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Author SHA1 Message Date
eugeneswalker
81a7ae2c27
llvm: add variant: llvm_dylib (LLVM_BUILD_LLVM_DYLIB:Bool) (#19701) 2020-11-16 14:10:20 -08:00
Phil Tooley
42008e532f
WRF: Add version 3.9.1.1 and improve recipe robustness (#19882) 
* Add WRF 3.9.1.1 and improve recipe robustness

* Include version 3.9.1.1 as common benchmarking workload
* Fix compilation against recent glibc (detect spack installed libtirpc)
* Detect and handle failed compilation (upstream use make -i)

* WRF: PR changes round 1
fix build jobs
fix maintainers
fix pkgconfig dependency
use Executable to run compile stage
repair some overzealous autoformatting by black

* WRF: make recipe py26 compatible

* wrf: recipe review changes round 2

* more python 26 fixes
 2020-11-16 15:56:39 -06:00
Dr. Christian Tacke
8d50427c45
vgm: Switch all URLs to https (#19943) 2020-11-16 13:31:53 -06:00
Hadrien G
c512d0f408
[acts] Add versions 1.2.1 and 2.0.0 (#19936) 2020-11-16 13:28:55 -06:00
Ruben Di Battista
1fb8ae42e0
texlive: Fix install of @live version (#19941) 
The unattended install using the pre-compiled binaries (tl-install)
needs a .profile file or it goes in interactive mode blocking the
install process forever
 2020-11-16 13:26:31 -06:00
Satish Balay
6142ab56c7
Trilinos: update 13.0.1 (#19944) 2020-11-16 13:55:48 -05:00
Andreas Baumbach
a8fccdbddd
add new version py-wavelets@1.1.1 (#19930) 
* add new version py-wavelets@1.1.1

* also update dependencies

* Update package.py
 2020-11-16 10:41:17 -06:00
t-nojiri
793af74eb4
graphmap: Fix for aarch64 (#19935) 2020-11-16 10:41:00 -06:00
Matthieu Dorier
59d0c17654
Added new versions for the py-attrs package (#19938) 2020-11-16 10:39:49 -06:00
vvolkl
b6843e1a82
[dd4hep] switch to ninja generator to avoid running out of memory … (#19940) 
* [dd4hep] switch to ninja generator to avoid running out of memory while compiling ddparsers

* [dd4hep] format
 2020-11-16 10:38:50 -06:00
Dr. Christian Tacke
0aa55d426c
vmc: Add Version 1-0-p3 (#19942) 2020-11-16 10:36:32 -06:00
Andreas Baumbach
6aaa44c929
add new version py-tifffile@2020.10.1 (#19929) 
* add new version py-tifffile@2020.10.1

* also update dependencies

* Update package.py
 2020-11-16 10:08:40 -06:00
Tomoki, Karatsu
9c4733ab59
py-numpy: Add Fujitsu Fortran compiler to compiler type. (#19858) 
* py-numpy: Add Fujitsu Fortran compiler to compiler type.

py-scipy: Specify Fujitsu to fcompiler types.

* Create patches applicable to each version.
 2020-11-16 10:05:45 -06:00
Dr. Christian Tacke
5e904e37bb
singularity: added v3.6.4 (#19939) 2020-11-16 13:33:54 +01:00
Joseph Wang
b218991283
fix a typo in podio package script (#19928) 2020-11-15 11:33:19 -06:00
Xavier Delaruelle
9f24a4b783
environment-modules: add version 4.6.1 (#19926) 2020-11-14 20:24:54 -06:00
Brian Van Essen
55ec18a580
Bugfixes for lbann sw stack (#19903) 
* Added guard for setting CUB_DIR to only when cuda variant is true

* Added support for OpenMP on OSX platforms

* Updated the way that LBANN, Hydrogen, and DiHydrogen handle
apple-clang with OpenMP and Clang installed on OS X via brew.

* Fixed bug in spec resolution

* Fixed merge conflict

* Fixed typo

* Fixed flake8
 2020-11-14 18:59:12 -06:00
darmac
35511c178b
Add new package: druid (#19911) 2020-11-14 09:45:10 -06:00
ilbiondo
e6972c9d37
bpp-phyl-omics package (#19734) 2020-11-14 09:40:49 -06:00
G-Ragghianti
19b26f2938
PAPI package: added cuda and nvml support (#19896) 
* Added cuda support

