Commit graph

7533 commits

Author SHA1 Message Date
Jim Galarowicz
e68b7d8c63 Update libmonitor to use its new github location, it does not exist where the package file now points to. 2016-08-03 21:08:48 -05:00
Jim Galarowicz
638f779841 Update the version of xerces-c, where the developers remove the old version, so there is no fallback. 2016-08-03 21:04:17 -05:00
Todd Gamblin
be1158f7a3 Merge pull request #1433 from JRWynneIII/error_message_fix
Fix typo for error message when compiler doesn't exist for arch
2016-08-03 14:29:08 -07:00
James Riley Wynne III
f0609699ba Added parens to %'s arguments. Fixes #1432 2016-08-03 17:16:04 -04:00
George Hartzell
43371c31a2 Flake8 cleanup 2016-08-03 16:51:53 -04:00
Todd Gamblin
dce105d16f Merge pull request #1382 from KineticTheory/gktplus3-deps
GTK+3: Provide updates to package dependencies.
2016-08-03 13:45:18 -07:00
George Hartzell
4acf6d76bf Add package for unison
Add package for unison (the file synchronizer).

Needs the ocaml compiler to build.
2016-08-03 16:41:31 -04:00
George Hartzell
a7bfaa3797 Add package for ocaml compiler
Installs the ocaml compiler.
2016-08-03 16:41:31 -04:00
Todd Gamblin
88bb67e279 Merge pull request #1430 from KineticTheory/cray-cc-recursion-fix
Cray: Fix a typo that could cause an infinite recursion when calling env/cc
2016-08-03 13:34:54 -07:00
Kelly (KT) Thompson
46e9d85283 Cray: Fix a typo that could cause an infinite recursion when calling /env/cc.
fixes #1428
2016-08-03 14:15:44 -06:00
Kelly (KT) Thompson
7c46a4c0e4 Provide minor updates after code review
+ Always depend on the gettext package. This simplifies the logic and I no
  longer need to 'import sys'
+ Only apply the patch for the older version of glib.
2016-08-03 13:26:02 -06:00
becker33
3e6ebd577f Merge pull request #1378 from LLNL/bugfix/gh-1324-intel-parallel-studio
Bugfix/gh 1324 intel parallel studio
2016-08-03 10:46:40 -07:00
becker33
353726f08f Merge pull request #1156 from adamjstewart/features/py-meep
Add py-meep package and dependencies

Merging to add the gettext support, will submit a separate issue for the LD_LIBRARY_PATH issue with MPI and py-meep
2016-08-03 10:07:05 -07:00
becker33
7ae163d436 Merge pull request #1361 from epfl-scitas/features/module_token_expansion_in_environment
module : token expansion in environment
2016-08-03 09:49:28 -07:00
becker33
b9195b415a Merge pull request #1420 from epfl-scitas/packages/plumed
plumed : added package
2016-08-03 08:36:31 -07:00
alalazo
2f1c000f62 qa : flake8 issues 2016-08-03 08:26:58 +02:00
Kelly (KT) Thompson
d7d12aa2dc One more formatting change to make flake8 happy. 2016-08-02 19:05:48 -06:00
becker33
48997cffa1 Merge pull request #1233 from hartzell/add-nextflow
First cut package for nextflow, has issues
2016-08-02 11:52:19 -07:00
becker33
4ff4eab476 Merge pull request #1236 from davydden/pkg/arpack-ng_blas
arpack-ng: fix blas/lapack libraries
2016-08-02 11:50:42 -07:00
Denis Davydov
f90692cf81 arpack-ng: fix blas/lapack libraries 2016-08-02 20:27:34 +02:00
becker33
13d9eed85b Merge pull request #1424 from adamjstewart/features/setup_py
spack create should use setup_py() instead of python()
2016-08-02 10:28:14 -07:00
Adam J. Stewart
941acef009 spack create should use setup_py() instead of python() 2016-08-02 12:20:28 -05:00
becker33
b5a117c923 Merge pull request #1366 from hartzell/feature/add-package-for-ack
Add package for ack
2016-08-02 10:11:11 -07:00
becker33
1534a115bd Merge pull request #1421 from hartzell/feature/add-package-for-texlive
Add package for texlive
2016-08-02 10:10:43 -07:00
becker33
a03a35565e Merge pull request #1339 from hartzell/features/add-perl
Add perl package
2016-08-02 10:10:04 -07:00
becker33
326b9838ed Merge pull request #1423 from glennpj/fix_url
Move archive_version setting to if block
2016-08-02 10:05:25 -07:00
George Hartzell
fa70a837d4 Remove accidentally committed cabal-install bits 2016-08-02 13:00:47 -04:00
becker33
91004158c6 Merge pull request #1243 from davydden/pkg/atlas_urls
atlas: fix urls and shared libs
2016-08-02 09:59:05 -07:00
Glenn Johnson
2929fb0a4d Move archive_version setting to if block
The archive_version variable should only get set if versions will be
checked and that is only if there is a list_url in the package file. For
VCS repos setting the variable triggers an error from web.py as it
parses the default_fetcher object.

