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4572 commits

Author SHA1 Message Date
Christoph Junghans
5f592fb911 votca-xtp: added url (#5772) 2017-10-17 01:39:02 -07:00
Christoph Junghans
244c7af864 flang: clean up (#5766) 2017-10-17 01:38:41 -07:00
Christoph Junghans
1a12e6022b liquo: added 1.3 and develop (#5781) 2017-10-17 01:36:54 -07:00
Douglas Duckworth
f0da8251b3 singularity 2.4 added (#5782) 2017-10-17 01:28:19 -07:00
Todd Gamblin
d14816cbaf Spack tests no longer clutter var/spack/stage 
- Tests use a session-scoped mock stage directory so as not to interfere
  with the real install.

- Every test is forced to clean up after itself with an additional check.
  We now automatically assert that no new files have been added to
  `spack.stage_path` during each test.

  - This means that tests that fail installs now need to clean up their
    stages, but in all other cases the check is useful.
 2017-10-17 01:26:31 -07:00
Jon Rood
890c5ad329 Forcing Paraview to avoid using git describe to determine its own version number (#5783) 
* Forcing Paraview to avoid using git describe to determine its own version number.

* Shortening references to spec in paraview.
 2017-10-16 15:32:23 -06:00
Aaron Fisher
639d9c305a Updated the rc tag and version. (#5761) 2017-10-16 11:26:26 -07:00
Christoph Junghans
89344ebd44 portage: fixes + added v1.1.* (#5706) 2017-10-16 09:59:41 -07:00
Michael F. Herbst
d0cf3db46e armadillo: use libs to provide arpack and superlu libraries (#5777) 2017-10-16 12:57:01 +02:00
Denis Davydov
f6c16de6de petsc: a temporary workaround for concretizer bug in all packages which depend on SLEPc (#5755) 2017-10-16 00:53:55 -07:00
Johann Klähn
6c67de48e8 Update llvm to version 5.0.0 (#5773) 2017-10-15 13:04:40 -06:00
Michael F. Herbst
5656554922 Add krims and lazyten (#5771) 
* Add krims to spack

* Add lazyten to spack

* Add description for lazyten

* Changes suggested by @davydden and @junghans
 2017-10-15 11:45:11 -06:00
Denis Davydov
a16ec21fbe boost: remove preferred 1.63 (#5770) 
1.64 had issues serialization (make_array and others) when built with
+mpi+python. It appears that those issues are fixed in 1.65.1
so we can remove preferred tag from 1.63.
 2017-10-14 16:50:28 -06:00
Denis Davydov
cfd823c3f7 intel-tbb: add 2018.1 (#5769) 2017-10-14 16:40:23 -06:00
Denis Davydov
dcb888d477 gsl: add 2.4 (#5768) 2017-10-14 16:39:43 -06:00
Denis Davydov
8f52295dd8 oce: add 0.18.2 (#5767) 2017-10-14 16:39:21 -06:00
Christoph Junghans
31115af128 boost: call_once_variadic.patch is already part of 1.56.0 (#5341) 2017-10-14 12:53:25 -06:00
Christoph Junghans
a685372636 Revert "Use cflags instead of the args variable (#5756)" (#5765) 
This reverts commit 6c3184820a.
 2017-10-14 13:55:02 +02:00
Satish Balay
0168025c1c superlu_dist: update to latest version 5.2.1 (#5762) 
The interface to +int64 changed from  -D_LONGINT to XSDK_INDEX_SIZE=64. This change
uses the appropriate interface for for the given version
 2017-10-13 21:22:44 -06:00
David Gardner
f885c89fdc Update Sundials package (#5696) 
* initial update of sundials package

* fix bugs in initial sundials update

* add xsdk cmake setup, fix generic math option, add cuda/raja Makefiles to install fixes

* Fix lapack install bug, add new conflicts, clean up formatting

* Address pull requeset comments and make fomatting style consistent

Remove blas variant as blas is only needed when used by an external
linear solver. Set related CMake blas variables as needed depending
enabled external linear solvers.

Add minimum required CMake version.

Additional conflicts and dependencies for external libraries based
on mpi, indextype, and precision.

Fix SuperLU_MT logic to check which threading type SuperLU_MT was
configured with.

Add maintaiers.

Change Sundials solver options to use an array of values.

Consistently use % for formatting.