* Added cuda and nvml variants

* Refined version conflict logic.
 2020-11-14 09:39:14 -06:00
ilbiondo
d439573c60
bpp-seq-omics package (#19733) 2020-11-14 08:35:27 -06:00
Adam J. Stewart
168dd6d03a
Don't use prefix.lib in tcl/tk/glib/etc (#19761) 2020-11-14 12:42:51 +01:00
darmac
cd7c2fca02
nbdkit: new package at v1.23.7 (#19922) 2020-11-14 12:39:13 +01:00
darmac
e549c32033
ncompress: new package at v4.2.4.6 (#19923) 2020-11-14 12:32:15 +01:00
Tomoki, Karatsu
e6b0019271
openblas: fix to build v0.3.11 or later with Fujitsu compiler. (#19853) 2020-11-14 12:29:30 +01:00
darmac
192bede002
libjson: new package at v0.8 (#19921) 2020-11-14 10:41:23 +01:00
darmac
3d6866cc1c
iproute2: new package at v5.9.0 (#19920) 2020-11-14 10:28:50 +01:00
darmac
a8cf529791
httping: new package at v2.5 (#19919) 2020-11-14 10:14:47 +01:00
darmac
ec13fe2216
hashcat: new package at v6.1.1 (#19918) 2020-11-14 10:14:12 +01:00
darmac
4a75871d70
argon2: new package at v20190702 (#19917) 2020-11-14 10:04:08 +01:00
darmac
2c43cf5b22
newt: new package at v0.52.21 (#19915) 2020-11-14 09:50:02 +01:00
Antonio Arena
ecc5ef3e7b
mathematica : added v12.1.1 (#19842) 2020-11-14 09:47:13 +01:00
Edoardo Aprà
6be5289e56
nwchem: remove patches for v6.6 (no longer supported) (#19906) 
Since spack no longer offers NWChem 6.6, there is no need of the patch lines.
 2020-11-14 09:45:18 +01:00
darmac
9ba6d485aa
ipcalc: new package at v0.2.3 (#19912) 2020-11-14 09:37:04 +01:00
Wouter Deconinck
98ac13619e
[gcc] depends_on diffutils (for all versions) (#19907) 2020-11-13 22:07:52 -08:00
Alexander Baumgarten
5f9de810ff
Updated STAR to version 2.7.6a (#19904) 2020-11-13 14:59:03 -06:00
Alexander Baumgarten
c0486f6768
Feature/r tximportdata (#19902) 
* # FIXME: Add a list of GitHub accounts to
    # FIXME: Add a list of GitHub accounts to
Package for r-tximportData

* Fixed file format / flake8 errors
 2020-11-13 14:14:36 -06:00
fodinabor
472c365b58
binutils: Fix checksum for 2.35.1 (#19901) 
As noted in #19899 and introduced by #19827
 2020-11-13 12:55:58 -06:00
Thomas Madlener
d5b89b422d
Add sio and add it as possible dependency for podio (#19875) 
Newest podio can use SIO as backend
 2020-11-13 12:43:43 -06:00
arjun-raj-kuppala
fbde1abc8c
AMD ROCm - HIP update and bump up version to 3.9.0 for rccl,debug agent, hip-rocclr and atmi (#19832) 
* AMD - Bumped up version for hip-rocclr, rocm-opencl, rocm-smi-lib

* AMD ROCm - HIP update and bump up version to 3.9.0 for rccl,debug agent, hip-rocclr and atmi

* Update package.py

* Update package.py

* Update package.py

* Update var/spack/repos/builtin/packages/hip/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-11-13 12:25:57 -06:00
eugeneswalker
3a3bf5387e
suite-sparse: mpfr, gmp needed for @5.8.0: (#19898) 2020-11-13 10:12:02 -08:00
Sreenivasa Murthy Kolam
b08744566d
bump up version for 3.9.0 (#19894) 2020-11-13 10:59:18 -06:00
t-nojiri
d2673ac56c
openfoam: Fix for aarch64 (#19803) 
* openfoam: Fix for aarch64

* openfoam: Add comment for openfoam-org
 2020-11-13 10:45:42 -06:00
Ganesh Kumar
d40a35e8d7
ROCm 3.9 Stage2 recipe (#19838) 
Co-authored-by: root <root@mlseqa-hyd-virt-srv-07.amd.com>
 2020-11-12 23:04:19 -06:00
Joseph Schoonover
d346e877ef
Add feq-parse package (#19891) 
Co-authored-by: Joe Schoonover <joe@fluidnumerics.com>
 2020-11-12 22:31:04 -06:00
Tim Haines
a1e9d584e1
binutils: add version 2.35.1 (#19827) 2020-11-12 19:05:24 -06:00
Robert Blake
aeafe18b49
openmpi: external detection support (#18600) 2020-11-12 13:03:35 -08:00
Adam J. Stewart
f46bd411f4
py-cython: python is a link dep (#19768) 2020-11-12 12:53:13 -08:00
Adam J. Stewart
2fc2a4cd2a
py-matplotlib: set LIBRARY_PATH to locate link deps (#19855) 
* py-matplotlib: set LIBRARY_PATH to locate link deps

* py-matplotlib: add v3.3.3
 2020-11-12 12:50:44 -08:00
Adam J. Stewart
37e51eb2a5
OpenSSL: libs may be in lib64 directory (#19862) 2020-11-12 12:45:45 -08:00
vvolkl
72e66bd01f
[gaudi] v35r0 (#19878) 
* [gaudi] v35r0

* [gaudi] format

* [gaudi] comments from #19878
 2020-11-12 14:43:06 -06:00
tcojean
978e85d669
Add smoke tests to Ginkgo. (#19888) 2020-11-12 14:42:34 -06:00
eugeneswalker
81cab3b271
suite-sparse: add deps: mpfr, gmp (#19883) 2020-11-12 11:29:07 -08:00
Morten Kristensen
8cf2806f00
py-vermin: add latest version 1.0.3 (#19886) 2020-11-12 13:23:38 -06:00
Wouter Deconinck
b0d2586f52
[acts] conflicts with %gcc@:7 since @0.23: due to c++17 <charconv> (#19881) 2020-11-12 13:08:12 -06:00
Brian Spilner
2a8dba48da
new release: cdo-1.9.9 (#19876) 2020-11-12 11:29:57 -06:00
t-nojiri
301b94d338
elpa: Fix for aarch64 (#19872) 2020-11-12 11:24:45 -06:00
Satish Balay
757b74aeff
xsdk@0.6.0 (#19846) 
Update:
 hypre@2.20.0
 mfem@4.2.0
 superlu-dist@6.4.0
 trilinos@13.0.1
 datatransferkit@3.1-rc2
 petsc@3.14.1
 dealii@9.2.0
 pflotran@xsdk-0.6.0
 alquimia@xsdk-0.6.0
 sundials@5.5.0
 plasma@20.9.20
 magma@2.5.4
 amrex@20.10
 slepc@3.14.0
 omega-h@9.32.5
 strumpack@5.0.0
 pumi@2.2.5
 tasmanian@7.3
 phist@1.9.3
 ginkgo@1.3.0
 py-libensemble@0.7.1
 precice@2.1.1
 butterflypack@1.2.1

