Commit graph

14919 commits

Author SHA1 Message Date
Adam J. Stewart
17cd359ddf
py-traitsui: add new package (#15744) 2020-03-29 19:38:02 -05:00
Adam J. Stewart
f1aab835fe
CitcomS: add maintainer, master version, python dep (#15742) 2020-03-29 17:23:21 -05:00
Adam J. Stewart
4287d2290c
py-pyface: add new package (#15743) 2020-03-29 17:22:24 -05:00
Adam J. Stewart
df4e89770a
py-traits: add new package (#15741) 2020-03-29 16:34:18 -05:00
Jean-Paul Pelteret
4b3b023284
deal.II: Update dependencies and fix target for vectorisation (#15731)
* Update ADOL-C homepage url

* Update SymEngine to v0.6

* deal.II: Add code to add target vectorisation flags
2020-03-29 10:56:15 -05:00
Adam J. Stewart
c3d0973c3e
motif: add pkgconfig dependency (#15736) 2020-03-29 10:55:57 -05:00
Patrick Gartung
cbcac72254
Buildcache keys command speed up (#15727)
* Limit the spidering to depth=0 for keys

* depth=0 is default argument
2020-03-28 16:49:34 -05:00
Andrew W Elble
beaa4fbe3c
New package: gdrcopy (#15732)
* New package: gdrcopy

provides the userspace libraries for gdrcopy.

* Update var/spack/repos/builtin/packages/gdrcopy/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-03-28 16:44:23 -05:00
Daniele Cesarini
ddccad14c9
XIOS: add new versions (#15728)
* XIOS: add new versions

Patch has been removed because it was not applied to any previously
existing versions and it actually breaks the new versions added by this
PR.

* Sort versions from newest to oldest
2020-03-28 15:49:21 -05:00
Tom Scogland
a3e1b2bd58
llvm: libomptarget support (#14060)
This allows the llvm build to support:

* clang cuda
* libomptarget for:
  * current host
  * cuda
* bitcode compilation of libomptarget device runtime for inlining by 
  bootstrapping libomptarget
* split dwarf information support as an option for debug builds, if you need a
  debug build, for the love of all that's good in the universe use this flag
* adds necessary dependencies for shared library builds and libomp and
  libomp target to build correctly
* new version of z3 to make it sufficient to build recent llvm

The actual change is much smaller than the diff, this is because it's been formatted with black.  I realize this kinda sucks right now, but I'm hoping it will make future updates here less painful.
2020-03-28 13:20:06 -07:00
Kai Germaschewski
f3c2ebbfb8
fix gcc@8.4.0 build (#15729)
the gcc package.py includes patches for a sanitizer related bug that look
like they've been fixed in gcc 8.4.0, which caused `spack install` to fail.

This PR excludes patching gcc >= 8.4.0 and < 9.0.0.
2020-03-28 13:06:17 -05:00
Amjad Kotobi
c1d111af74
Add package swiftclient (#15700)
* Add package swiftclient

* Fix on url

* Package name changed to py-python-swiftclient and changes on dependencies
2020-03-28 12:14:05 -05:00
iarspider
6969526e0f
py-statsmodels: update to 0.102 and fix dependencies (#15708)
* py-statsmodels: update to 0.102 and fix dependencies

* Update var/spack/repos/builtin/packages/py-statsmodels/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-03-28 12:13:47 -05:00
Daryl W. Grunau
8beeeeb74c
new package ddd (#15717)
* new package ddd

* mitigate build/installs on case-insensitive filesystems

* add missing variants

* flake8 fixes

* flake8: E124 closing bracket does not match visual indentation

Co-authored-by: Daryl W. Grunau <dwg@lanl.gov>
2020-03-28 12:12:49 -05:00
iarspider
33f424ff1d
Update URL for new py2neo versions (#15324)
* Update URL for new py2neo versions

* Use pypi for py-py2neo

* Add version 4.3.0

* Update py2neo dependencies

* Apply suggestions from code review

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-03-28 09:15:28 -05:00
Christoph Junghans
0b1c0bdd6e
xsbench: fix build of v19 (#15715)
* xsbench: fix build of v19

