Commit graph

18625 commits

Author SHA1 Message Date
Adam J. Stewart
3b6c16ee9f
py-scikit-learn: added v0.23.2 (#17876) 2020-08-09 15:57:07 +02:00
Jordan Ogas
f243291334
charliecloud: added v0.17 (#17855) 2020-08-09 15:55:53 +02:00
Harmen Stoppels
512fa8e460
Fix cpio clang build error (#17963)
undefined reference to '__muloti4', using the proposed fix from
https://bugs.llvm.org/show_bug.cgi?id=16404
2020-08-09 15:45:53 +02:00
ketsubouchi
0642216c31
eospac: added support for fujitsu compiler (#17922) 2020-08-09 15:45:35 +02:00
Cameron Stanavige
7631013975
unifyfs: remove flatcc dependency and add spath (#17913)
FlatCC has been removed from UnifyFS as a dependency on the develop
branch and for future releases.

spath is now an optional dependency for UnifyFS to normalize relative
paths provided by the user.
2020-08-09 15:14:44 +02:00
ketsubouchi
c6ad321838
r-rcppparallel: fix for fujitsu compiler (#17924) 2020-08-09 15:01:19 +02:00
vvolkl
e83f639c13
HEP versions update (#17927)
* [whizard] bug fix for ~openloops

* [lcio] new version

* [gaudi] new version

* [lcio] add delphes dependency for examples
2020-08-09 14:54:26 +02:00
Dr. Christian Tacke
dfd5da85c3
pythia8: added v8302 and maintainer (#17931) 2020-08-09 14:43:47 +02:00
Rémi Lacroix
9979aa28ce
hypre: added v2.19.0 (#17809) 2020-08-09 14:42:52 +02:00
Adam J. Stewart
eda170665f
oneDNN: added v1.6 and v1.6.1 (#17822) 2020-08-09 14:40:05 +02:00
Adam J. Stewart
33ec8cd86a
py-azureml-sdk: add v1.11.0 (and deps) (#17939) 2020-08-09 14:31:28 +02:00
Sinan
f340b81ca8
py-netket: added new package at v2.1.1 (#17515)
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-09 14:05:26 +02:00
Brian Van Essen
1fc02b801e
cub: added v1.9.10, fixed typo in url (#17942) 2020-08-09 13:59:42 +02:00
Glenn Johnson
8eef488e2c
Replace [] with () in description (#17940)
The tcl module for r-dorng will fail to load due to the [] characters in
the description. This happens for Tcl formatted modules loaded by Lmod
at least.

```
module load r-dorng-1.7.1-gcc-9.2.0-wtq7bne
Lmod has detected the following error: .../spack/share/spack/modules/linux-centos7-broadwell/r-dorng-1.7.1-gcc-9.2.0-wtq7bne:(r-dorng-1.7.1-gcc-9.2.0-wtq7bne):
invalid command name "L'Ecuyer"
```

Split text for short and long descriptions.
2020-08-09 13:54:28 +02:00
Adam J. Stewart
a3a571e5c3
PIL: add py-pillow 7.2.0 (#17933) 2020-08-09 13:43:29 +02:00
Sinan
d7ae244a14
llvm: added v10.0.1 (#17950)
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-08-09 13:39:11 +02:00
Adam J. Stewart
09223e5c0b
wcslib: added v7.3 (#17836) 2020-08-09 13:24:48 +02:00
Satish Balay
61735f3847
petsc: added v3.13.2,v3.13.3,v3.13.4 (#17957) 2020-08-09 13:19:59 +02:00
Adam J. Stewart
aa14c9d1d1
libimagequant: added new package at v2.12.6 (#17959) 2020-08-09 13:09:52 +02:00
Satish Balay
2954eb39c9
saws: added v0.1.1 (#17958) 2020-08-09 13:05:21 +02:00
Mark W. Krentel
cef729e39c
mbedtls: fix min cmake version, added v2.16.7 (#17960)
Mbedtls 2.16.x uses target_sources() from cmake >= 3.1.0
2020-08-09 12:52:21 +02:00
Daniel Topa
61cf6d9c8f
cassandra: fixed checksum for v3.11.6 (#17961)
Signed-off-by: Daniel Topa <dantopa@gmail.com>
2020-08-09 12:47:03 +02:00
Glenn Johnson
023a057f20
Add variants to petsc (#17218)
* Add variants to petsc

This PR adds the follolwing variants to the petsc package

- gmp
- jpeg
- libpng
- giflib
- mpfr
- netcdf
- pnetcdf (parallel-netcdf)
- moab
- eigen
- random123
- exodusii
- mstk
- cgns
- memkind
- muparser
- p4est
- saws
- libyaml
- zstd

* Fix flake8 errors

* Additional changes to Petsc recipe

This commit addresses the issues with dependencies that were brought up
in the comments. There are also a few other enhancements.