New:
 heffte@2.0.0
 slate@2020.10.00

Variants:
 datatransferkit
 heffte
 slate

petsc: enable +cuda
sundials: enable +cuda +trilinos
strumpack: enable +cuda
 2020-11-12 11:15:29 -06:00
Desmond
9f7ad82665
Package/r bigalgebra (#19826) 
* py-json-get: new package at 1.1.1

* py-json-get: new package at 1.1.1

* r-bigalgebra: new package at 0.8.4

* r-bigalgebra: new package at 0.8.4 with corrections

* Added an additional change to tarball and dependencies

* removing accidentally added file

* Added tarball that uses mirror and removed redundant dependencies

* Fixed version and added dep.

* Updated checksum

* Fixed urls

* Added list_url

Co-authored-by: las_djorton <las_djorton@build.las.iastate.edu>
 2020-11-12 11:13:20 -06:00
Pieter Ghysels
d1493fb3d8
SuperLU-Dist: Add CUDA variant (#19847) 
* Add CUDA support to superlu-dist

* Use spec['cuda'].libs.directories[0] iso spec['cuda'].prefix.lib
so it works for both lib and lib64

The suggested:
args.append('-DTPL_CUDA_LIBRARIES=' +
            spec['cuda'].libs.ld_flags)
did not work because it does not link with cuBLAS.
 2020-11-12 08:57:44 -06:00
Jean-Paul Pelteret
821b195ba4
Fix scalapack build error (#19824) 2020-11-12 08:55:58 -06:00
Satish Balay
a99cc0fac0
kokkos add "graviton" to spack_micro_arch_map (#19869) 
* kokkos add "graviton" to spack_micro_arch_map

* also add "graviton2"
 2020-11-12 08:55:37 -06:00
Dr. Christian Tacke
b9f20c2351
yaml-cpp: Improve shared library building (#19866) 
* No version of yaml-cpp in spack can build shared AND
  static libraries at the same time.  So drop the "static"
  variant and let "shared" handle that alone.

  Or in other words: No version handles the
  BUILD_STATIC_LIBS flag.

* The flag for building shared libraries changed from
  BUILD_SHARED_LIBS to YAML_BUILD_SHARED_LIBS at some
  point. So just pass both flags.

* Use the newer define_from_variant.
 2020-11-11 20:05:58 -06:00
Dr. Christian Tacke
2929f59c03
msgpack-c: Add Version 3.1.1 (#19863) 2020-11-11 12:27:28 -06:00
Jen Herting
3dab441986
New package: py-cuml (#19474) 
* [py-cuml] created template

* [py-cuml] setup phases and added build_directory

* [py-cuml] added dependencies

* [py-cuml] depends on libcumlprims

* [py-cuml] requiring multigpu version

* [py-cuml] figuring out the best way to get concretization to happen cleanly

* [py-cuml] removed singlegpu variat from libcuml

* [py-cuml] depends on py-cudf

* [py-cuml] depends on cupy

* [py-cuml] fixed typoo

* [py-cuml] depends on py-scipy

* [py-cuml] depends on py-treelite

* [py-cuml] py-treelite is now a variant of treelite

* [py-cuml] depends on joblib

* [py-cuml] depends on py-scikit-learn

* [py-cuml] flake8

* [py-cuml] added homepage and description. removed fixmes

* [py-cuml] updated checksum
 2020-11-11 12:27:12 -06:00
Filippo Spiga
e828641d80
Adding support to build ucx development branch (#18089) 
* Enabling build of v1.9.x development branch.

* v1.8.1 is the preferred (stable) version.

* Fixing code style

Co-authored-by: Filippo Spiga <fspiga@nvidia.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-11-11 10:58:29 -06:00
Jen Herting
b660a2112f
New package: libcuml (#19471) 
* [libcuml] created template

* [libcuml] set cmake list dir

* [libcuml] added some dependencies

* [libcuml] adding some default cmake args

* [libcuml] depends on nccl

* [libcuml] temporarily disabling cuml prims building

* [libcuml] building internal faiss?

* [libcuml] added dependency treelite

* [libcuml] depends on google_test

* [libcuml] forcing single gpu per: https://github.com/rapidsai/cuml/issues/2528#issuecomment-657675957

* [libcuml] added prims?

* [libcuml] adding libcumlcomms ?

* Revert "[libcuml] adding libcumlcomms ?"

This reverts commit 0e0765b7d4d27bdc01d54d24e8c2f9eac1cb4eb2.

* Revert "[libcuml] added prims?"

This reverts commit d0b1f868ea5e425cc7d1a5ce7adc642258dfc38e.

