:10:07 +02:00
Toyohisa Kameyama
4777284f08
charmpp: support for aarch64. (#16619) 2020-05-13 15:06:25 +02:00
Michael Kuhn
b4052eb3b8
tcsh: fix build with gcc@10: (#16621) 2020-05-13 14:57:12 +02:00
Michael Kuhn
aaf3388cfe
esmf: fix build with gcc@10: (#16622) 2020-05-13 14:53:49 +02:00
Chris White
fdf38ec991
Fix axom install target (#16613) 2020-05-12 16:57:25 -07:00
Pariksheet Nanda
f43b7824ca
py-plotly: unfix dependency versions (fixes #16544) (#16546) 
* py-plotly: unfix dependency versions (fixes #16544)

* py-plotly: add missing dependencies for #16546

* py-plotly: match setup.py instead of requirements.txt for #16546
 2020-05-12 17:06:18 -05:00
Justin S
0f2a581276
velvetoptimiser: new package at 2.2.6 (#16611) 2020-05-12 17:05:19 -05:00
Amjad Kotobi
ab92407940
r-testthat : dependencies and version updated (#16576) 
* r-testthat : dependencies and version updated

* Adding version conditions for dependencies

* r-testthat: Fix dependecies condition
 2020-05-12 17:05:01 -05:00
Adam J. Stewart
b4e587bd0b
py-scikit-learn: add new version (#16607) 2020-05-12 16:43:56 -05:00
Justin S
1d76067d7a
zstd: add 1.4.4 (#16608) 2020-05-12 16:43:43 -05:00
Adam J. Stewart
6b41fb88a9
py-threadpoolctl: add new package (#16606) 2020-05-12 14:33:10 -05:00
Nick Booher
9bdf4564db
revbayes: update for 1.1.0 (#16603) 
* revbayes: update for 1.1.0

* revbayes: Fix flake8
 2020-05-12 14:26:44 -05:00
Amjad Kotobi
154c0f5771
new version r-rcurl (#16550) 
* new version r-rcurl

* RCurl dependency R version updated

* Adding version conditions
 2020-05-12 11:42:58 -05:00
Amjad Kotobi
78d8dd0815
new version r-cli (#16553) 
* new version r-cli

* r-cli : dependencies updated

* Adding version conditions for dependencies
 2020-05-12 11:42:20 -05:00
Amjad Kotobi
bfa707dfc4
new version r-ellipsis (#16556) 
* new version r-ellipsis

* r-ellipsis : R dependency updated

* Adding version conditions for dependencies
 2020-05-12 11:41:41 -05:00
Amjad Kotobi
d4c8c8b80d
r-rematch2 : new package (#16563) 
* r-rematch2 : new package

* Updating URL
 2020-05-12 11:41:20 -05:00
Amjad Kotobi
b99a5369ce
r-roxygen : dependencies and version updated (#16565) 
* r-roxygen : dependencies and version updated

* Dependencies updated for condition
 2020-05-12 11:40:55 -05:00
Amjad Kotobi
7528e1eb45
r-purrr : dependencies and version update (#16566) 
* r-purrr : dependencies and version update

* Dependencies updated for condition
 2020-05-12 11:39:39 -05:00
Amjad Kotobi
173823e77d
r-rversions : new package (#16572) 
* r-rversions : new package

* URL updated r-rversions
 2020-05-12 11:39:08 -05:00
Amjad Kotobi
14b80ecaf2
r-withr : dependencies and version updated (#16577) 
* r-withr : dependencies and version updated

* Adding version conditions for dependencies
 2020-05-12 11:36:25 -05:00
Amjad Kotobi
7c327ed447
r-knitr : dependencies and version updated (#16579) 
* r-knitr : dependencies and version updated

* Adding version conditions for dependencies
 2020-05-12 11:35:41 -05:00
Tomoki, Karatsu
278f8eb7fe
modylas: Add flag to use preprocessor when building with Fujitsu compiler. (#16598) 2020-05-12 11:34:28 -05:00
Jose E. Roman
8b06bd7198
New patch release SLEPc 3.13.2 (#16601) 2020-05-12 11:33:46 -05:00
Andrew W Elble
e36aa96392
py-horovod: link dependency for py-torch (#16600) 
fix for same reasons as #16495.
 2020-05-12 11:24:30 -05:00
Toyohisa Kameyama
7813e41464
caffe: fixed build error (#16520) 
* opencv 3.2 requires cmake 3.11 or older.
caffe dependency is changed.

