Commit graph

30329 commits

Author SHA1 Message Date
Alec Scott
1b27a2dda5
code-server: add v4.11.0 (#36200) 2023-03-20 09:26:58 +01:00
Alec Scott
3ebe5939e3
autodiff: add v1.0.1 (#36199) 2023-03-20 09:26:24 +01:00
Alec Scott
c9a4bf8d3f
elfutils: add v0.189 (#35859) 2023-03-20 09:26:01 +01:00
Adam J. Stewart
973e37823c
py-tensorboard-data-server: add v0.7.0 (#36248) 2023-03-20 09:25:33 +01:00
Xavier Delaruelle
41d7fe0a50
modules tcl: fix autoload mechanism in template (#36237)
Adapt tcl modulefile template to call "module load" on autoload
dependency without testing if this dependency is already loaded or not.

The is-loaded test is not necessary, as module commands know how to cope
with an already loaded module. With environment-modules 4.2+ (released
in 2018) it is also important to have this "module load" command even if
dependency is already loaded in order to record that the modulefile
declares such dependency. This is important if you want to keep a
consistent environment when a dependent module is unloaded.

The "Autoloading" verbose message is also removed as recent module
commands will report such information to the user (depending on the
verbosity configured for the module command).

Such change has been test successfully with Modules 3.2 (EL7), 4.5 (EL8)
and 5.2 (latest) and also with Lmod 7 and 8 (as it is mentionned in
Spack docs that Lmod can be used along with tcl modules). Dependencies
are correctly loaded or unloaded, whether they are loaded/unloaded or
not.

This change fixes Tcl quoting issue introduced in #32853.

Fixes #19155.
2023-03-20 09:23:40 +01:00
Adam J. Stewart
1af863a1e3
bash: add v5.2.15 (#36245) 2023-03-20 09:14:41 +01:00
Adam J. Stewart
75714d30f5
gawk: fix build on Apple Silicon (#36246) 2023-03-20 09:14:00 +01:00
Alec Scott
d5e30ac5f1
diffutils: add v3.9 (#35852) 2023-03-20 08:37:36 +01:00
Alec Scott
8c4265f033
harminv: add v1.4.2 and update URL to maintained git repository (#36062) 2023-03-20 08:36:25 +01:00
Angus Gibson
b8b6ae42a0
py-setuptools-git-versioning: new package (#36123)
* py-setuptools-git-versioning: new package

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-03-19 20:02:14 -04:00
Wouter Deconinck
5532350d4b
qt-* (Qt6 pkgs): new version 6.4.3 (#36235) 2023-03-19 09:07:43 -05:00
Alec Scott
620effec1b
bumpversion: add v0.6.0 and bump2version dependency (#36021)
* bumpversion: add v0.6.0

* Add bump2version dependency package
2023-03-18 21:51:06 -06:00
Xavier Delaruelle
df97827a7b
Fix case spelling for Lmod and Tcl (#36215) 2023-03-19 01:42:50 +00:00
Wouter Deconinck
4ffdde94ef
py-hepunits: new versions 2.2.0, 2.2.1, 2.3.0, 2.3.1 (#35545)
* py-hepunits: new versions 2.2.0, 2.2.1, 2.3.0, 2.3.1

Python 2 support dropped in 2.2 series.

Ref: https://github.com/scikit-hep/hepunits/compare/v2.1.1...v2.3.1

* py-hepunits: py-hatchling as of version 2.3

* [@spackbot] updating style on behalf of wdconinc

* py-hepunits: only depends_on toml through 2.1.1

---------

Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2023-03-18 17:18:04 -05:00
Benjamin Meyers
5b04146f8a
New package py-pyhull (#36107)
* New package py-pyhull

* [@spackbot] updating style on behalf of meyersbs
2023-03-18 17:02:31 -05:00
Benjamin Meyers
eddbbb867d
New package py-seekpath (#36108)
* New package py-seekpath