* [libcuml] added varient single gpu

* [libcuml] removed variant singlegpu

* [libcuml] added homepage and description. removed fixmes

* [libcuml] flake8

* [libcuml] cleaning up leftover commented out code

* [libcuml] updated checksum added ucx dependency
 2020-11-11 10:55:57 -06:00
Sreenivasa Murthy Kolam
f5c7a3619a
add spack recipe for rocm version of the tensile (#19669) 
* add spack recipe for rocm version of the tensile

* fix flake8 error
 2020-11-11 10:55:23 -06:00
Greg Becker
229fc11fdb
axom: devtools require llvm clang-format (#19740) 
* follow-up to previous PR

* build type
 2020-11-11 10:54:24 -06:00
vvolkl
2c55d47c1e
[podio] set pythonpath correctly (#19779) 
* [podio] put python dir in python path

* Update var/spack/repos/builtin/packages/podio/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-11-11 10:53:56 -06:00
Kai Torben Ohlhus
a6011ccbb7
suite-sparse: add versions 5.8.0 and 5.8.1 (#19812) 
Update homepage URL and see release notes:
- https://github.com/DrTimothyAldenDavis/SuiteSparse/releases/tag/v5.8.1
- https://github.com/DrTimothyAldenDavis/SuiteSparse/releases/tag/v5.8.0
 2020-11-11 10:53:27 -06:00
t-nojiri
48093350c6
arbor: Add version 0.4 (#19839) 2020-11-11 10:50:32 -06:00
Stephen Hudson
56df3fcbaa
Add optional deps mpmath and deap to py-libensemble (#19852) 2020-11-11 10:45:16 -06:00
Keita Iwabuchi
8edd245bb3
Metall package: add v0.6 (#19854) 
* Metall: add version 0.2

* Add Metall v0.3

* Update Metall package to v0.4 and v0.5.

* Metall package: add v0.6
 2020-11-11 10:43:00 -06:00
t-nojiri
3167aec0ab
ace: Add version 6.5.12 (#19856) 2020-11-11 10:42:30 -06:00
Mark Olesen
a90324a5b2
openfoam: remove mplibUSER provisioning (#19861) 
- has never been used by the spack package or by the upstream package

Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
 2020-11-11 10:38:50 -06:00
Ganesh Kumar
b1ca2a4346
ROCm3.9 recipe for rocblas, hipblas & rocsolver (#19841) 
* ROCm3.9 recipe for rocblas, hipblas & rocsolver

* review comments

* review comments

Co-authored-by: root <root@mlseqa-hyd-virt-srv-07.amd.com>
 2020-11-11 10:24:25 -06:00
Justin S
15fbbdea7d
soapdenovo2: add 242 (#19849) 2020-11-10 20:12:28 -06:00
Christoph Junghans
f7e3ef1b5c
votca-xtp: update deps (#19850) 2020-11-10 15:01:25 -07:00
t-nojiri
dd96a86511
abi-dumper: Add phases (#19807) 2020-11-10 12:53:39 -06:00
Phil Tooley
db5aa927db
py-torchvision: gather correct cuda_arch setting from py-torch (#19845) 
* py-torchvision: gather correct cuda_arch setting from py-torch dependency

* py-torchvision: remove unneeded variant
 2020-11-10 12:28:01 -06:00
Daryl W. Grunau
f7f4171d4e
py-scipy: set F90 for all compilers (#19818) 
* set F90 when compiling with Intel

* set F90 for all compilers

Co-authored-by: Daryl W. Grunau <dwg@lanl.gov>
 2020-11-10 10:52:54 -06:00
Wouter Deconinck
2913903e6a
[geant4] depends_on glu when +opengl (#19821) 2020-11-10 10:29:21 +00:00
Adam J. Stewart
65cef0a3ad
py-gpytorch: add v1.2.1 (#19796) 2020-11-09 20:24:35 -05:00
h-denpo
d8d0935a24
saga-gis: add "depends_on('libsm', type='link')" (#19805) 2020-11-09 16:46:33 -06:00
Kai Torben Ohlhus
4e2f27141c
openblas: Add versions 0.3.11 and 0.3.12 (#19811) 
[OpenBLAS 0.3.11](https://github.com/xianyi/OpenBLAS/releases/tag/v0.3.11) and [OpenBLAS 0.3.12](https://github.com/xianyi/OpenBLAS/releases/tag/v0.3.12) were released.
 2020-11-09 16:33:54 -06:00
Wouter Deconinck
f69643512c
[opencascade] depends_on libxext, libxmu, libxt, libxi (#19823) 
* [opencascade] depends_on libxmu and libxi

* [opencascade] depends_on libxext and libxt
 2020-11-09 16:24:51 -06:00
Satish Balay
01188396da
Trilinos: add 13.0.1 (#19822) 2020-11-09 16:06:27 -05:00
Erik Schnetter
9619f77550
spiral: new version 8.2.0 (#19794) 
* spiral: new version 8.2.0

* spiral: Sort versions anti-chronologically
 2020-11-09 14:32:49 -06:00
Toyohisa Kameyama
52eecad65c
py-pygps: new package. (#19774) 
* py-pygps: new package.

* fixed url.
 2020-11-09 14:32:10 -06:00
Morten Kristensen
a047ea84a3
py-vermin: add latest version 1.0.2 (#19820) 2020-11-09 14:31:21 -06:00
Satish Balay
a0216922f1
add sundials 5.5.0 (#19819) 
(with xsdk build fixes, including mkl, superlu-dist)

Co-authored-by: Cody J. Balos <balos1@llnl.gov>
 2020-11-09 13:59:55 -06:00
Amjad Kotobi
04fdcbed09
ruby-narray: Added git master branch (#19817) 2020-11-09 13:04:22 -06:00
ilbiondo
740cc4058b
tskit package (#19725) 
* tskit package

* Update var/spack/repos/builtin/packages/tskit/package.py

I can't see any hard requirement for 3.6:

