* Fix build issue with PMIx on aarch64
Work around a bug in PMIx that causes build issues on aarch64. Bug was
fixed in PMIx 2.1.1, so the spack package checks both the architecture
and the PMIx version. Workaround is to just not build the PMIx test and
example code.
* Minor code cleanups
Minor corrections to make 'spack flake8' happy.
* Add support for version 2.1.1
* r-matr: Create new package.
* shocklibs: Create new package.
* r-biom-utils: Create new package.
* r-mgraster: Create new package
* py-poster: Create new package.
* py-requests-toolbelt: Create new package.
* perl-libwww-perl: Create new package.
* py-mg-rast-tools: Create new package.
* mg-rast-tools: Fix version constraints for dependencies.
* Change dependency type of py-setuptools.
* openPMD-api
Add a new package for openPMD-api.
openPMD is a meta-data standard (markup, schema) for hierarchical,
scientific particle and mesh based data.
openPMD-api is a library wrapping the underlying backends (HDF5,
ADIOS, ...) into a single, object-aware API.
* Repository: https://github.com/openPMD/openPMD-api
* Project: https://github.com/openPMDhttp://www.openPMD.org
* mpi variant forwarding: fix concretization
+ I am unable to build suite-sparse@5.2.0 with clang@6.0.0. The build fails
with the error:
```
2397 [ 99%] Linking C executable wildtype_demo
2398 make[4]: Leaving directory
`/tmp/kellyt/spack-stage/spack-stage-w0XYhK/SuiteSparse/GraphBLAS/build'
>> 2399 libgraphblas.so.2.0.1: undefined reference to `__fpclassify'
>> 2400 clang-6.0: error: linker command failed with exit code 1 (use -v to
see invocation)
>> 2401 make[4]: *** [wildtype_demo] Error 1
```
+ This error appears because libgraphblas.so requires `-lm`, but that link
dependency is not explicitly listed in GraphBLAS\CMakeLists.txt.
+ A patch file is provided to add this dependency. The patch is only applied
when the compiler is `%clang`.
* ADIOS 1.13.1
ADIOS 1.13.1 fixes several issues with zero-sized block
reading and writing when compression transports are used.
* SZ 1.4.12.3
Add the lastest SZ release used in ADIOS1.
* geopm: Added initial files for package geopm
and py-natsort dependency
* geopm: Updated variants for hwloc and mpi defaults
* geopm: Cleaned up unwanted hyphenation in description.
* geopm: updates according to change request.
* geopm: Updated minor change requests.
Clarification for ruby-ronn dependency included as a TODO.
This requires changes in the current configure and build process
which will be changed in a future version.
* geopm: changed to AutotoolsPackage and fixed hwloc
The changes for hwloc required to add a specific version bc of a
conflicting version of openmpi's hwloc dependency being below
1.99. This works but updates to this package should check if this
restriction is still required. (Thus TODO added)
* geopm: Added link dependencies (thanks for pointing this out).
Also removed empty line below class definition.
* geopm: Fixed depends_on according to package guide.
Removed wrong type 'run' and removed types for numactl, mpi and hwloc
to use default build & link type.
* geopm: Fixed and updated +doc dependencies
new pacakge ruby-ronn (package specified as in ruby-narray package)
Updated second +doc dependency doxygen.
* geopm: Changed args for Autotools specific feature.
Added enable_or_disable and with_or_without instead of if cascade.
Added overhead variant.
Also added missing dependency (default: build&link) for json-c).
