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1635 commits

Author SHA1 Message Date
Mario Melara
33e1dcc476 Adding mock package file for external module 2016-05-28 10:14:40 -07:00
Gregory Becker
9dad7c2ace re-merged mainline develop 2016-05-27 13:13:19 -07:00
Greg Lee
6dcdb50a3e Merge branch 'develop' of https://github.com/llnl/spack into develop 2016-05-27 12:44:57 -07:00
Greg Lee
0ae1298d25 updated libdwarf version and dwarfdump build 2016-05-27 12:43:13 -07:00
Adam J. Stewart
dd5a6914f1 Undo changes to flex 2016-05-27 12:56:43 -05:00
Todd Gamblin
f6a0cd1bf8 Merge pull request #973 from eschnett/eschnett/openmpi-verbs 
Auto-detect verbs location
 2016-05-27 11:01:44 -05:00
Todd Gamblin
7b063e3e6c Merge pull request #975 from adamjstewart/features/stream 
Add STREAM benchmark package
 2016-05-27 10:59:13 -05:00
Todd Gamblin
dc4ca26441 Merge pull request #992 from davydden/update/dealii 
Update/dealii
 2016-05-26 17:39:37 -05:00
Todd Gamblin
96f65479e7 Merge pull request #993 from xjrc/packages/metis 
Update Package : METIS/ParMETIS
 2016-05-26 17:37:33 -05:00
Denis Davydov
040c122719 dealii: formatting 2016-05-26 23:00:22 +02:00
Denis Davydov
0036483ded dealii: don't hardcode blas and mpi; minor fixes to dependencies 2016-05-26 18:07:27 +02:00
Todd Gamblin
76d42b5200 Merge pull request #982 from trws/rust 
Rust
 2016-05-25 15:15:51 -05:00
Joseph Ciurej
734fb459a4 Fixing a small bug with metis@4+shared installs on the Mac platform. 2016-05-25 12:27:52 -07:00
Joseph Ciurej
483ec0d762 Added preliminary improved testing code for METIS@:4. 2016-05-24 16:13:52 -07:00
Joseph Ciurej
c9ba73d931 Added staging support and improved error handling for METIS@:4 installs. 2016-05-24 16:05:29 -07:00
Joseph Ciurej
b5d0a38860 Fixed a few linking/testing bugs in the METIS@:4 install method. 2016-05-24 15:03:21 -07:00
Greg Lee
1bca69f272 updated launchmon url and version 2016-05-24 14:54:09 -07:00
Joseph Ciurej
064d3584c0 Updating 'metis' and 'parmetis' to conform to PEP8 standards. 2016-05-24 12:28:05 -07:00
Joseph Ciurej
0ef6843d85 Improved MPI path specification for ParMETIS using PR #893 features. 2016-05-24 12:28:05 -07:00
Joseph Ciurej
9c95ec0b29 Updated and added new versions to the METIS/ParMETIS packages. 
- Added a 'url_for_version' function to the METIS/ParMETIS packages.
- Added installation support for METIS@5.0.2 and ParMETIS@4.0.2.
- Changed the 'double' variant to 'real64' to make it more consistent
  with the 'idx64' variant naming.
- Removed an unnecessary dependency on gdb.
 2016-05-24 12:28:05 -07:00
Denis Davydov
c78349a3a4 octave: fix formatting 2016-05-23 15:08:10 +02:00
Denis Davydov
ce3146e91a octave: add missing dependencies and update to 4.0.2 2016-05-23 14:50:06 +02:00
Tom Scogland
00de72272d rust compiler/builder package, new llvm variants 2016-05-22 11:16:00 -07:00
Tom Scogland
425beb4d97 updates for rust-bindgen 2016-05-22 11:16:00 -07:00
Tom Scogland
404b7c7c4f initial rust support 2016-05-22 11:16:00 -07:00
Erik Schnetter
09eed08b9c Auto-detect verbs location 2016-05-20 16:24:48 -04:00
Todd Gamblin
d94972503a Merge pull request #964 from davydden/update/tbb 
tbb: add 4.4.4; raise InstallError when building 4.4.3 with GCC6.1
 2016-05-19 22:44:03 -07:00
Nicolas Richart
2e77cc635e missing @ in version definition 2016-05-20 00:51:58 +02:00
Nicolas Richart
a233ed2de7 changes scotch package to make he coverage test pass 2016-05-20 00:42:34 +02:00
Nicolas Richart
a51566ec6e changes to simplify the esmumps variant for version < 6.0.0 + typos corrections, according to the remarks on PR #979 2016-05-20 00:31:12 +02:00