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* fixes following PR review

* Update var/spack/repos/builtin/packages/tskit/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-11-09 13:03:09 -06:00
Ethan Stam
e73e7cf0ad
ParaView: correct path for PARAVIEW_VTK_DIR (#19770) 
* ParaView: correct path for PARAVIEW_VTK_DIR

* Update formatting
 2020-11-09 13:02:00 -06:00
Mark Olesen
ac8a07ef4a
openfoam / openfoam-org : handle arch naming differences #19777 (#19778) 
- issue caused by the openfoam-org internal naming for their
  newly added support for aarch64

Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
 2020-11-08 20:26:51 -06:00
Michael Kuhn
0857648313
perl: make 5.32.0 the preferred version (#19799) 
Version 5.32.0 has been out for quite a while and Linux distributions
are shipping it. I have also done a rebuild of some common packages with
the new version. Let's make it the preferred version.
 2020-11-08 10:54:22 -06:00
Adam J. Stewart
1e35faa932
Bash: add new patches, maintainer (#19798) 2020-11-07 20:13:35 -06:00
mic84
765b4c5d2f
amrex: new options names for version > 20.11 (#19769) 
* amrex: new options names for version > 20.11

* amrex: change option name DIM -> AMReX_SPACEDIM

* Update var/spack/repos/builtin/packages/amrex/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-11-07 14:10:08 -06:00
Brian Van Essen
9cd0f00607
Added code to help DiHydrogen find cuDNN and CUB (#19783) 
* Added code to help DiHydrogen find cuDNN and CUB

* Cleaning up dependencies on CUB and adding guards for when newer
versions of CUDA include CUB and it should be excluded.

* Changed Hydrogen to disable half support by default.

* Have LBANN force Hydrogen and DiHydrogen to build without half when the variant is disabled.

* Added explicit variants to enusre that if LBANN is build without Cuda,
Aluminum, or Half support, it enforces those constraints for Hydrogen
and DiHydrogen.  Cleaned up the use of Python extend versus append in
LBANN and DiHydrogen recipes.

* Fixed Flake8
 2020-11-07 14:09:00 -06:00
Michael Kuhn
887bf734e4
fdupes: new package (#19747) 2020-11-07 14:08:15 -06:00
vvolkl
1d7d4a9071
[evtgen] add env var (#19787) 
* [evtgen] add env var

* Update var/spack/repos/builtin/packages/evtgen/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-11-07 14:06:41 -06:00
Itaru Kitayama
e87266c646
Add the scorep package dependency. (#19742) 
Co-authored-by: Itaru Kitayama <itaru.kitayama@riken.jp>
 2020-11-06 21:18:49 -06:00
Dr. Christian Tacke
c8b92ef34b
fmt: Add Version 7.1.2 (#19756) 2020-11-06 21:12:45 -06:00
Dr. Christian Tacke
3b4558fe6c
fairlogger: Add Version 1.9.0 (#19758) 2020-11-06 21:12:19 -06:00
Chen Wang
d085d53ebc
New version of Recorder: 2.1.6 (#19760) 2020-11-06 21:11:49 -06:00
eugeneswalker
fbc7cefcf7
make TIMER compatible with LLVM F18 (#19765) 2020-11-06 21:11:13 -06:00
Thomas Madlener
381305da0f
[root] fix package definition (#19775) 2020-11-06 21:04:23 -06:00
darmac
1d52bbdf17
Add new package: predixy (#19776) 2020-11-06 21:03:33 -06:00
Andrew W Elble
dcf3d8332a
cp2k: fix lmax variant to use tuple (#19780) 
* cp2k: fix lmax variant to use tuple

discovered during testing #19501

@dev-zero

* retain conversion to string
 2020-11-06 20:58:38 -06:00
Cyrus Harrison
ef9b8da282
add new vtk-h versions (#19785) 2020-11-06 20:53:36 -06:00
eugeneswalker
8dc8155ed5
fast-global-file-status needs elf (#19789) 2020-11-06 20:52:19 -06:00
eugeneswalker
73773ef9f3
spot: add v2.9.4 (#19790) 2020-11-06 20:51:48 -06:00
Michael Kuhn
f447657395
expat: add 2.2.10 (#19791) 2020-11-06 20:51:04 -06:00
Michael Kuhn
d8f2e54ebf
py-setuptools: add 50.3.2 (#19792) 2020-11-06 20:50:17 -06:00
Michael Kuhn
010ad6011e
glib: add 2.66.2 and 2.64.6 (#19793) 2020-11-06 20:49:21 -06:00
Tom Payerle
07b1ddee23
virtualgl: Change virtual jpeg dependency to libjpeg-turbo dep (#19795) 
See #19784

virtualgl CMake system is looking for a specific libjpeg-turbo include
file, not present in libjpeg (currently the only other jpeg provider)
 2020-11-06 20:47:09 -06:00
Adam J. Stewart
319c4f2e9e
meson: set STRIP on macOS (#19677) 
* at-spi2-core: add new version

* Add strip hacks

* meson: set STRIP on macOS
 2020-11-07 00:34:47 +01:00
ilbiondo
a3854700fb
cget package (#19728) 
* cget package

* Update var/spack/repos/builtin/packages/cget/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/cget/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/cget/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-11-06 16:39:42 -06:00
Frank Willmore
2df73cae38
Mumps oneapi (#19786) 
added oneapi compiler to directives for mumps package