* change triple-single quotes to single quotes

* Change indextype option to a single int64 option
 2017-10-13 21:13:10 -06:00
Yifan Zhu
4d3424a5d4 r-preprocesscore: added versioned dependency on r (#5671) 2017-10-13 18:50:26 -06:00
Yifan Zhu
e6109381fc r-rmpi: added list_url and updated md5 (#5698) 2017-10-13 18:35:06 -06:00
Yifan Zhu
ad8b9522d6 r-edger: added versioned dependency on r (#5669) 2017-10-13 18:32:43 -06:00
Yifan Zhu
8c2fe52f8e r-s4vectors: added versioned dependency on r (#5672) 2017-10-13 18:32:17 -06:00
Denis Davydov
c13e13a52b likwid: update versions (#5757) 2017-10-13 16:08:49 -06:00
Yifan Zhu
2c73c9fb50 r-xvector: added versioned dependency on r (#5731) 2017-10-13 16:01:18 -06:00
Satish Balay
6fcfc3bd5a flake8: fix warnings (#5759) 2017-10-13 15:16:58 -06:00
Ondřej Čertík
6c3184820a Use cflags instead of the args variable (#5756) 
That way the user can still append things to CFLAGS.
 2017-10-13 15:15:06 -06:00
Christoph Junghans
3c7dd367f8 py-espresso: initial commit (#5724) 2017-10-13 12:29:30 -07:00
Christoph Junghans
23e801923d espressopp -> py-espressopp (#5732) 
* espressopp -> py-espressopp

* Update package.py
 2017-10-13 12:28:36 -07:00
Ondřej Čertík
e76cfbbfd8 Fix m4 to compile with Intel (#5728) 
Fixes #5705.
 2017-10-13 11:20:49 -06:00
Yifan Zhu
8ffe18f1dc r-biostrings: added versioned dependency on r (#5667) 2017-10-13 07:51:30 -06:00
Yifan Zhu
ce1e5e3098 r-zlibbioc: added versioned dependency on r (#5674) 2017-10-13 07:50:10 -06:00
Denis Davydov
b8c1ce43fa trilinos / oce : add missing if before calling macOS_version (#5743) 
* trilinos: add missing if before calling macOS_version

* oce: add missing if before calling macOS_version
 2017-10-13 07:49:18 -06:00
Yifan Zhu
9716a6f37f r-readr: created new package (#5741) 2017-10-13 07:47:43 -06:00
Yifan Zhu
350624a231 r-dorng: created new package (#5740) 2017-10-13 07:47:01 -06:00
Yifan Zhu
9f3e055e8b r-stringr: added list_url and version 1.2.0 (#5738) 2017-10-13 07:46:29 -06:00
Yifan Zhu
525b69bbad r-stringi: added list_url and version 1.1.5 and 1.1.3 (#5737) 2017-10-13 07:45:26 -06:00
Yifan Zhu
0b117a03c6 r-summarizedexperiment: created new package (#5734) 2017-10-13 07:45:05 -06:00
Yifan Zhu
501ebe6706 r-yaqcaffy: added list_url and versioned dependency on r (#5730) 2017-10-13 07:44:26 -06:00
Denis Davydov
65f12c8160 slepc: refine version constraints for petsc 3.8 (#5752) 2017-10-13 07:11:17 -06:00
Denis Davydov
22ef8efce9 openblas: remove extra develop version (#5750) 2017-10-13 12:10:05 +02:00
Denis Davydov
b182e2334d gettext: fix prefix (#5749) 2017-10-13 10:52:55 +02:00
Brian Van Essen
bd185b8146 Lbann flags (#5747) 
* Fixed the datatype flag in the LBANN package.  Also added develop
version to OpenBLAS.

* Fixed where the datatype flag should be set.
 2017-10-12 20:23:38 -06:00
Yifan Zhu
f2a6685d8c r-gcrma: added versioned dependency on r (#5670) 2017-10-12 16:18:30 -06:00
Yifan Zhu
d4906169e0 r-simpleaffy: added versioned dependency on r (#5673) 2017-10-12 16:18:15 -06:00
Satish Balay
59163f9750 petsc: add in maintainers (#5729) 2017-10-12 15:09:47 -06:00
David Hows
8ff8b7476c Add the option for a versioned layout to boost (#5709) 2017-10-12 12:51:39 -06:00
Audrey Thoma
36ed96e7dd kaks-calculator: new package (#5725) 
* kaks-calculator: new package

* kaks-calculator: new package

* fixing homepage
 2017-10-12 12:47:11 -06:00
Satish Balay
98c2184bd3 petsc: update to latest 3.8 version [and include 3.7.7] (#5723) 
Also fix flake8 warning "import os should be before import sys"
 2017-10-12 12:46:00 -06:00