- the language of the new variant descriptions was changed to be more
  consistent with what was already in the recipe
- an explicit '+mpi' was added to the depends_on('hypre...') directives
- an explicit '+mpi' was added to the depends_on('trilinos...')
  directives
- the run time error checking for '~mpi' was replaced with 'conflicts()'
  directives that will cause the install to fail sooner
- additional variants that were 'parallel only' were added to the '~mpi'
  check

* Set the '~mpi`' conflicts msg to a variable
2020-08-08 11:07:51 -05:00
Sinan
e4a7cb4d60
new package: py-cmake (#17588)
* new package: py_cmake

* sync cmake and py-cmake versions

* new package: py_cmake

* sync cmake and py-cmake versions

* flake8, improve dependency specifics

* replace template stuff with actual values

Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-08-08 11:04:41 -05:00
Sinan
775c14e0c1
package/cmake: add versions 1.18.0 and 1.18.1 (#17945)
* package/cmake: add versions 1.18.0 and 1.18.1

* fix shasums

Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-08-08 00:42:02 -05:00
Adrien Bernede
3978db91dc
Feature/raja chai umpire update (#17665)
* Changing raja, chai, and umpire packages so all will compile with each other.

* Need a CUDA version of CHAI when compiling with raja+cuda+chai

* Updating checks for commit.

* Adding comments explaining why chai+umpire tests were disabled

* Reactivating tests for CHAI and Umpire

* reordering versions

* Unified handling of Cuda Arch

* Adding latest versions

* Unused/Untested: removed

* Aesthetic and test mode in Chai

* Unified handling of Cuda Arch

* Using 'ON' consistently, instead of 'On'

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Fix, suggestion and patch:

Chai depends on RAJA, not the other way.
Apply suggested master-main version mapping.
Add Umpire version 3.0.0 and patch.

Co-authored-by: Robert Blake <blake14@llnl.gov>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-07 17:42:07 -05:00
eugeneswalker
ceed9c4bc0
conduit: dont use cmake >= 3.18 because of FindHDF5 bug (#17937) 2020-08-07 13:50:14 -07:00
Glenn Johnson
1a11449c86
New package - REDItools (#17703)
* New package - REDItools

This PR adds the REDItools package, along with a new package dependency,
py-fisher. This contains a patch generated from the python 2to3 script
as well as some other fixes. I am not sure if the project is ready to
support python-3 yet but I submitted the other patches upstream.

* Update var/spack/repos/builtin/packages/reditools/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-07 14:40:52 -05:00
Adam J. Stewart
11f2d01051
py-inference-schema: add new package (#17912) 2020-08-07 12:09:34 -05:00
Tomoki, Karatsu
c83236d3a4
Fujitsu compiler: Accept alphabet as version. (#17890)
* Fujitsu compiler: Accept alphabet as version.

* Fujitsu copiler: Updated test pattern.
2020-08-07 09:06:22 -05:00
g-mathias
c1efa09928
gromacs: new version 2020.3; variant nosuffix and mkl support (#17908)
* new version 2020.3; new variants nosuffix and fft; version selections for plumed