* Flake8
2020-03-28 09:11:37 -05:00
iarspider
27e4a4750d
Hack to select iconv implementation - libiconv vs. libc iconv (#15437)
(re-do of #15213 due to changes in gnupg recipe)
2020-03-28 09:10:31 -05:00
Veselin Dobrev
9f7255da71
mesa: re-introduce the libs property (#15716)
They were originally added in #8904 and later removed (why?) in #10482.
2020-03-28 11:30:05 +01:00
Adam J. Stewart
db67b78fb9
py-petastorm: add new package (#15722) 2020-03-28 00:30:50 -05:00
Adam J. Stewart
33b19e7bf0
py-diskcache: add new package (#15721) 2020-03-27 22:20:15 -05:00
Greg Sjaardema
6e49f5f0e5
netcdf-c: remove maxdims and maxvars variant (#15524)
* NETCDF: Remove maxdims maxvars variant

I'm not sure of the correct protocol to do this, so decided to make a stab and hopefully it works or I'm told the correct way...

The `maxdims` and `maxvars` variants for the NetCDF package were, to the best of my knowledge, only ever used for the Exodus library in the SEACAS package.  In versions of NetCDF prior to 4.4.0, Exodus required that the `NC_MAX_DIMS` and `NC_MAX_VARS` be increased over the default values.  This requirement was removed in 4.4.0 and later.

I do not know of any way to make a variant depend on the version and since the `maxdims` and `maxvars` variants are integer values and not boolean, then every build of NetCDF will have  these variants.  Typically `maxdims=1024 maxvars=8192` and the build will patch the `netcdf.h` include file for every build even though it is (almost) never needed. 

The SEACAS package has a NetCDF version requirement of >4.6.2, so it no longer specifies the `maxdims` or `maxvars` variant and I could find no other package in spack that uses this variant either, so removal should not break anything *in* spack.  However, there is no guarantee that some other external package doesn't use the variant, so I'm not sure of the correct way to remove the variant.  

For this PR, I simply removed the variants.  If there is a way to specify use of the variant tied to a specific version, I couldn't find it anywhere...

* Address review comment

Removed `is_integral` and `import numbers` since `is_integral` was only place it was used.

* Add blank line for flake8
2020-03-27 21:55:04 -05:00
Sinan
f6f5604927
Package/qgis add versions 3.10.4 3.12.1 (#15720)
* add latest versions

* order dependencies alphabetically

* flake8

Co-authored-by: Sinan81 <Sinan81@github>
2020-03-27 21:36:33 -05:00
Andrew W Elble
aed516ad56
TensorFlow: let install take care of the headers (#15718)
* TensorFlow: let install take care of the headers

we don't need to manually install them.

* no longer need to import glob
2020-03-27 21:35:13 -05:00
Sinan
829bfb5788
magma now extends CudaPackage class, taking care of the gcc conflicts (#14471)
* magma now extends CudaPackage class, taking care of the gcc conflicts

* enforce +cuda; thus cuda is dependency via CudaPackage class

* add conflict

* use cuda_arch to set GPU_TARGET build option

* get rid of unnecessary constraint

* flake8

* impose cuda version dependency found empirically

* add variant description

* add conflict

Co-authored-by: Sinan81 <Sinan81@github>
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-03-27 15:28:54 -05:00
Benjamin Fovet
d909c6d89d
Add new package CMinpack (#15606)
* Add new package CMinpack

* Add link to CMinpack PR#21
2020-03-27 14:29:49 -05:00
JeromeDuboisPro
2b915dc517
Adding mesa-glu 9.0.1 (2019) (#15705)
Adding mesa-glu 9.0.1 (2019)
2020-03-27 14:28:51 -05:00
iarspider
cd82228c78
py-multiprocess: add new version (0.70.9) and dependencies (#15710)
* py-multiprocess: add new version (0.70.9) and dependencies

* Add new version of py-dill

* Update package.py

* Update package.py
2020-03-27 12:57:29 -05:00
Daryl W. Grunau
f40080934e
New package lesstif (#15703)
* new package lesstif

* incorporate more of the Homebrew build recipe

Co-authored-by: Daryl W. Grunau <dwg@lanl.gov>
2020-03-27 12:57:04 -05:00
Adam J. Stewart
b6d2abf885
py-grpcio: add new version (#15713) 2020-03-27 11:43:16 -05:00
Sinan
b397af5d9c
Package/qscintilla: python bindings via extend path (#15599)
* build python bindings within qscintilla package via extend_path trick

* add todo

* reflect new setup also in py-pyqt4 package

* get rid of qscintilla dependency

* also tweak qgis for the new setup

* generalize the building of python bindings

* generalize building of pythong bindings to all qt versions

* add qsci_api variant

* add qsci_variant for pyqt4 package as well; add comment

* pyqt dependency should build with +qsci_api variant enabled

* fix bugs

* improve style

* reflect recent changes

* flake8

* improve style

* more flake8

* more flake8

Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-03-27 11:42:58 -05:00
Nichols A. Romero
c5e74fef32
QMCPACK Update March 2020 - Part 2 (#15616)
* Add some comments explaining the choice of flag_handler.

