Commit graph

7967 commits

Author SHA1 Message Date
Jon Rood
5cd593743e PNetCDF package: enable option required by NetCDF (#11420)
The --enable-relax-coord-bound option was added in 1.8.0. NetCDF
4.6.3 enabled relax coords by default and required it from PNetCDF.
PNetCDF 1.10.0 enabled it by default but for versions between 1.8.0
and 1.10.0 it should be enabled explicitly.
2019-05-15 05:15:38 +09:00
Peter Scheibel
c54f23d405
CUDA package: exclude compat libs (#11449)
CUDA 10.0 provides Compatability libraries for running newer versions
of CUDA with older drivers. These do not work with newer drivers.
2019-05-15 04:59:12 +09:00
Justin S
a5cf50df2e megadock: new package at 4.0.3 (#10537)
* megadock: new package at 4.0.3

* megadock: remove CudaPackage redundancies

* megadock: move env vars to build targets, use cuda_arch variant

* megadock: flake8 fixes, more flexible mathlib
2019-05-14 14:47:19 -05:00
Jon Rood
f7a778af3c Fix py-yt for Python 2 by requesting older py-ipython version (#11416)
* Fix py-yt for Python 2 by requesting older py-ipython version.
* Add conflicts statement to py-ipython because version 7: is not
  compatible with python@2.7
2019-05-15 04:24:52 +09:00
william-dawson
76dd7a92e1 New Package: NTPoly (#11412) 2019-05-15 04:06:10 +09:00
Jon Rood
4a013adc3e Add new versions of metaphysicl and change masa to use branch instead of tag. (#11436) 2019-05-14 08:56:52 +09:00
Justin S
4fcd70cc29 r-bh: add 1.69.0-1 (#11435) 2019-05-14 08:56:14 +09:00
Levi Baber
71d8b8a9b6 rename py-pauvr to py-pauvre (#11437)
* rename py-pauvr to py-pauvre
2019-05-14 08:55:53 +09:00
George Zagaris
a27f2978b9 m4 package: fix OS version check (#11290)
f242f5f removed spec.architecture.platform_os, which was used to test
an option in the 'm4' package. The attribute is now accessed as
'spec.architecture.os'.
2019-05-14 04:53:23 +09:00
Adam J. Stewart
f283487670 Add master branch of leveldb (#11405) 2019-05-13 14:35:15 -04:00
Shane R. Spencer
dcbe798ca7 New package: py-pycares (starting at 3.0.0) (#11340) 2019-05-11 03:48:37 +09:00
Chuck Atkins
418d9f07dc mesa: Add 19.0.4 (#11415) 2019-05-10 13:25:26 -05:00
Hans Pabst
8f0fe5939f LIBXSMM 1.12 (#11414) 2019-05-10 13:11:47 -05:00
Jon Rood
feac68d248 Add new version of PGI compiler. (#11417) 2019-05-10 13:11:23 -05:00
Chris Green
7467a46c2c sqlite: add versions; restore old versions; variant resolves security issues. (#11336)
* Add versions 3.27.{0,1,2} and 3.28.0
* Add url_for_version: the URL format includes the year so this
  function maps version ranges to years
* Restore patches for versions removed in 84c547c: this commit
  removed versions before 3.26.0 due to a security issue with FTS
  support. Add a +fts variant (default true) that enables FTS
  support along with a conflict for +fts with earlier versions.
2019-05-11 02:58:23 +09:00
Chuck Atkins
85fa2dbe36
paraview: Fix OpenGL search to ignore glvnd (#11400) 2019-05-10 09:47:20 -04:00
xfzhao
d0bfe753be py-pauvr:new package (#11292)
* py-pauvr:new package

* py-pauvr: using url and Releases

* py-pauvr: remove extra comments
2019-05-10 08:29:45 -05:00
Peter Josef Scheibel
7e94774214 update aom package license 2019-05-10 04:37:56 +09:00
Peter Josef Scheibel
57a65acedc update license date range for simgrid 2019-05-10 04:37:56 +09:00
Mark W. Krentel
26b9369c57 dyninst: update cmake args and boost dependency (#11378)
* Starting with the upcoming 10.1 release, Dyninst changed the names of
  some cmake args to camel case: LIBELF_* to LibElf_* and LIBDWARF_* to
  LibDwarf_*.  This change is needed now for @develop and will be used
  for 10.1 when it is released.
* New versions of Dyninst now requires cmake version 3.4.0 or later.
* Restrict boost dependency version to < 1.70.0 to avoid build error
2019-05-10 03:58:41 +09:00
David Gardner
ac3cbfd69a update to texlive 2019 (#11365) 2019-05-09 13:47:43 -05:00
Tiziano Müller
92c4567404 elpa: override headers prop for common include-dir localization
... and apply this in SIRIUS, CP2K & QE.

