Commit graph

8725 commits

Author SHA1 Message Date
scheibelp
e727f56d89 Features/compiler config consistency (#2999)
* default scope for config command is made consistent with cmd/__init__ default

* dont specify a scope when looking for compilers with a matching spec (since compiler concretization is scope-independent)

* config edit should default to platform-specific file only for compilers

* when duplicate compiler specs are detected, the exception raised now points the user to the files where the duplicates appear

* updated error message to emphasize that a spec is duplicated (since multiple specs can reference the same compiler)

* 'spack compilers' is now also broken down into sections by os and target

* Added tests for new compiler methods
2017-03-10 13:58:48 -08:00
Javier
68f5b9adf8 Adding new package: py-lxml (#3403)
* Adding new package: py-lxml

* Adding missing version
2017-03-10 13:18:17 -06:00
Javier
a1e8644f63 Adding new package: py-elasticsearch (#3398)
* Adding new package: py-elasticsearch

* Adding missing dependency
2017-03-10 12:48:41 -06:00
Javier
0c9ddeafe4 Adding new package: py-keras (#3400)
* Adding new package: py-keras (and dependencies)

* Fixing dependencies
2017-03-10 12:48:22 -06:00
Jon Rood
6066526492 Confining CPPFLAGS=-P to only happen for GCC. (#3404) 2017-03-10 12:48:03 -06:00
Javier
22d7f9da40 Adding new package: py-py4j (#3390)
* Adding new package: py-py4j

* Adding missing depedency
2017-03-10 07:30:28 -06:00
Javier
a7f35b3db6 Adding new package: py-joblib (#3399) 2017-03-10 07:30:01 -06:00
Javier
84db03b5a8 Adding new package: vdt (#3396) 2017-03-10 07:08:41 -06:00
Javier
901f044bbf Adding new package: vc (#3397) 2017-03-10 07:08:17 -06:00
Javier
f0fd0156de Adding new package: py-pathos (and dependencies) (#3391)
* Adding new package: py-pathos (and dependencies)

* Fixing required versions
2017-03-09 17:28:32 -06:00
George Hartzell
611df0bebf New gcc uses C++14 mode, this fixes implicit conversion (#3392)
* New gcc uses C++14 mode, this fixes implicit conversion

The issue is described in depth [here][desc].  C++14 no longer
allows implicit conversion from iostream classes to void*.

This patch comes directly from [PR #6][patch].

[desc]: http://stackoverflow.com/questions/38659115/make-fails-with-error-cannot-convert-stdistream-aka-stdbasic-istreamchar
[patch]: https://github.com/agordon/libgtextutils/pull/6

* mend
2017-03-09 17:27:56 -06:00
Javier
ebd5066d07 Adding new package: py-4suite-xml (#3389) 2017-03-09 13:44:37 -06:00
Gregory Lee
604b75c1f9 created elf virtual package and updated dependent packages (#3317)
* created elf virtual package and updated dependent packages
* added `hide_files` context manager to handle moving files.
2017-03-09 10:36:32 -08:00
Erik Schnetter
2ac343e92e cosmomc: New package CosmoMC (#3292)
* cosmomc: New package CosmoMC

* cosmomc: Improve version numbering scheme

* planck-likelihood: New package

* cosmomc: Pacify flake8

* cosmomc: Code cleanup as requested in the review

* cosmomc: Various updates suggested during review

* cosmomc: Limit compiler versions (as documented in the build instructions)

* cosmomc: Correct flake8 error

* cosmomc: Use `libs` instead of `lapack_libs`

* planck-likelihood: Make makefile output more verbose and readable

* planck-likelilhood: Correct order of libraries when calling linker

* cosmomc: Clean up check for suitable compiler

* planck-likelihood: Use modern mechanism to set environment variables
2017-03-09 08:14:13 -06:00
Brian Van Essen
21e913bac5 Updated the spectrum-mpi package to get the right compiler names when (#3381)
we use spectrum.
2017-03-09 08:11:59 -06:00
Michael Kuhn
44b165461a udunits2: Add build dependency on texinfo (#3383) 2017-03-09 08:11:23 -06:00
Michael Kuhn
c1f8fbed34 ncl: Update to 6.4.0 (#3384) 2017-03-09 08:11:06 -06:00
Javier
e8c8e444e8 Fixing checkum of py-coverage v4.3.4 (#3386) 2017-03-09 08:10:45 -06:00
Massimiliano Culpo
f2c1cbdcd3 patch: configure and build out of source fixes #3387 (#3388) 2017-03-09 07:40:05 -06:00
Brian Van Essen
acf95c92a6 Fixes the Elemental and LBANN packages to conform to the new syntax (#3382)
introduced by PR https://github.com/LLNL/spack/pull/1875
2017-03-08 14:32:26 -06:00
healther
bacb60457d Add package py-guiqwt and dependencies (#3334)
* add package py-guiqwt with dependencies

* fixed url

* fixed url2

* Update package.py

* Update package.py
2017-03-08 10:18:57 -06:00
Massimiliano Culpo
f1d66467e3 package.py: packages dump build dependencies in prefix (#3373)
Modifications:
- `dump_packages` copies build dependencies into `$prefix/.spack`, as well as the link/run dependencies that we already copied there.
- fake installs copy dependency packages into `$prefix/.spack` as well
2017-03-07 07:05:45 -08:00
Massimiliano Culpo
c6d9a45f18 test/environment.py: ported to pytest, added a test on separators (#3375) 2017-03-07 07:03:12 -08:00
AP97
3d9cd72e33 Adding farmhash package from google (#3239)
* Adding farmhash package from google
2017-03-07 07:02:08 -08:00
Aidan San
5d1a16805e Added gemmlowp package (#3240) 2017-03-07 07:00:53 -08:00
Hans Pabst
2ae1ebbbe8 LIBXSMM 1.7.1 (#3371)
* Cleanup list of offered versions (only the latest update release of each minor version is kept: 1.4.4, 1.5.2, 1.6.6, 1.7.1); introduced master revision (via Git). Slightly more selective installation of the documentation; copy README.md and LICENSE files to documentation folder. Removed outdated build options (make_args); generally stay with LIBXSMM's defaults (general purpose build). Introduced one build variant ("debug").