* Fix QMCPACK install method.

* Add support for ppconvert. This requires a custom build method.

* Fix QMCPACK setup_run_environment. Nexus should be properly supported now.

* Cleaner way to check for intel-mkl in spec.

* Remove build method and use build_targets property instead.

* Additional fixed for install method. Effectively restoring the original install method.

* Add the missing backslash to fix directory names.

* Update var/spack/repos/builtin/packages/qmcpack/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/qmcpack/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/qmcpack/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Omit these conflicts on mkl variants for now, will hopefully be supportted with new concretizer in a couple of months.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-03-27 11:38:28 -05:00
darmac
d7454baa55
util-linux: add libmount variant (#15631) 2020-03-27 11:35:08 -05:00
darmac
c3e41444ff
Add new package: zfs (#15632) 2020-03-27 11:34:03 -05:00
Hector
fb5afb4cb4
add source-highlight variant to gdb (#15634) 2020-03-27 11:33:33 -05:00
noguchi-k
0ca5ad237a
denovogear: fixed comparison error (#15638) 2020-03-27 11:29:30 -05:00
iarspider
953bd04cb3
Bison: add version 3.3.2 (#15707) 2020-03-27 11:21:42 -05:00
iarspider
0f8148b258
py-attrs: add version 19.3.0 (#15709) 2020-03-27 11:16:40 -05:00
Dr. Christian Tacke
16f104aafe
intel-tbb: new download url, fix sha256 (#15675)
intel moved the repository around.
github changes the prefix inside the tar according to the
repository name.

So all sha256 have changed!

I verified that the tar contents for 2019.4 did not change
except for the prefix.
2020-03-27 10:59:05 -05:00
Amjad Kotobi
6e82761d4e
New package Anaconda2 (#15676) 2020-03-27 10:58:50 -05:00
Andrew W Elble
108a0c99f1
TensorFlow: Make horovod compilation work (#15692)
* TensorFlow: Clean up/simplify the installation, make sure the headers are
installed so that horovod can find them successfully. Fix the 2.0.* builds.

* Backport of 837c8b6b upstream
"Remove contrib cloud bigtable and storage ops/kernels."
Allows 2.0.* releases to build with '--config=nogcp'

* comment regarding tensorflow issue #31187

Co-authored-by: Andrew W Elble <aweits@skl-a-00.rc.rit.edu>
2020-03-27 10:51:04 -05:00
Toyohisa Kameyama
7df7b65cec
ppOpen-AT: New package (#15649)
* ppOpen-AT: New package

* use install instead of install-after.

* use install_tree.

* forget remove mkdir.
2020-03-27 08:16:48 -05:00
Brian Homerding
420b5dd4b9
MpiP: adding variant to build shared libraries (#10410) 2020-03-27 12:07:57 +01:00
darmac
e1238bae90
dpdk: added new package at v20.02 (#15635) 2020-03-27 10:21:16 +01:00
darmac
6a33c269bd
sshpass: added new package (#15704) 2020-03-27 08:44:41 +01:00
iarspider
97c3addad3
cppgsl: added v2.1.0 (#15696)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-03-27 08:42:50 +01:00
Fabian Brandt
dcc4aabce1
New package libtlx (#15650)
* New package libtlx

* Replaced dash characters with ascii dash
2020-03-26 22:55:27 -05:00
Michael Kuhn
5f06e50902
meson: Add 0.53.2 and fix setuptools dependency (#15674)
py-setuptools is actually required for running meson.
2020-03-26 22:50:20 -05:00
Hector
0ebed5a618
fix gdb installation (#15679)
* fix gdb installation

* add reference url
2020-03-26 22:45:47 -05:00
Sinan
2828815a49
add new versions (#15688)
Co-authored-by: Sinan81 <Sinan81@github>
2020-03-26 22:41:57 -05:00
noguchi-k
5cb4db8570
gtkorvo-dill: fix argument type of clear_cache (#15689) 2020-03-26 22:41:25 -05:00