Nicolas Richart
1bf306bbbd Adding +metis variant to scotch + minor changes 2016-05-19 17:26:44 +02:00
Gregory Becker
9f59c128be Partial merge of mainline develop 2016-05-18 15:13:40 -07:00
Tom Scogland
29635b7bbd initial docs for find and flake8 cleanup 2016-05-18 14:04:39 -07:00
Adam J. Stewart
434ff28af4 Add STREAM benchmark package 2016-05-18 15:14:21 -05:00
Todd Gamblin
d391670755 Merge pull request #966 from verolero86/develop 
Add option to disable VT support in openmpi package
 2016-05-18 08:36:23 -07:00
Todd Gamblin
78c46aab35 Merge pull request #969 from Rombur/boost 
Add boost 1.61.0
 2016-05-18 08:35:51 -07:00
Todd Gamblin
637da63506 Merge pull request #948 from davydden/bugfix/astyle 
astyle: fix filter command which failed on OSX with python 2.7.10
 2016-05-18 08:35:01 -07:00
Bruno Turcksin
bbbffe7423 Add boost 1.61.0 2016-05-18 08:51:22 -04:00
Denis Davydov
267666cd97 formatting 2016-05-18 08:35:47 +02:00
Todd Gamblin
d592a1655f Merge pull request #961 from xjrc/features/flake8-improvements 
Enhancement Proposal: Exempt '@when' Functions from Style Redefinition Errors
 2016-05-17 17:00:49 -07:00
Todd Gamblin
502420ceff Merge branch 'features/cflags' into develop 
Conflicts:
	lib/spack/spack/cmd/find.py
	var/spack/repos/builtin/packages/ghostscript/package.py
 2016-05-17 16:44:54 -07:00
Denis Davydov
1a187e73ae tbb: add 4.4.4; raise InstallError when building 4.4.3 with GCC6.1 2016-05-17 22:57:32 +02:00
Todd Gamblin
138307dd0c Merge pull request #955 from trws/lua-rework 
complete lua rework
 2016-05-17 13:21:51 -07:00
Veronica G. Vergara Larrea
6c95a5d496 the right flag here is +, the default behavior is controlled in the variant 2016-05-17 14:37:36 -04:00
Adam J. Stewart
f16228d811 Add more install directories 2016-05-17 13:36:38 -05:00
becker33
3d9c8f4fd4 Merge pull request #952 from davydden/package/sed 
sed: add package
 2016-05-17 11:27:57 -07:00
Adam J. Stewart
631cbdbda8 Flake8 2016-05-17 13:22:00 -05:00
Adam J. Stewart
7b9b18f03c Add HPL benchmark package 2016-05-17 13:14:59 -05:00
Veronica G. Vergara Larrea
471950434e add a flag to openmpi to allow users to disable vt support 2016-05-17 13:40:01 -04:00
Todd Gamblin
1774c7a7b3 Merge pull request #958 from trws/golang-new 
Golang new
 2016-05-17 05:56:06 -07:00
Tom Scogland
80c02ad36a flake8-related cleanup 2016-05-17 05:30:35 -07:00
Tom Scogland
af4af94203 rework for gopath and bootstrapping 2016-05-17 05:21:11 -07:00
Joseph Ciurej
761c5c8450 Added line limit exemptions for 'variant' and 'version' directives. 
Updated the 'scotch' package to use oneline 'variant' directives.
 2016-05-16 12:14:57 -07:00
Joseph Ciurej
52c8bedb9c Updated style checking to ignore refinition errors for '@when' fxns. 
Updated the Scotch package to conform to PEP8 standards and to test style checking improvements.
 2016-05-16 11:09:44 -07:00
Todd Gamblin
a74bc9369b Merge pull request #953 from citibeth/150514-NetCDFCXX4 
netcdf-cxx4: Update to latest released version 4.3.0
 2016-05-16 10:58:27 -07:00
Elizabeth Fischer
65ff89a0b0 Placate flake8 demands. 2016-05-16 12:53:24 -04:00
Tom Scogland
62dd040a8f add GOPATH support 
Also fixes flex to depend on bison for its yacc implementation.
 2016-05-16 09:30:37 -07:00
Tom Scogland
9780427940 fixing more flake8 errors that only appear on travis... 2016-05-16 05:37:04 -07:00
Tom Scogland
dacedfcc0e formatting to appease flake8 2016-05-16 05:12:30 -07:00
Tom Scogland
52c359bc77 fix linking issue on ubuntu 
Evidently some readline variants are built with only a dynamic dependency on
ncurses, this addresses that problem for such systems.
