If you use git to clone a repository ssh, git transfers control the ssh
binary available on your path, if that ssh binary was built with
contradictory version of openssl/kerberos, then your git commands will
fail.
* sirius, update versions, fixes, add missing options
- sirius/spfft: depend on fftw-api
- cleanup +shared option
- sirius add option for memory pool
- sirius add version 6.5.3 and 6.5.4
- sirius: add spfft dependency for @master, @develop
* add nlcglib package
Robust wave function optimization for SIRIUS.
* add q-e-sirius package
based on q-e package
* Update var/spack/repos/builtin/packages/q-e-sirius/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* nlcglib: pass nvcc_wrapper to cmake
* Add 6.5.6
* Make flake8 happy
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
* canu: fix depends issue & using java instead of jdk
* Update var/spack/repos/builtin/packages/canu/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* typo error correction
* Adding recipe for `colorspacious` (a python package)
* Copyright year changed
* revert last commit on basic_usage.rst
* better with a good description
* fix according to failed test
* Update var/spack/repos/builtin/packages/py-colorspacious/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-colorspacious/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Nightly builds with MacOS started failing again
due to an upgrade of the default virtual environment
that now uses Python 3.8
This makes us hit #14102 and every build fails. This
commit should be reverted along with the fix to #14102.
* Additional versions of py-jsonschema.
* Tweak to force Maestro to use jsonschema@3.2.0:
* Correction of whitespace (flake8 error).
* Merges importlib's Python version conditons
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Add new versions of spfft
* Extend CudaPackage and use virtual fftw package
Co-authored-by: Simon Pintarelli <simon.pintarelli@cscs.ch>
* Add CUDA 11 compatibility note
* Depend on older cuda <= 10 for spfft <= 0.9.11
Co-authored-by: Simon Pintarelli <simon.pintarelli@cscs.ch>
* introduce logic for boost+context dependency and generic_context variant
* fix OTF2 instrumentation minor problem
* default coroutine impl depends on platform
* fix flake8
* add reference to ~generic_coroutines conflict info
* Update var/spack/repos/builtin/packages/hpx/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Octopus: Add support for version 10.0.
Fix compilation when using the MKL as a provider for BLAS/LAPACK. Octopus will now detect that the MKL also provides the FFTW API and will refuse to compile when both the FFTW library and the MKL are given to the configure script.
* Octopus: Add supported version range for libxc.
* berkeley-db: add version 18.1.40, update build options in package
* combine adamjstewart's changes
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* [kassiopeia] New package
* [kassiopeia] Remove master branch, update dependencies
* Update var/spack/repos/builtin/packages/kassiopeia/package.py
Unable to test since I do not have a license to intel-parallel-studio, but I see no reason why it would not work if.
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* [kassiopeia] depends_on mpi
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* [kassiopeia] cmake_args with self.spec.satisfies and elses
* [kassiopeia] args.extend -> args.append
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* h5py: explicitly specify version
hdf5@1.10.5 on Cray is wrongly detected as 1.8.4.
* Update var/spack/repos/builtin/packages/py-h5py/package.py
Thanks. Also had this first, then CI was complaining about line length ...
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Before:
```console
$ licensee diff --license mit LICENSE-MIT
Comparing to MIT License:
Input Length: 1092
License length: 1020
Similarity: 92.46%
diff --git a/LICENSE b/LICENSE
index 0ce42af..be0ff1c 100644
--- a/LICENSE
+++ b/LICENSE
@@ -1,3 +1,4 @@
{+spack project developers. see the top-level copyright file for details.+}
permission is hereby granted, free of charge, to any person obtaining a copy of
this software and associated documentation files (the "software"), to deal in
the software without restriction, including without limitation the rights to
```
After:
```console
$ licensee diff --license mit LICENSE-MIT
Comparing to MIT License:
Input Length: 1020
License length: 1020
Similarity: 100.00%
Exact match!
```
This gets us a 100% license match from GitHub's `licensee` tool.
`spack buildcache list` was trying to construct an `Arch` object and
compare it to `arch_for_spec(<spec>)`. for each spec in the buildcache.
`Arch` objects are only intended to be constructed for the machine they
describe. The `ArchSpec` object (part of the `Spec`) is the descriptor
that lets us talk about architectures anywhere.
- [x] Modify `spack buildcache list` and `spack buildcache install` to
filter with `Spec` matching instead of using `Arch`.
- [x] Make it easier to get a `Spec` with a proper `ArchSpec` from an
`Arch` object via new `Arch.to_spec()` method.
- [x] Pull `spack.architecture.default_arch()` out of
`spack.architecture.sys_type()` so we can get an `Arch` instead of
a string.
Ci is currently failing on brew update with the error:
```
Error: Cannot install bazelisk because conflicting formulae are installed.
bazel: because Bazelisk replaces the bazel binary
Please `brew unlink bazel` before continuing.
Unlinking removes a formula's symlinks from /usr/local. You can
link the formula again after the install finishes. You can --force this
install, but the build may fail or cause obscure side effects in the
resulting software.
```
Avoiding:
```
$ brew update
$ brew upgrade
```
solves the issue by preventing the risk of conflicting formulae