* fixed too long lines

* fixed whitespaces

* revised fft interface according to @haampie 's suggestions

Co-authored-by: lu64bag3 <gerald.mathias@lrz.de>
2020-08-07 07:03:14 -06:00
darmac
6fc6f1ea9d
activeharmony: add version 4.6.0 (#17867) 2020-08-06 23:51:47 -07:00
Adam J. Stewart
463aaef092 py-rasterio: add v1.1.5 2020-08-06 23:50:02 -07:00
Robert Pavel
07e426ce00
New package: ProfugusMC (#17914)
Added spackage for profugusMC
2020-08-06 23:45:19 -07:00
Mark W. Krentel
7d348268fb
hpctoolkit: fix commit hash for version 2020.08.03 (#17920) 2020-08-06 23:42:52 -07:00
Rao Garimella
cff383802a
Wonton (package): Fix sha 256 sum for version (#17916) 2020-08-06 23:41:48 -07:00
Justin S
7a5c0e0326
stacks (package): add version 2.53 (#17915) 2020-08-06 23:40:41 -07:00
Justin S
0f8ad5be1b
isescan: new package at 1.7.2.1 (#16589)
* isescan: new package at 1.7.2.1

* isescan: update external program paths

* isescan: use spack compiler
2020-08-06 22:26:52 -05:00
Rao Garimella
9a7834949d
New Package Wonton (#17882)
* new package Wonton

* remove the flecsi variant because flecsi-sp does not have a spackage

* fix url, clean up whitespaces

* formatting

* put in explicit else clauses for variants in CMake section because CMake's behavior is system-dependent

Co-authored-by: Rao Garimella <rao@abyzou.lanl.gov>
2020-08-06 13:55:24 -05:00
Adam J. Stewart
051e124533
Bazel: relax Java dependency (#17734)
* Bazel: relax Java dependency

* Flake8 fix
2020-08-06 13:02:02 -04:00
Julius-Plehn
f3ec1d445d
New package: HDFView (#17707)
* HDFView

* adds support for version 3.1.1
2020-08-06 09:02:40 -05:00
Todd Gamblin
9dbe1d7776
bugfix: fix spack -V with releases/latest and shallow clones (#17884)
`spack -V` stopped working when we added the `releases/latest` tag to
track the most recent release. It started just reporting the version,
even on a `develop` checkout. We need to tell it to *only* search for
tags that start with `v`, so that it will ignore `releases/latest`.

`spack -V` also would print out unwanted git eror output on a shallow
clone.

- [x] add `--match 'v*'` to `git describe` arguments
- [x] route error output to `os.devnull`
2020-08-05 17:01:18 -07:00
Robert Mijakovic
aee95fe9a9
GPI-2 new package (#17875)
* update version: intel packages daal, ipp, mkl-dnn, mkl, mpi, parallel-studio, pin, tbb and makes url parameter consistent and always use single quote.

* Fixes a typo with one of the sha256 checksum..

* Adds version entries for new versions of Intel packages.

* Adds hashes for new versions of Intel packages.

* Adds missing hash of Intel compiler.

* Adds the newest version of Intel MPI 2019.8.

* Fixes hash for intel-parallel-studio and intel-tbb.

* Fixes version number of Intel MPI.

* Adds GPI-2 package.

* Fixes flake8 noticed issues.

* Second try to fix flake8 comment

* Fixes some issues adamjstewart noticed.

* Fixes package according to flake8 complains.

* Fixes flake8 issue.

* Renames next version to master and removes master.

* Adds maintainer into gpi-2 and returns master branch for the git
repository.

Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2020-08-05 16:38:23 -05:00
carlabguillen
cc0a1283c4
Variant with fortran for likwid package (#17889)
* Option to build likwid with fortran interface

* Removing white spaces

* Flake8 conform
2020-08-05 16:31:49 -05:00
h-denpo
a5914cecb4
add depends_on('zlib', type='link') (#17887) 2020-08-05 16:24:49 -05:00
darmac
dc321abb72
bcache:add pkg-config to find blkid.h in linux-utils (#17888) 2020-08-05 16:24:14 -05:00
Greg Becker
acfa2ea018
remove hypre variant from mfem and all references to it (#17885) 2020-08-05 09:19:22 -07:00
darmac
afaae70855
nodejs: add version 8.11.4 (#17824)
* nodejs: add version 8.11.4

* node-js: refine configure() for different version
2020-08-05 10:12:14 -05:00
Ronak Buch
e64e600fbb
charmpp: added v6.10.2 (#17886) 2020-08-05 15:03:51 +02:00
Jen Herting
96f5075eb1
[py-smart-open] fixing dependencies (#17640)
* version 1.8.4 requires py-boto at 2.3.2:
* google-cloud-storage only in newer versions
2020-08-04 16:44:30 -07:00