Commit graph

21640 commits

Author SHA1 Message Date
Manuela Kuhn
cc1285c1e1
py-nilearn: add 0.8.0 (#24583) 2021-06-29 16:04:28 -06:00
Harmen Stoppels
304249604a
Fix prefix-collision detection for projections (#24049)
If two Specs have the same hash (and prefix) but are not equal, Spack
originally had logic to detect this and raise an error (since both
cannot be installed in the same place). Recently this has eroded and
the check no-longer works; moreover, when defining projections (which
may truncate the hash or other distinguishing properties from the
prefix) Spack was also failing to detect collisions (in both of these
cases, Spack would overwrite the old prefix with the new Spec).

This PR maintains a list of all "taken" prefixes: if a hash is not
registered (i.e. recorded as installed in the database) but the prefix
is occupied, that is a collision. This can detect collisions created
by defining projections (specifically when they omit the hash).

The PR does not detect collisions where specs have the same hash
(and prefix) but are not equal.
2021-06-29 14:44:56 -07:00
Manuela Kuhn
1eb2798c43
py-numpy: conflict with gcc11 and switch master to main (#24573)
Fix syntax of conflict between numpy 1.21.0 and gcc11 to that the clingo
concretizer recognizes it.
In addition the upstream master branch was renamed to main.
2021-06-29 15:40:32 -06:00
Jen Herting
e284cd136a
New package: py-pyautogui (#24572)
* [py-pyautogui] created template

* [py-pyautogui] added some unconditional dependencies

* [py-pyautogui] Final cleanup

- added homepage
- added description
- removed fixmes

* [py-pyautogui] added missing dependencies
2021-06-29 13:04:20 -06:00
Christoph Conrads
f5474a2b8b
CGNS: add CMake dependency (#24564) 2021-06-29 12:49:26 -06:00
holrock
c824cad2ea
ruby: add v3.0.1 (#24560) 2021-06-29 12:22:38 -06:00
Vinícius
3fe1ecd807
simgrid: add v3.27, update package (#24513) 2021-06-29 12:07:22 -06:00
Massimiliano Culpo
2b65c53d2b
vermin: show line numbers of violations (#24580)
This commit runs vermin with the --violations option
that shows details of the violations to target requirements.
2021-06-29 19:41:22 +02:00
Jen Herting
327cca7e2e
New package: py-huggingface-hub (#24588)
* [py-huggingface-hub] created template

* [py-huggingface-hub] added dependencies

* [py-huggingface-hub] added version 0.0.8

* [py-huggingface-hub] Final cleanup

- added description
- added homepage
- removed fixmes
2021-06-29 10:49:10 -06:00
Scott Wittenburg
09fa155333
pipelines: build warpx on instance with more memory (#24592) 2021-06-29 18:06:30 +02:00
Chuck Atkins
a7b6149cc0
libzmq: Fix gcc11 build failure (#24563) 2021-06-29 06:33:35 +02:00
Manuela Kuhn
b87d9c29c1
py-scipy: fix missing py-cython dependency (#24548) 2021-06-28 14:07:24 -06:00
Larry Knox
cc20dbf645
Hdf5 cmake (#18937)
* Switch hdf5 package from autotools to cmake.

* Add variant for building with zlib, default to ON.

* Update for format requirements.

* Format change.

* Fix breakage from last merge from develop.
Switch szip to use libaec (unrestricted encryption).
Remove 'static' variant:  static libs will only be installed when
~shared.

* Improve args based on suggestions from pull request.

* Update code URL to github.com
Add/modify 4 depends_on lines to fix running "spack graph --deptype=link hdf5".

* Remove trailing whitespace.

* Remove dependencies added solely to make "spack greph --type=link" work.

* Add new version HDF5 1.8.22.

* Remove unnecessary java_check.

* Fix whitespace for style checks.

* Reverted zlib version dependency to 1.1.2:.
zlib variant removed.
api version default renamed "default".

* Remove blank line.

* Whitespace corrections.

* iRemoved unnecessary 'debug' variant.

* Fix typo in version number in conflict for '+szip'.

* Set default for tools variant to True.
Remove patch functions dependent on 'libtool' file that cmake doesn't
produce.

* Remove line to set ONLY_SHARED_LIBS to true.
Add post_install code to install only one version of tools with shared
linkage and original tool names.

* Remove trailing white space and import of glob package not used.

* Leave BUILD_TESTING set to default which is ON.

* Remove  post_install code to install only one version of tools because
some dependent packages running tests in e4s testing are using
h5diff-shared.  Keep both tools versions for now.

* No longer need to import os.
2021-06-28 13:42:54 -06:00
Michael Kuhn
9a9b5dee2e
glib: add v2.68.3 (#24558) 2021-06-28 12:01:24 -06:00
Robert Underwood
69d69cbc79
GDB: resolve warnings about imp being deprecated (#24448)
This patch has already been accepted into gdb's trunk, we just adopting
it earlier here since it is small and gives a better user experience.
2021-06-28 07:16:28 -06:00
Adam J. Stewart
2284007db9
Use flake8-import-order to enforce PEP-8 compliance (#23947) 2021-06-28 08:03:20 -05:00
Mikael Simberg
744cedc7e9
Add Asio package (#24485) 2021-06-28 12:04:19 +02:00
Olivier Cessenat
e631ccc6f7
New Package: visit-mfem (#22906) 2021-06-28 12:02:41 +02:00
Kai Germaschewski
3cfc1dbc14
pfunit: fix gcc10 +mpi (#23878)
Instead of refusing to build +mpi with gcc10, add what I guess is now
the standard workaround, ie., `-fallow-argument-mismatch`.