* [@spackbot] updating style on behalf of meyersbs
2023-03-18 17:01:43 -05:00
Benjamin Meyers
32154e6fc7
New package py-pyisemail (#36112) 2023-03-18 17:00:46 -05:00
Adam J. Stewart
6618b0c830
py-scikit-image: add v0.20.0 (#36167)
* py-scikit-image: add v0.20.0

* [@spackbot] updating style on behalf of adamjstewart

---------

Co-authored-by: adamjstewart <adamjstewart@users.noreply.github.com>
2023-03-18 16:49:39 -05:00
Massimiliano Culpo
d84c6ad29e
cmake build system: make "generator" a variant (#35552) 2023-03-18 16:39:04 +01:00
Massimiliano Culpo
2f07c64f2d
Fix wrong computation of concrete specs due to a bug in intersects (#36194)
fixes #36190
2023-03-18 12:50:52 +01:00
Alec Scott
ca5cab8498
patchelf: add v0.17.2 (#36203) 2023-03-18 11:09:58 +01:00
Alec Scott
5f8ee20c7c
ffmpeg: add v6.0 (#35857)
* ffmpeg: add v6.0

* Add limit to py-torchvision to prevent ffmpeg v6.0
2023-03-18 02:47:44 -04:00
Harmen Stoppels
fd70a2cc07
cython: force through env variable (#35995) 2023-03-17 19:54:24 -04:00
Alec Scott
31201f91bc
libsigsegv: add v2.14 (#36070) 2023-03-17 18:39:26 -04:00
Ben Morgan
da0b76047d
geant4: new version 11.0.4 (#36185) 2023-03-17 17:58:42 -04:00
Massimiliano Culpo
0478e5f684
Improve wording of audit message (#36180) 2023-03-17 17:43:35 -04:00
Alec Scott
4f7c147d50
libpciaccess: add v0.17 (#36076) 2023-03-17 17:33:44 -04:00
Amintor Dusko
73a887ee7c
Update PennyLane and PennyLane Lightning (#35406) 2023-03-17 17:28:26 -04:00
John W. Parent
8195f27a66
Windows: properly handle symlink failures (#36003)
In the Windows filesystem logic for creating a symlink, we intend to
fall back to a copy when the symlink cannot be created (for some
configuration settings on Windows it is not possible for the user
to create a symlink). It turns out we were overly-broad in which
exceptions lead to this fallback, and the subsequent copy would
also fail: at least one case where this occurred is when we
attempted to create a symlink that already existed.

The updated logic expressly avoids falling back to a copy when the
file/symlink already exists.
2023-03-17 10:19:32 -07:00
Alec Scott
a60fa7ff7d
libxdmcp: add v1.1.4 (#36074) 2023-03-17 13:11:10 -04:00
Adam J. Stewart
6272853030
Bazel: limit parallelism (#36002)
* Bazel: limit parallelism

* Patch packages that don't directly invoke bazel

* Style fixes

* flag comes after build, not bazel

* flag comes after build, not bazel

* command is only attribute if specific package
2023-03-17 11:13:27 -05:00
Seth R. Johnson
507b42c54f
veccore: new version 0.8.1 (#36184) 2023-03-17 09:19:04 -04:00
Szilárd Páll
3897c1308e
Switch GROMACS build type to Release (#36181)
The current default RelWithDebInfo gives significantly slower builds
so it should not be the default.
2023-03-17 07:17:06 -06:00
Valentin Volkl
b54d208aea
boost: add patch for 1.81.0 (#35964) 2023-03-17 11:42:43 +01:00
Edoardo Aprà
612aa744f6
nwchem: add v7.2.0 (#36061) 2023-03-17 11:41:33 +01:00
Massimiliano Culpo
97193a25ce
Mitigation for GitVersion bug when no =reference is given (#36159)
* ASP-based solver: use satisfies instead of intersects

They are semantically equivalent for concrete versions,
but the GitVersion.intersects implementation is buggy

* Mitigation for git version bug

fixes #36134

This commit works around the issue in #36134, by using
GitVersion.satisfies instead of GitVersion.intersects