Co-authored-by: Frank Willmore <willmore@anl.gov>
 2020-11-06 13:56:42 -08:00
Andrew W Elble
f59bbf9c3a
py-grpcio: workaround build failures pending new release (#19710) 
https://github.com/grpc/grpc/pull/24449 grpc/grpc#24248
 2020-11-06 15:02:11 -05:00
Jen Herting
1f8ca07f46
New package: code-server (#16076) 
* [code-server] created template

* [code-server] installing base server

* [code-server] added description and homepage

* [code-server] removed fixmes

* [code-server] git version > 2 is recommended

* [code-server] added version 3.1.1

* [code-server] flake8

* [code-server] added version 3.4.1

* [code-server] cp() -> install_tree()

* [code-server] removes predefined utilies

* [code-server] ln() -> symlink()
 2020-11-06 12:56:45 -06:00
Jen Herting
1b18e8fbad
New Package: libcumlprims (#19108) 
* [libcumlprims] created template

* [libcumlprims] setting up version urls and added versions

* [libcumlprims] added dependencies

* [libcumlprims] installing prebuild binaries

* [libcumlprims] fixing dependencies

* [libcumlprims] trying to fix cumlprims includedir

* [libcumlprims] updated envvar to SPACK_INCLUDE_DIRS

* [libcumlprims] typoo

* [libcumlprims] added homepage and description. removed fixmes

* [libcumlprims] cp -> install_tree

* [libcumlprims] removed unused import

* [libcumlprims] using new version of updating header files env vars

* [libcumlprims] flake8
 2020-11-06 12:55:29 -06:00
Adam J. Stewart
3953f6af95
oneDNN: add v1.7 (#19718) 2020-11-06 11:45:33 -06:00
Adam J. Stewart
3c4ee6d3cb
py-scipy: add v1.5.4 and master (#19757) 2020-11-06 11:45:14 -06:00
Adam J. Stewart
df3cc079eb
GDAL: add v3.2.0 (#19685) 
* GDAL: add v3.2.0

* Fix typo: satisfes -> satisfies

Co-authored-by: Andrew W Elble <aweits@rit.edu>

Co-authored-by: Andrew W Elble <aweits@rit.edu>
 2020-11-06 11:42:46 -06:00
Adam J. Stewart
e26d01022e
py-numpy: add v1.19.4 (#19678) 2020-11-06 11:41:48 -06:00
Sheng Di
2cb676e8d7
add z-checker (#19738) 
* revise z-checker's package.py

* add mpi dependency to z-checker

* add one whitespace required by Flake8

* trailing whitespace

Co-authored-by: Sheng Di <sdi1@anl.gov>
 2020-11-06 07:48:11 -06:00
Brian Van Essen
f041876470
Added CUB dependency to Aluminum (#19737) 
* Added CUB dependency to Aluminum

* Added hash for version 0.6.0

* Added a maintainer field and slight cleanup.

* Cleanup extend versus append
 2020-11-05 18:01:49 -06:00
Brian Van Essen
16c8cdaef7
LBANN update HWLOC versions (#19683) 
* Updates in LBANN an Aluminum code now allow working with versions
HWLOC 1.11.x and 2.x and up.

* Updating the minimum CMake version to address a pending PR in LBANN
that will require C++17 support and needs CMake to properly separate
the compiler flags from nvcc.

* Clarified the support for different versions of HWLOC in LBANN
 2020-11-05 16:28:27 -06:00
ilbiondo
dcd514c321
filtlong package (#19732) 
* filtlong package

* Update var/spack/repos/builtin/packages/filtlong/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-11-05 11:04:24 -06:00
ilbiondo
4c254c6c9f
bamaddrg package (#19729) 
* bamaddrg package

* Change version to URL rather than git
 2020-11-05 11:02:43 -06:00
Andrew W Elble
08e825f474
kokkos-legacy: fix host_arch/gpu_arch variants (#19754) 
'default' specifies a value that is not present in 'values'.
 2020-11-05 17:31:11 +01:00
Andrew W Elble
6dc25e7dbf
py-pykwalify: fix conflict directive (missing '^') (#19753) 2020-11-05 17:30:32 +01:00
Andrew W Elble
fa7ba11d1a
py-quantities: fix conflict directive (missing '^') (#19752) 2020-11-05 17:30:08 +01:00
Andrew W Elble
9bca9611c5
py-flye: fix conflict directive (missing '%') (#19751) 2020-11-05 16:53:24 +01:00
Andrew W Elble
9908e7a590
pfunit: fix conflict directive (missing '+') (#19750) 2020-11-05 16:26:26 +01:00
Andrew W Elble
d7335185e3
heffte: fix conflict directive (missing '^') (#19749) 2020-11-05 16:26:03 +01:00
Adam J. Stewart
09ec3e9268
Update packages.yaml format references in packages (#19741) 2020-11-05 15:44:00 +01:00
Andrew W Elble
c4b4cd4973
py-llvmlite: fix llvm compatibility version (#19739) 
won't build with llvm 11
 2020-11-04 15:17:19 -06:00
Chris White
4cd711cb79
Axom: update package (#19717) 
* update spack package from axom's main repo

* flake8, plus loop over possible clangformat paths
 2020-11-04 14:37:24 -06:00
Jeremy
6f4e2e58c3
10.1 release and various bug fixes for SST packages (#19719) 2020-11-04 12:47:41 -06:00
arjun-raj-kuppala
cc0a585816
AMD - Bumped up version for hip-rocclr, rocm-opencl, rocm-smi-lib (#19721) 2020-11-04 12:44:59 -06:00
Sreenivasa Murthy Kolam
3daa7b7b40
update rocm-bandwidth-test,rocm-dbgapi,rocprofiler for rocm 3.9.0 (#19724) 
* update rocm-bandwidth-test,rocm-dbgapi,rocprofiler for rocm 3.9.0