Getting this into pfunit's cmake-based but kinda non-standard build  isi
a bit ugly, but you gotta do what you gotta do...
2021-06-28 11:33:23 +02:00
Jianwen
2970c02639
Fix kokkos version number in lammps. (#24436) 2021-06-28 11:23:34 +02:00
Manuela Kuhn
77a98cabfa
llvm: add patch for gcc11 (#24363)
llvm10 was not compiling with gcc due to missing header (see #24270)
2021-06-28 11:18:53 +02:00
Asher Mancinelli
b6aea0d6bf
Update ipopt versions, fix blas/lapack flags (#24447)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2021-06-28 11:14:35 +02:00
Axel Huebl
c06db97970
CUDA: 11.0.3 (11.0 "Update 1") (#24481)
Add CUDA 11.0.3.

This release adds new features such as NVCC flags
`--forward-unknown-to-host-compiler` and
`--forward-unknown-to-host-linker`
2021-06-28 10:53:47 +02:00
miheer vaidya
90dc90e8d1
barvinok: add new package (#24477) 2021-06-28 10:52:45 +02:00
Erik Schnetter
f5ef532bdc
silo: force autoreconf when building share libs (#24388) 2021-06-28 10:44:38 +02:00
lorddavidiii
2bd2ef27a2
ocl-icd, opencl-c-headers and opencl-clhpp: add new versions (#24499) 2021-06-28 02:13:24 -06:00
Scott McMillan
a4a393d097
Update Boost package to support building the latest with the NV compilers (#24541)
Co-authored-by: Scott McMillan <smcmillan@nvidia.com>
2021-06-28 01:19:36 -06:00
Chris White
a6ce000e09
RAJA + Umpire: CUDA Arch fixes (#24531) 2021-06-28 09:09:01 +02:00
Manuela Kuhn
3e65828a7e
pandoc: add 2.11.4 and 2.14.0.3 (#24542) 2021-06-28 08:50:39 +02:00
albestro
6f950bc8ee
cppzmq: add v4.7.1 and "drafts" variant (#24555) 2021-06-28 08:31:04 +02:00
Dylan Simon
963b931309
docs: link projections docs to spec format (#24478) 2021-06-27 08:38:28 +00:00
Anton Kozhevnikov
9bd9cc2c7b
swith profiler on/off (#24547) 2021-06-26 19:25:15 +02:00
Alec Scott
4c149ade7f
accumulo: add v2.0.1 (#24409) 2021-06-26 05:07:13 -06:00
Hadrien G
ecc950d10c
dd4hep: fix hash for version 01-17 (#24425)
Version 1.17 of DD4hep was renamed from "01-17-00" to "01-17", in line 
with the naming conventions of previous releases. Since release archives
contain a subdirectory with the version string in it, this changes the contents
of the tarball ever so slightly, so the SHA-256 checksum must change as well.
2021-06-26 12:34:31 +02:00
Stephen Herbein
9b2e7e6140
flux: add latest versions (core v0.27.0, sched v0.16.0) (#24546) 2021-06-26 04:13:18 -06:00
Cameron Smith
19a973eca0
pumi: add v2.2.6 (#24525) 2021-06-26 11:27:52 +02:00
Manuela Kuhn
ce16503bd3
r-rmarkdown: add 2.9 (#24539) 2021-06-26 11:27:17 +02:00
Manuela Kuhn
ef67ecde60
r-tinytex: add 0.32 (#24538) 2021-06-26 11:27:04 +02:00
Manuela Kuhn
2b1916d845
r-knitr: add 1.33 (#24537) 2021-06-26 11:26:46 +02:00
Manuela Kuhn
469e580034
r-mime: add 0.11 (#24536) 2021-06-26 11:26:25 +02:00
Manuela Kuhn
80585562c9
r-htmltools: add 0.5.1.1 (#24535) 2021-06-26 11:26:06 +02:00
Manuela Kuhn
2aa9e337ee
soci: add 4.0.2 and multiple variants (#24543)
Fix url to find newer versions, add newest version 4.0.2 and add
variants for
- cxxstd: To use a specific c++ standard
- static: Enable or disable build of static libraries
- boost: Boost support
- sqlite: SQLite support
- postgresql: PostgreSQL support
2021-06-26 03:25:47 -06:00
Manuela Kuhn
06a1cf2449
r-highr: add 0.9 (#24534) 2021-06-26 11:25:31 +02:00
Manuela Kuhn
2a9b9c9046
r-xfun: add 0.24 (#24533) 2021-06-26 11:25:09 +02:00
Massimiliano Culpo
b12cee32de
Update archspec to support arm compiler on a64fx (#24524) 2021-06-26 09:18:48 +02:00
Massimiliano Culpo
17f9ddb2b5
flecsi: fixed reported issues in package (#24398)
Prevent the use of "legion network=none" when
flecsi has "backend=legion"
2021-06-26 09:17:53 +02:00
Satish Balay
dbf030f27a
p4est: autoreconf required only for @2.0 (#24544) 2021-06-25 19:02:47 -07:00
Satish Balay
8937102006
p4est: use autoreconf only for @:2.2 (#24528)
This fixes @2.3.2 build breakage with #23824 changes.
2021-06-25 14:04:32 -07:00
snehring
cf0b3632ff
bwa: fixing build errors with gcc10+ (#24475) 2021-06-25 22:12:01 +02:00
Adrien Bernede
6b852bc170
Doc: Note on required changes after merge of reproducible builds (#24347)
* Suggestion of a note for conversion of existing pipelines.

* Wording

* Fix format in .rst note

* Wording
2021-06-25 11:02:26 -06:00