 2016-05-16 03:36:31 -07:00
Todd Gamblin
53df9fbb4f Merge pull request #959 from davydden/bugfix/doxygen_ghostscript_graphviz 
Bugfix/doxygen ghostscript graphviz
 2016-05-16 00:12:59 -07:00
Denis Davydov
0fbf70d95d indentation fixes 2016-05-15 23:37:09 +02:00
Denis Davydov
459c647bc9 doxygen: add graphviz variant; enable flex and bison on OSX and they build fine 2016-05-15 19:43:01 +02:00
Tom Scogland
71d9911539 go cleanup, adding hub 2016-05-15 10:23:33 -07:00
Tom Scogland
b7aa47a178 remove debug print 2016-05-15 09:52:09 -07:00
Denis Davydov
a045154b5e graphviz: add missing dependency and fix installation on darwin 2016-05-15 18:34:50 +02:00
Denis Davydov
21d4f3a356 ghostscript: url was changed upstream 2016-05-15 18:33:06 +02:00
Tom Scogland
2bfa4d7e4f removing comments 
also randomly changed unnecessary licence block
 2016-05-14 22:42:14 -07:00
Tom Scogland
577657b3f7 go rework 
This commit includes:
* a new go package that uses gccgo to bootstrap the go toolchain
* env support added to Executable
* a new Go fetch strategy that uses `go get` to fetch a package and all
  of its deps
* A platinum searcher package that leverages the new go package and
  fetch strategy
 2016-05-14 22:35:55 -07:00
Tom Scogland
0816e9554d adding go_compiler providers 2016-05-14 18:06:42 -07:00
Tom Scogland
915f91a619 moving go packages to the new path 2016-05-14 18:06:42 -07:00
Tom Scogland
0c33e8ac48 go and a basic go package 2016-05-14 18:06:41 -07:00
Tom Scogland
f50439b990 appeasing the great vengeful flake8 gods 2016-05-14 17:49:06 -07:00
Tom Scogland
0668b6d7ba changes to appease flake8 for lua-luaposix package 2016-05-14 17:38:32 -07:00
Tom Scogland
21161a60ff changes to appease flake8 (mostly) for lua package 2016-05-14 17:38:13 -07:00
Glenn Johnson
fffc2d2765 Updated turbomole package file. 
This PR updates the turbomole package file but does not introduce any
new funtionality. The updtes are:
- use spack interface for subprocess.PIPE and subprocess.Popen
- clean up based on flake8
- remove some extra whitespace
 2016-05-14 19:33:45 -05:00
Tom Scogland
b5979b13e3 complete lua rework, also module path fix 
This is a complete rework of the lua package, it also allows the
environment modification classes to handle paths that are not separated
by colons, and uses the support for same in TCL modules as well.

The biggest difference is the handling for lua extension packages, which
now have their paths set correctly by the lua parent package, and have
access to both lua and luarocks as installation tools. See the luaposix
package for what should be required for most lua packages after this.
 2016-05-14 16:18:26 -07:00
Denis Davydov
c5a35acd67 sed: add package 2016-05-14 22:29:16 +02:00
Elizabeth Fischer
4bf9b168a5 netcdf-cxx4: Update to latest released version 4.3.0 2016-05-14 16:19:10 -04:00
Todd Gamblin
4a6ec6377d Merge pull request #940 from gzagaris/feature/doxygen-version-1.8.11 
Add doxygen version 1.8.11
 2016-05-13 10:10:23 -07:00
Denis Davydov
8db35ab9a2 openblas: use spack_cc/spack_f77 and add a note on compiler mixing 2016-05-13 17:28:30 +02:00
Denis Davydov
67999d1b1c astyle: fix filter command which failed on OSX with python 2.7.10 2016-05-13 17:13:45 +02:00
George Zagaris
e763eeacdd fix format in doxygen/package.py 2016-05-12 23:25:10 -07:00
Adam J. Stewart
088dce709e Make flake8 happy 2016-05-12 16:33:37 -05:00
Adam J. Stewart
ab41fd6692 Add bertini package 
Also add missing dependency. Flex would not build for me without bison.
It complained about not being able to find `yacc`.
 2016-05-12 16:21:06 -05:00
Adam J. Stewart
03307f91df Fix bug when compiling elk~mpi 2016-05-12 10:27:05 -05:00
Adam J. Stewart
3526d92660 Indentation fix 2016-05-12 10:27:05 -05:00
Adam J. Stewart
d7020434d9 Use new-ish blas_shared_lib and more flake8 fixes 2016-05-12 10:27:04 -05:00
Adam J. Stewart
e2e72b14b2 Use new openmp_flag and mpi attributes 2016-05-12 10:26:10 -05:00
George Zagaris
3ece0e7b76 Add doxygen version 1.8.11 2016-05-12 00:42:22 -07:00
Todd Gamblin
e7ced54369 Correct LLNL LGPL license template for clarity. 2016-05-11 21:22:25 -07:00
Todd Gamblin
14fe0b8ad2 Merge pull request #558 from adamjstewart/features/pgi 
Add Licensed Software Support
 2016-05-11 17:17:47 -07:00
Todd Gamblin
2dc49ee88d Merge pull request #938 from KineticTheory/pkg-moab 
Provide new package: MOAB
 2016-05-11 17:14:05 -07:00
Kelly (KT) Thompson
c5a19b57f7 Clean up formatting. 2016-05-11 16:33:57 -06:00
Gregory Becker
2e1810e3a7 re-merging develop 2016-05-11 15:26:09 -07:00
Kelly (KT) Thompson
8bec127a1d Attempt to fix formatting issues (flake8). 2016-05-11 14:00:44 -06:00
Kelly (KT) Thompson
9482ce1fce Remove some extraneous comments. 2016-05-11 12:39:20 -06:00
Kelly (KT) Thompson
e200a41d3d New package MOAB. 2016-05-11 12:34:33 -06:00
Adam J. Stewart
c043275f1b Final flake8 changes 2016-05-11 11:46:41 -05:00
Adam J. Stewart
5879f8207f Flake8 formatting changes 2016-05-11 11:32:08 -05:00