Commit graph

16156 commits

Author SHA1 Message Date
Massimiliano Culpo
9ceec7e219 Harden shell detection when procfs is available (#13950) 2019-12-16 14:51:58 -08:00
Hadrien G
e366d5b559 New ACTS version (#14180) 2019-12-16 10:25:37 -06:00
darmac
9ece934084 add new package : py-s3cmd (#14166)
* add new package : py-s3cmd

* add some depends and move depends behind the version
2019-12-16 10:20:15 -06:00
Massimiliano Culpo
f80491826b
Travis exits at the first failing test, pin codecov at v4.5.4 (#14179)
Before this commit we used to run the entire unit test suite
in the presence of a failure. Since we currently rely a lot
on the state of the filesystem etc. the end report was most
of the time showing spurious failures that were a consequence
of the first failing test.

This PR makes unit tests exit at the first failing test

Also, pin codecov at v4.5.4 (last one supporting Python 2.6)
2019-12-16 10:56:54 +01:00
Greg Becker
9f1d728646 match bootstrapped compiler to architecture (#14059) 2019-12-14 16:42:46 -08:00
Peter Scheibel
60580f5871 package hash: gracefully handle @when with non-string args (#14153)
* when constructing package hash, default to including a method in the content hash if we can't determine whether it would be included by examining the AST
* add a test for updated content-hash calculations
* refactor content hash tests to eliminate repeated lines
2019-12-14 14:31:39 -08:00
Mark W. Krentel
410bce91d4 hpctoolkit: update git branch for version 'gpu' (#14155) 2019-12-14 12:37:04 -06:00
Brian Van Essen
34128ca70d Updated Hydrogen version to 1.3.2 (#14156) 2019-12-14 12:36:33 -06:00
darmac
5e9fb6b309 add new package : memcached (#14162) 2019-12-14 12:28:51 -06:00
darmac
986df8c233 add new package : jstorm (#14163) 2019-12-14 12:27:39 -06:00
darmac
0f0e2c4397 add new package : logstash (#14164) 2019-12-14 12:26:43 -06:00
darmac
72390ecd62 add new package : pig (#14165) 2019-12-14 12:26:14 -06:00
darmac
43712b4982 add new package : rabbitmq (#14167) 2019-12-14 12:21:09 -06:00
darmac
2f4521d418 add new package : zookeeper (#14170) 2019-12-14 12:19:40 -06:00
darmac
f40520c6bf add new package : bind9 (#14172) 2019-12-14 12:16:39 -06:00
darmac
33028c8955 add new package : rt-tests (#14174) 2019-12-14 12:12:01 -06:00
Andras Wacha
f757b6f4e5 Patch: explicitly use xbitmaps include dir in the automake package (#14128)
* Patch: explicitly use xbitmaps include dir in the automake package

* Added dependencies required for autoreconf: libtool, autoconf, automake, m4
2019-12-14 10:54:27 -06:00
darmac
7e668b1153 add new package : cassandra (#14144)
* add new package : cassandra

* make stable version as a preferred one
2019-12-13 22:21:18 -06:00
Adam J. Stewart
43e9fe95ea
Add latest version of jq (#14134) 2019-12-13 15:44:09 -06:00
Matthieu Dorier
f589f69a6c FIX: Making berkeley-db package fetch from correct links (#14147)
* making berkeley-db package fetch from oracle website

* removed blank space

* making flake8 happy

* fixing typos and order of versions
2019-12-13 15:19:59 -06:00
Dan Lipsa
0167ceb104 Add shared option to ParaView. (#14131)
* Add shared option to ParaView.