* revert opencv variant to caffe.
backport to opencv errors.
 2020-05-12 09:39:19 -05:00
Sergey Kosukhin
d1a5dc792e
py-dask: new version (#16531) 
* py-dask: new version

* py-dask: update the constraints.

* py-dask: add a list of maintainers.
 2020-05-12 09:35:11 -05:00
Michael Kuhn
15112f9dba
gcc: fix several issues (#16599) 
- GCC has moved to Git
- The develop/master version requires flex
- Add myself as a maintainer
- Set the library path in the zstd patch
 2020-05-12 13:56:58 +02:00
Todd Gamblin
a44f487a1d
z3: update python dependency (#16597) 
-[x] `z3` needs a dependency on `py-setuptools`
-[x] `z3` has a run dependency on `python`, so we might as well make
     building with the python bindings default
 2020-05-12 11:15:42 +02:00
Justin S
80e7a61597
prokka: new package at v1.14.6 (#16282) 2020-05-12 10:09:01 +02:00
Todd Gamblin
269bcfe1c8
clingo: update package (#16594) 
`clingo` has some undocumented dependencies:
- `bison`, for which the default macos version is too old
- `re2c`, which isn't always available

Also, the python installation was not set up properly. Clingo by default
does an install in `~/.local`, so we need to disable that and add a few
other options to get things right.

- [x] add `bison` dependency
- [x] add `re2c` dependency
- [x] make `doxygen` dependency optional (and patch if needed)
- [x] add options to fix `python` build
- [x] make python build optional but on by default
 2020-05-12 09:41:31 +02:00
Tomoki, Karatsu
a59b92d303
xabclib: added support for Fujitsu compiler. (#16596) 
- Added Fujitsu compiler options that have the same functions as the options added for GCC
- Added option to link C objects
 2020-05-12 09:40:11 +02:00
Sajid Ali
b526a90220
Charm++: fix build prefix; add ucx/pmi support (#15666) 
* Add pmi support (required by ucx, ofi, and gni backends)
* Add support for ucx backend
* Add dependency on MPI for pmi=simplepmi, slurmpmi, or slurmpmi2
* Remove charmpp as an MPI provider since the changes in this PR can
  add MPI as a dependency (mentioned previously)
* Install into transport_protocol-OS-arch subdirectory to match
  default charmpp installation behavior (which helps dependents find it)
 2020-05-11 16:27:38 -07:00
Greg Becker
fa702b8311
python: add -fwrapv to cflags for python@3.8.0: %intel (#16592) 2020-05-11 18:02:56 -05:00
Michael Kuhn
35c3478fcd
fio: Add 3.19 (#16571) 
Earlier versions are not compatible with gcc@10:.
 2020-05-11 16:54:28 -05:00
Michael Kuhn
97779e3539
adios: Fix build with gcc@10: (#16569) 2020-05-11 16:54:08 -05:00
asmaahassan90
1367b63e99
Add avizo version 2020.1 (#16567) 2020-05-11 12:56:50 -05:00
Adam J. Stewart
98fd62254f
py-plac: remove erroneous argparse dependency (#16584) 2020-05-11 12:56:07 -05:00
Michael Kuhn
5ed5c55ebd
mpich: Fix build with gcc@10: (#16568) 2020-05-11 12:55:36 -05:00
Amjad Kotobi
4c666034dc
r-rstudioapi : new version (#16574) 2020-05-11 12:49:27 -05:00
Amjad Kotobi
3ddf6c0845
r-rlang : new version (#16575) 2020-05-11 12:48:51 -05:00
Amjad Kotobi
5e348f7133
r-digest : version updated (#16578) 2020-05-11 12:43:38 -05:00
Andrew Gaspar
2c009a3226
Map the spack skylake arch to Kokkos BDW, rather than SKX (#16583) 
SKX includes AVX-512 extensions that consumer Skylake processors do
not have. Therefore, map Skylake to the prior arch to work on
these systems. Skylake-X processors will still map as the
skylake_avx512 spack arch and get the correct optimzations.
 2020-05-11 12:33:34 -05:00
Justin S
20a4e5efe8
stata: add new libpng dependency (#16582) 2020-05-11 12:32:36 -05:00