There are still underlying issues when trying to infer the
"reference version" when no explicit one is given, but:

1. They are not reproducible with our synthetic repo
2. They occur only when the `git.<xxx>` form of Git version
   is used

Here we just work around the user facing issue and ensure
the tests are correct with our synthetic repository.
2023-03-17 11:36:29 +01:00
Vicente Bolea
5bf96561ee
vtk-m: update to latest release (#35590)
* vtk-m: add v2.0.0
* Update var/spack/repos/builtin/packages/vtk-m/package.py

---------

Co-authored-by: Kenneth Moreland <morelandkd@ornl.gov>
2023-03-17 11:19:13 +01:00
Cameron Book
f2ba1d276b
nccmp: add more constrain to dependencies, add configure args (#35539) 2023-03-17 11:10:36 +01:00
dependabot[bot]
4e060ba933
build(deps): bump actions/checkout from 3.3.0 to 3.4.0 (#36140)
Bumps [actions/checkout](https://github.com/actions/checkout) from 3.3.0 to 3.4.0.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](ac59398561...24cb908017)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-03-17 10:58:57 +01:00
afzpatel
dd15c37021
hipcub and rocprim: enable testing (#35660) 2023-03-17 10:56:54 +01:00
Harmen Stoppels
141c154948
openssh: 9.2, 9.3 (#36162) 2023-03-17 10:31:39 +01:00
Alec Scott
e51447c2c0
nano: add v7.2 (#36148) 2023-03-17 10:16:27 +01:00
Adam J. Stewart
a84fb716a0
Update the PyTorch ecosystem (#36132)
* py-pytorch-lightning: add v2.0.0

* py-lightning-utilities: add v0.8.0

* Update all PyTorch packages

* Open-CE does not yet have patches for PyTorch 2 on ppc64le
2023-03-17 10:13:44 +01:00
M. Eric Irrgang
a11f06885f
Fix --test behavior for gromacs package. (#35674)
For `spack install --test=all gromacs`
* remove the `test` target from the `check()` call and just use
  the `check` target, in accordance with usual GROMACS test protocol
* build the test binaries explicitly during the build phase

Additional minor updates are necessary. This change
updates the package structure to the newer format with a
separate Builder class so we can override `check()`.
However, note that additional modernization should be
undertaken with care.
2023-03-17 10:11:22 +01:00
Massimiliano Culpo
8517a74f37
ASP-based solver: tweak heuristic, modify compiler encoding (#35989)
This PR does 2 unrelated things:
1. It changes the encoding of the compilers
2. It tweaks the heuristic for the solves in a0d88179074f81d13a3fad629a43d86334e7f982

Both were initially motivated by trying to get a performance gain but, while 2 showed significant speed-ups[^1], 1 instead didn't. I kept it anyhow, since I think the code related to compilers is more consolidated with the new encoding and we might get some performance improvement out of it if we can base our errors on the `node_compiler(Package, CompilerID)` atoms instead of `attrs`.

[^1]: In general the changes in the heuristic brought a ~10% speed-up on the tests I did. I'll post detailed results below.

Add a warning about compilers.yaml that is triggered if there are multiple compilers with the same spec, os and
target (since they can't be selected by users with the spec syntax only).
2023-03-17 00:39:41 -07:00
Alec Scott
34ef01a5c8
libx11: add v1.8.4 (#36075) 2023-03-17 00:04:07 -04:00
Michael Kuhn
86e49a63ce
lmod: add 8.7.20 (#36177) 2023-03-17 02:07:31 +01:00
John W. Parent
d76845e875
libpng package: build with CMake (#35105) 2023-03-16 16:44:53 -07:00
Matthew Thompson
97d6c741b0
Fix for ESMF post_install on macOS (#36087) 2023-03-16 16:32:54 -07:00
Bill Williams
09fd3e8e61
Add explicit configure args to fix instrumentation-time paths (#36089) 2023-03-16 16:30:48 -07:00