* Incorporated comments of PR #3371 (https://github.com/LLNL/spack/pull/3371).

* Fixed flake8 complaints.

* Made the full list of versions available starting with version 1.4 (there are earlier releases, however those have been released before the Spack specification became available; original spec. also started with 1.4).

* Made DBG and TRACE actually two separate arguments.
2017-03-07 06:58:17 -08:00
Erik Schnetter
55e1550a59 openblas: Run tests only when requested (#3370)
The tests fail on some systems (e.g. Comet at SDSC) that impose limits on the number of processes or threads one can run simultaneously on the head node. Thus the tests should not be run by default.
2017-03-05 12:29:02 -06:00
Barry Smith
00d6cb9a8f Fixes veclibfort which was broken by PR1875 (#3368)
Funded-by: IDEAS
Project: IDEAS/xSDK
Thanks-to: Adam J. Stewart
2017-03-05 07:34:38 -06:00
healther
a7bab8a418 add package py-py-cpuinfo (#3339)
* add package py-py-cpuinfo

* renamed package to py-cpuinfo
2017-03-04 20:12:37 -06:00
Adam J. Stewart
a2d70a45fb Allow find_libraries to accept lists or strings (#3363)
* Allow find_libraries to accept lists or strings

* Convert one more example from list to string
2017-03-04 11:23:57 -06:00
Massimiliano Culpo
192a4b30f0 atlas: added a missing property decorator (#3366) 2017-03-04 10:24:48 -06:00
Denis Davydov
a36ed7fb9b fix blas/lapack usage after PR 1875 (#3365) 2017-03-04 09:42:02 -06:00
serbanmaerean
c3ac86310e ADIOS: change subclassing from Package to AutotoolsPackage (#3230)
* ADIOS: change the invocation of python script that generates test files

The python script ADIOS*/utils/gpp/gpp.py is invoked directly in the
ADIOS*/tests/genarray/Makefile and the name of the python interpreter
can be quite long if it is one built under spack, i.e. longer than the
80 characters allowed by the #! line in bash.  The name of the shbang
line is truncated at 80 characters and bash cannot find the python
interpreter specified.

This fix changes how the script is executed, by invoking it under
python. This way, the shbang line is ignored.

* adios: fixed flake8 errors from previous commit.

* adio: Switch to AutotoolsPackage class from Package class

Switched in order to add support for the ppc64le platform.
2017-03-04 07:53:50 -06:00
Jon Rood
0c1441c3e3 Using fPIC in PERL when using an Intel compiler. (#3355) 2017-03-04 07:50:38 -06:00
Adam J. Stewart
d52ac82f95 Convert gl2ps to CMakePackage (#3360)
* Convert gl2ps to CMakePackage

* Remove unused spec variable
2017-03-04 07:49:57 -06:00
Erik Schnetter
3e4fced7d8 ncurses: Work around an awk bug (#3361) 2017-03-04 07:49:12 -06:00
healther
1e6871add1 correct ipython dependency (#3332)
* correct ipython dependency

* needed to introduce a github download for py-jedi

* corrected dependencies

* restrict appnope dependency to darwin>10.8

* flake8 fix
2017-03-04 07:45:07 -06:00
healther
16c08fb5b3 add package py-junit-xml (#3336)
* add package py-junit-xml

* Update package.py

* flake8 fix
2017-03-04 07:44:36 -06:00
eklee15
c4e7cfe02b Added magma package (#3273)
* Added magma package

* Incorporated Serban's change

* Removed cmake dependency
2017-03-03 21:37:29 -06:00
healther
f34cd4be2b add package py-neo and py-quantities (#3337)
* add package py-neo and py-quantities

* Update package.py

* fixed errors
2017-03-03 21:34:20 -06:00
healther
ec81643906 add package py-pyminifier (#3340) 2017-03-03 21:34:04 -06:00
healther
b6ebfdaa60 add package py-serial (#3341)
* add package py-serial

* fixed setuptools dependency
2017-03-03 21:33:48 -06:00
healther
16e77086e0 add package py-pyfftw (#3342)
* add package py-pyfftw

* Update package.py
2017-03-03 21:33:31 -06:00
Adam J. Stewart
e7b019bf48 Revert "Make libgcc_s relocatable on Macos by adding @rpath to installname" (#3349) 2017-03-03 21:32:44 -06:00
Denis Davydov
003e841016 openblas: fix flags (#3344) 2017-03-03 19:30:35 -06:00
Andrew Holler
1cf8dbd200 features/highwayhash (#3242)
* Adding highwayhash package from Google

* Added the highwayhash package for Tensorflow

* Fixed the numerous flake8 issues

* fixed requested changes

* added conditionals for some installs

* forgot an import

* create install directories before you install anything in them
2017-03-03 19:00:43 -06:00
healther
8333c56ab8 add versions to package py-pandas (#3338) 2017-03-03 16:35:04 -06:00
Adam J. Stewart
678603f3cc scipy build fails when built in parallel (#3275) 2017-03-03 16:31:03 -06:00
Joschka Lingemann
7ef95767ee Fix error raised for multiple virtual packages. (#3306) 2017-03-03 16:30:32 -06:00
Erik Schnetter
37eb59622d opencoarrays: Correct download url, update version (#3322) 2017-03-03 16:29:56 -06:00