* bump up rocm-gdb for rocm-3.9.0
 2020-11-04 12:43:40 -06:00
ilbiondo
ab046403f6
admixtools package (#19727) 2020-11-04 12:37:15 -06:00
Satish Balay
5b02910e9c
petsc add version 3.14.1 (#19730) 2020-11-04 12:27:11 -06:00
Veselin Dobrev
5511c29869
New MFEM version: 4.2 (#19684) 2020-11-04 12:26:39 -06:00
Robert Maynard
823a3fa646
Added HIP support to VTK-m package (#19523) 2020-11-04 12:25:17 -06:00
Satish Balay
c2b943c209
Trilinos: fix error when configuring downstream dependency 2020-11-04 11:28:14 -05:00
darmac
44d406a1aa
Add new package: abi-compliance-checker (#18737) 
* Add new package: abi-compliance-checker

* refine dependencies

* change exuberant-ctags to universal-ctags
 2020-11-04 14:37:24 +01:00
Andrew W Elble
efb26bb14f
libusb: disable udev (#19713) 
* libusb: disable udev

spack has no libudev/systemd package currently

* convert to AutotoolsPackage

* remove spack import
 2020-11-03 16:47:38 -06:00
Andrew W Elble
ddd2aa0ffc
sirius,spfft: fix defaults for amdgpu_target to be str, not tuple (#19660) 2020-11-03 12:43:16 -06:00
Glenn Johnson
6bcb7128e6
Regenerate patch for gate to include SGE script (#19663) 
The previous patch left out the SGE.script file.
 2020-11-03 12:42:40 -06:00
Glenn Johnson
4ba7ad5162
New package - gatepet2stir (#19664) 2020-11-03 12:41:47 -06:00
Sreenivasa Murthy Kolam
e93ac1a8bd
bump up hsakmt-roct ,hsa-rocr-dev,llvm-amdgpu version for 3.9.0 release (#19668) 
* bump up version for 3.9.0 release

* update version of rocminfo for rocm-3.9.0

* bump up rocm-cmake version for rocm-3.9.0

* bump up rocm-smi and rocmdevice-libs for 3.9.0

* bumpup comgr version for rocm_ 3.9.0

* bump rocm-clang-ocl for rocm-3.9.0

* bump hipify-clang for rocm-3.9.0
 2020-11-03 12:39:40 -06:00
Andrew W Elble
886ae9a83f
speexdsp: fix link dependency on FFT library (#19714) 
without this, the library does not have a dependency
on the fft lib it was built with.
 2020-11-03 12:36:24 -06:00
Desmond
95d63afa58
Package/py json get (#19689) 
* py-json-get: new package at 1.1.1

* py-json-get: new package at 1.1.1

Co-authored-by: las_djorton <las_djorton@build.las.iastate.edu>
 2020-11-03 12:35:26 -06:00
Andrew W Elble
b9d12c93ef
disable tests to fix build. (#19697) 2020-11-03 12:34:17 -06:00
mic84
001f90f411
amrex: new version 20.11 (#19691) 
* amrex: new version 20.11

* Fix formatting issues
 2020-11-03 12:33:45 -06:00
Geoffrey Oxberry
2c511a7dd0
new package: fprettify 0.3.6 (#19699) 2020-11-03 12:31:29 -06:00
Andrew W Elble
11fb0e17b0
py-pygobject: new version 3.38.0 (#19709) 
fix to allow Gtk and others work from 'import gi' etc.
 2020-11-03 12:29:59 -06:00
darmac
cefbc39356
Add new package: libbinio (#19706) 2020-11-03 12:27:45 -06:00
darmac
ffec64ce30
Add new package: jose (#19707) 2020-11-03 12:27:22 -06:00
darmac
b7421c1476
Add new package: libdatrie (#19708) 2020-11-03 12:26:54 -06:00
Daniel Arndt
6492b9a84e
Use commit instead of branch as version for dtk 3.1-rc2 (#19712) 2020-11-03 12:25:26 -06:00
Char Aznable
859fbae4fa
Trilinos: support cuda, hwloc, Kokkos_ARCH_* and c++ std (#19119) 2020-11-03 12:07:20 -06:00
Elliot Saba
771e8b6294
[julia]: CPU names are LLVM-style, must map across (#19549) 
In this case, the `zen2` architecture is unknown; Spack must use the
LLVM-style `znver2` target instead.
 2020-11-03 12:04:29 -06:00
Pieter Ghysels
8cc08bd88b
Trilinos: Add STRUMPACK dependency (#19560) 
* Trilinos: Add STRUMPACK dependency

* break long lines, flake8 cleanup

* Use spec['strumpack'].libs.directories[0]
instead of spec['strumpack'].prefix.lib
because libraries may be in lib or lib64.

Likewise use headers.directories[0] iso prefix.include.