This should fix #1422.
2016-08-02 11:54:09 -05:00
becker33
3f26bbc8b3 Merge pull request #864 from davydden/kdiff3
kdiff3: initial version of the package
2016-08-02 09:35:00 -07:00
becker33
a3322fab0a Merge pull request #1360 from glennpj/pysetuptoolsdep
Add py-setuptools dependencies to packages
2016-08-02 09:33:40 -07:00
becker33
21158195fb Merge pull request #1354 from paulhopkins/bugfix/preferred_variants_do_not_recognise_-variant
Bugfix/preferred variants do not recognise  -variant
2016-08-02 09:15:06 -07:00
George Hartzell
74a181febc Remove local copy of cpanm installer
This is handled as a resource in the package now.
2016-08-02 12:13:24 -04:00
becker33
9490bd2154 Merge pull request #1373 from hartzell/bug/update-several-r-packages
Update several R packages (r-shiny prereqs)
2016-08-02 09:07:31 -07:00
George Hartzell
4c8672ed1f Add previous versions back into package
Following the advice of @glennpj, added the old versions back into the
packages.

I can install the current packages and the previous packages.
2016-08-02 11:45:16 -04:00
George Hartzell
c77425bb22 Remove useless def unpack
Before I learned that I was stumbling over a real but (#1308), I thought
I needed to arrange for the fetcher to skip the unpack step.

This commit removes the useful `def unpack`.
2016-08-02 11:32:19 -04:00
George Hartzell
a6605d842b Flake8 cleanup. 2016-08-02 11:25:03 -04:00
George Hartzell
f2f5f6c279 Touch up variant comment 2016-08-02 11:18:50 -04:00
George Hartzell
c994565c62 Use "resource" machinery to manage cpanm tarball
Use the resource machinery to fetch/cache/unpack/... the App::cpanminus
tarball.

- this hardcodes the version, I can't figure out how to use a variant to
  hold/set the value and access it in the resource().
- change up the install to use the `with working_dir()` meme.
2016-08-02 11:16:46 -04:00
George Hartzell
1b9becc541 Add the std spack header to perl/package.py
Stole the example header from antlr/package.py, included it at the top
of perl/package.py.
2016-08-02 11:16:46 -04:00
George Hartzell
08ff7b65af Make running perl's tests conditional
Make running perl's tests conditional, one must now specify the
`--run-tests` flag to the `spack install` command in order to run the
tests.

On one system (8 core, 16GB Digital Ocean Droplet), installing without
tests takes 3 minutes, with tests takes 16 minutes.
2016-08-02 11:16:46 -04:00
George Hartzell
4d72e0fb9d Make the cpanm version a variant
Rather than hard-coding the verison of `cpanm` that's [optionally]
installed into the core, make it a variant with a default value of
'1.7042'.

Also discovered that `prefix + 'bin'` is the same as `prefix.bin`, so
embetter that bit of code.
2016-08-02 11:16:46 -04:00
George Hartzell
a5a4525bed Add perl package
Add perl package, based on [work by
justintoo](https://github.com/LLNL/spack/pull/105).  He had too many
things pulled into that pull request, this just adds a perl package.

Support the current releases on the past three minor branches.

Run perl's tests before installing.

Install cpanm into the core (makes building on top of this perl *much*
simpler).  Controlled by a variant.
2016-08-02 11:16:46 -04:00
George Hartzell
949621eb7f Add package for texlive 2016-08-02 11:15:42 -04:00
George Hartzell
857a03c127 Ack should depends_on('perl')
Add a depends_on('perl') and rewrite the script's `#!` line to refer to
that Perl's `perl` executable.
2016-08-02 11:11:05 -04:00
George Hartzell
114da813a3 Remove unnecessary imports.
Now that it's sporting a cleaner install method, these imports are
unnecessary.
2016-08-02 11:11:05 -04:00
George Hartzell
bf467c5df3 Remove override of unpack(self)
I cargo culted that from my *nextflow* package.  I [thought I] needed it
to work around Spack trying to use tar to unpack something that was
neither a tar ball nor unpackable.

This package works fine without it.  In retrospect, the error that I was
seeing in the *nextflow* package was probably this problem #1308.
2016-08-02 11:11:05 -04:00
George Hartzell
6c3623422f Use cleaner mech to install script
Use @adamjstewart's nicer bit of python code in the
install method.
2016-08-02 11:11:05 -04:00
George Hartzell
63121a0c49 Add package for ack
Add a package for [ack](http://beyondgrep.com/install/).  Simply install
the fatpacked script.

It uses '#!/usr/bin/env perl' and it very much not choosy about what
perl it needs.  For now just trust that there's one available, perhaps
someday we can/should uncomment the depends_on('perl').

Follows the methodolgy I used in nextflow.  Has the same
uninstall/install problem that nextflow has, there is an issue in
progress for that: https://github.com/LLNL/spack/issues/1308.

Tested on CentOS7.
2016-08-02 11:11:05 -04:00
George Hartzell
12d1263980 Update several R packages (r-shiny prereqs)
r-jsonlite 0.0.21 -> 1.0
r-mime     0.4    -> 0.5
rcpp       0.12.5 -> 0.12.6

CRAN is funny.  The older versions of these packages are still available
in package specific directories but the current version is not there, so
I don't see any way to make the older versions work.
2016-08-02 11:10:41 -04:00