* Use append for one attribute
2019-12-13 15:19:31 -06:00
Adam J. Stewart
83baf35246
Add new aws-parallelcluster package (#14139) 2019-12-13 12:55:15 -06:00
Adam J. Stewart
268914e7a2
Add latest version of py-tabulate (#14138) 2019-12-13 12:54:59 -06:00
Adam J. Stewart
988b377382
Add latest version of py-ipaddress (#14137) 2019-12-13 12:54:42 -06:00
Adam J. Stewart
da501564cb
Add latest version of py-botocore (#14136) 2019-12-13 12:54:23 -06:00
Adam J. Stewart
5db615feca
Add latest version of py-boto3 (#14135) 2019-12-13 12:54:05 -06:00
Adam J. Stewart
2e19a9343b
Add latest version of oniguruma (#14133) 2019-12-13 12:53:44 -06:00
Seth R. Johnson
c659408368 Update CMake to version 3.16 (#14152) 2019-12-13 12:53:19 -06:00
noguchi-k
3e5c926a95 gmodel: fix error (#14140) 2019-12-13 12:53:03 -06:00
darmac
481a920fe8 add new package : activemq (#14142) 2019-12-13 12:51:59 -06:00
darmac
3344bb0a96 add new package : alluxio (#14143) 2019-12-13 12:51:30 -06:00
Scott Wittenburg
2520806df2 docker: add file, adjust locale, and use python3 for ubuntu (#13508)
* docker: add missing module to ubuntu images
* docker: fix issue with missing locale
* docker: one package per line + rm python2 support
* docker: ubuntu image also needs 'file' for buildcache creation
2019-12-13 10:22:20 -08:00
Zack Galbreath
0f5724e908 Split out CDash options to a separate help document (#13704)
Prevent `spack help install` from getting too cluttered with CDash-specific documentation.
2019-12-13 10:15:22 -08:00
Peter Josef Scheibel
8c2305e867 Patch fetching: remove unnecessary argument 2019-12-13 08:38:50 +01:00
Peter Josef Scheibel
8199f22e7c Mirrors: skip attempts to fetch BundlePackages
BundlePackages use a noop fetch strategy. The mirror logic was assuming
that the fetcher had a resource to cach after performing a fetch. This adds
a special check to skip caching if the stage is associated with a
BundleFetchStrategy. Note that this should allow caching resources
associated with BundlePackages.
2019-12-13 08:38:50 +01:00
Peter Josef Scheibel
b62ba7609d Mirrors: avoid re-downloading patches
When updating a mirror, Spack was re-retrieving all patches (since the
fetch logic for patches is separate). This updates the patch logic to
allow the mirror logic to avoid this.
2019-12-13 08:38:50 +01:00
Peter Josef Scheibel
754dd6eb1f Mirrors: perform checksum of fetched sources
Since cache_mirror does the fetch itself, it also needs to do the
checksum itself if it wants to verify that the source stored in the
mirror is valid. Note that this isn't strictly required because fetching
(including from mirrors) always separately verifies the checksum.
2019-12-13 08:38:50 +01:00
Peter Josef Scheibel
b2cc50aa6a Mirrors: fix cosmetic symlink targets
The targets for the cosmetic paths in mirrrors were being calculated
incorrectly as of fb3a3ba: the symlinks used relative paths as targets,
and the relative path was computed relative to the wrong directory.
2019-12-13 08:38:50 +01:00
Peter Josef Scheibel
b64f458102 Allow repeated invocations of 'mirror create'
When creating a cosmetic symlink for a resource in a mirror, remove
it if it already exists. The symlink is removed in case the logic to
create the symlink has changed.
2019-12-13 08:38:50 +01:00
darmac
03203a86b4 fix libev url (#14066)
* fix libev url

* remove list_url in libev
2019-12-12 22:58:33 -06:00
Sinan
0d7b9de3be compile python with sqlite loadable extensions (#14132) 2019-12-12 22:58:16 -06:00
t-karatsu
ddfca1b2f2 cmake: Fix checksum of 4075.patch (#14125) 2019-12-12 13:57:23 -05:00
iarspider
d98b433a3c Fix py-jupyter-client version ranges (#14126) 2019-12-12 11:31:47 -06:00
Justin S
c2f45fb4da charmpp: fix build failing from broken hardlink (#13922)
* charmpp: fix build failing from broken hardlink

* charmpp: use setup_dependent_build_environment
2019-12-11 20:20:05 -06:00
Glenn Johnson
fec3a852c7 Fix replacement of embedded 'gcc' in augustus (#14116)
PR #13975 added makefile filtering to replace gcc/g++ with the spack
compiler. This conflicts with other filtering that is done in the package to
add paths for dependencies. The text of the dependency paths might
have 'gcc' in the path name, depending on the install_path_scheme, and
that was being replaced by the new compiler filters. That would mangle
the path to the dependecy resulting in a failed build.

This PR moves the compiler filters to be before the other filters to
make sure that the compiler is set before the dependency paths.
2019-12-11 20:19:27 -06:00
iarspider
695c09a8b7 Add missing dependency on setuptools to py-subprocess32 (#14074)
* Add missing dependency on setuptools to py-subprocess32

* Update package.py

* Update var/spack/repos/builtin/packages/py-subprocess32/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py
2019-12-11 20:18:39 -06:00
Brian Van Essen
53f73e280a Bugfix for bad hydrogen tags (#14119) 2019-12-11 20:17:10 -06:00
Adam J. Stewart
1f9d37c346
TensorFlow: must specify CUDA compute capabilities (#14118)
* TensorFlow: must specify CUDA compute capabilities

* Correctly restrict cuda_arch version ranges
2019-12-11 20:16:52 -06:00
Adam J. Stewart
7ec1917d9b
Add try-except for Python installation (#14122) 2019-12-11 20:16:33 -06:00
Adam J. Stewart
47615566ea
Fix JDK 8 download URLs (#14120) 2019-12-11 20:16:16 -06:00