Suggested by adamjstewart
 2020-11-03 12:04:12 -06:00
Wouter Deconinck
cd625e5974
[dire] dire is included in pythia8@8300: so dire depends_on adjusted (#19628) 2020-11-03 12:03:48 -06:00
Geoffrey Gunter
125b80d193
range-v3: add version 0.11.0 (#19639) 
* range-v3: add version 0.11.0

This release drops support for llvm-3.9 per the release notes.

https://github.com/ericniebler/range-v3/releases/tag/0.11.0

* range-v3: rename 'develop' version to 'master'

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-11-03 12:03:19 -06:00
Satish Balay
dc3d03ed30
superlu-dist: update to version 6.4.0 (#19682) 2020-11-03 12:02:53 -06:00
Satish Balay
5b33157a45
petsc@3.14 update superlu-dist dependency [keep it open-ended for both petsc and superlu-dist future versions] (#19686) 2020-11-03 12:01:14 -06:00
Satish Balay
294715282a
py-petsc4py: add version 3.14.0 (#19681) 2020-11-03 12:00:50 -06:00
Tim Haines
7649186988
Elfutils: added v0.182 (#19700) 2020-11-03 16:37:35 +01:00
darmac
a920ef50dd
Add new package: istio (#17829) 2020-11-03 08:19:43 -06:00
darmac
5a54e39d71
Add new package: py-boom (#18811) 
* Add new package: py-boom

* change name to py-boom-boot-manager
 2020-11-03 08:18:28 -06:00
dunatotatos
4637d97d41
snakemake: add upper limit to allowed python versions (#19705) 
Running v3.1.2 with Python 3.7 returns a SyntaxError close to `async=True`.
 2020-11-03 12:13:00 +01:00
darmac
03b7404316
Add new package: abi-dumper (#18738) 
* Add new package: abi-dumper

* refine dependencies
 2020-11-03 11:20:06 +01:00
Brian Van Essen
d38fdb3854
Update cuDNN packages to check Power installation (#19620) 
* Updated cuDNN package to check to make sure that target directory
exists before linking it.

* Fixed flake8

* Fixed Flake8
 2020-11-02 20:08:44 -06:00
Hervé Yviquel
b4ea74c11b
allow ucx to build with more recent version of gdrcopy (#19606) 
* allows UCX since v1.7 to build with more recent version of gdrcopy (v2.X)

* Update var/spack/repos/builtin/packages/ucx/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-11-02 15:53:11 -06:00
Satish Balay
2ca894bd1e
pumi add version 2.2.5 (#19680) 2020-11-02 14:02:50 -06:00
Satish Balay
4d6c9a8f29
omega-h: add version 9.32.5 (#19679) 2020-11-02 12:50:10 -06:00
Seth R. Johnson
62eab8923e
ROOT: use native CMakePackage functions in packages.py (#19642) 
* root: update to built-in CMakePackage functions

* root: Disable options from missing variants

* Remove modification of CMAKE_PROGRAM_PATH
 2020-11-02 16:21:44 +00:00
Scott McMillan
f621e97f47
Fix issue with NAMD patch not applying cleanly (#19675) 
Co-authored-by: Scott McMillan <smcmillan@nvidia.com>
 2020-11-02 10:12:15 -06:00
Tiziano Müller
acc075d79d
llvm: fix +lldb build with external ncurses on openSUSE (#19627) 
fixes #19625
 2020-11-02 07:39:21 -06:00
Harmen Stoppels
4fe56de72e
hip: revert using libs.directories[0] instead of prefix.lib (#19671) 
Currently fails with:

 Error: NoLibrariesError: Unable to recursively locate rocm-device-libs libraries
 2020-11-02 09:54:29 +01:00
eugeneswalker
b2d6c63421
hip: setup run environments (#19637) 
* hip: rocminfo is a runtime requirement

* hip: +setup_run_environment, +setup_dependent_run_environment

* hip: run environment: get lib dir using libs.directories[0], not prefix.lib

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-11-01 21:52:06 -06:00
Adam J. Stewart
a4dd8d5582
Scalapack: don't apply patches twice (#19662) 2020-11-01 15:15:04 -08:00
Adam J. Stewart
ea8ba48a32
meson: add new version, external find support (#19658) 2020-11-01 15:33:14 -06:00
Adam J. Stewart
750027e80f
libepoxy: remove meson dependency (#19659) 2020-11-01 16:11:46 -05:00
Adam J. Stewart
854aed2571
krb5: fix build with Apple Clang 12 (#19657) 2020-11-01 16:11:40 -05:00
Hervé Yviquel
f62efe5e2e
Fix rdma-core package installation (#19643) 
* add python-docutils dependency

* adds symlink to script for better compatibility if py-docutils installation

* Improve post_install phase of py-docutils

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* fix review of rdma-core package

* improve formating of py-docutils package

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-11-01 10:08:06 -06:00
Andrew W Elble
ffd5f6b196
arborx: fix depends_on conditional (missing '+') (#19655) 2020-11-01 10:07:45 -06:00
Andrew W Elble
68ab6b252a
hpl: fix conflict directive (missing '^') (#19656) 2020-11-01 10:07:08 -06:00
Andrew W Elble
3630a8a87a
root: conflict is with a dependency (#19654) 2020-11-01 15:11:38 +01:00
Massimiliano Culpo
e4a5a06e87
gromacs: simplified use of targets (#19646) 2020-11-01 13:16:59 +01:00
Massimiliano Culpo
77fc458d29
opencv: fixed conflict firectives (missing '^') (#19645) 
See https://github.com/spack/spack/pull/19501#issuecomment-718406357
 2020-10-31 19:05:13 -05:00
Tim Haines
6b35324cf3
elfutils: add support for version 0.181 (#19634) 
This also includes handling of the new libdebuginfod flags.
 2020-10-31 13:03:04 -05:00
Jerome Soumagne
2cf1606896
mercury: update to v2.0.0 (#19635) 
Remove deprecated selfforward option, on by default

Rename verbose option to debug option
 2020-10-31 13:02:03 -05:00
Geoffrey Gunter
826ed5ff24
fmt: add version 7.1.0 (#19638) 2020-10-31 12:58:37 -05:00