Thanks to @scheibelp for the idea.
2019-05-10 03:43:02 +09:00
Tiziano Müller
f87722b74d packages/cp2k: require libxsmm 1.11+ 2019-05-10 03:43:02 +09:00
Tiziano Müller
4b3e43cc64 packages/cp2k: build with -ggdb with GNU for backtraces 2019-05-10 03:43:02 +09:00
Tiziano Müller
f343d6fc68 packages/cp2k: add support for sirius 2019-05-10 03:43:02 +09:00
Tiziano Müller
844a993605 packages/json-fortran: initial commit, required by CP2K+sirius 2019-05-10 03:43:02 +09:00
Tiziano Müller
a3341bbdf3 packages/sirius: initial commit 2019-05-10 03:43:02 +09:00
Tiziano Müller
3b72d71d9c packages/libvdwxc: initial commit, required for SIRIUS 2019-05-10 03:43:02 +09:00
Jerome Soumagne
a5f88d6ec8 Clean up mercury package and add boostsys, shared variants (#11368)
Use tarballs instead of git tags

Fix openpa dependency on gcc < 4.9

Fix boost dependency

Change sm variant default to true
2019-05-09 12:56:10 -05:00
Michael Kuhn
d284ea39a1 nco: Add 4.7.9 (#11389)
Earlier versions do not compile with gcc@9.
2019-05-09 12:33:36 -05:00
Michael Kuhn
ebc32319f6 netcdf: Fix build if curl is not installed (#11387)
For 4.7.0, configure fails if curl is not installed.
2019-05-09 13:23:49 -04:00
Michael Kuhn
4e0c909d0a qt: Fix build with gcc@9 (#11391) 2019-05-09 11:28:56 -05:00
Michael Kuhn
2b378f27a2 papi: Add 5.7.0 (#11390)
This also fixes the GCC patch to be applied for versions 8 and up.
2019-05-09 11:26:05 -05:00
Michael Kuhn
220cf08f82 gcc: Add 9.1.0 (#11386) 2019-05-09 11:25:29 -05:00
Michael Kuhn
a9febea40f mesa: Add missing dependencies (#11394) 2019-05-09 07:56:37 -04:00
Chuck Atkins
5ac0172b33
qt: sqlite needs to be a run dep because of the qt plugin infrastructure (#11399) 2019-05-08 18:41:25 -04:00
Chuck Atkins
a0dc4dc94d
mesa: Add 19.0.{1,2,3} (#11401) 2019-05-08 18:40:26 -04:00
Christoph Junghans
5445e17089
nut: fix nut build (#11393) 2019-05-08 11:34:48 -06:00
Kelly (KT) Thompson
bcdf9572e5 Provide a patched version of random123 that will work on ARM platforms (#11388)
+ The additional patch enables a non-optimized random123 code path that will
  work on ARM architectures. This solution is provided only for version 1.09 to
  allow the most current version of Random123 to function on ARM architectures.
+ A more complete, long term solution will be the addition of a native ARM
  intrinsics-based implementation of random123.  This solution is being worked
  on but it is several weeks or months away.  Once the full implementation is
  available it will be provided to the author/maintainer of Random123.
2019-05-08 08:38:47 -06:00
Chuck Atkins
e4ce4e5c2c llvm: Adjust default supported targets
The default install for llvm should just be the common typical case, i.e.
support for local host and cpu architectures.  Enablingsupport for the wide
array of auxiliary architectures should be explicit rather than implicit.
2019-05-08 04:36:43 +09:00
Janne Blomqvist
4a83b4710c Add OpenBLAS 0.3.6 (#11375)
Signed-off-by: Janne Blomqvist <janne.blomqvist@aalto.fi>
2019-05-07 13:36:38 -05:00
Levi Baber
43204049aa py-scikit-learn: needs setuptools (#11379) 2019-05-07 13:35:32 -05:00
Mark W. Krentel
119d04d53f hpcviewer: add version 2019.04 (#11380) 2019-05-07 13:34:05 -05:00
Chuck Atkins
251f3f5058
ninja: drop python as a run dep (#11347)
* ninja: Make python a build-only dependency

* ninja, ninja-fortran: allow the packages to provide eachother
2019-05-07 13:07:24 -04:00
xfzhao
65ff6ed8f6 py-pysam: update (#11377) 2019-05-07 08:29:05 -05:00
Felix Niederwanger
6de3e1c7b6 New package: CCfits (#11262) 2019-05-07 03:58:29 +09:00
George Hartzell
96a95bb5bf Mesa should depend_on('glproto') (#11360)
* Mesa should depend_on('glproto')

The mesa package refers to `GL/glproto.h`.  On systems that don't have
the OS packages installed, this leads to failures during the build
[e.g. this comment in
01482](https://github.com/spack/spack/pull/10482#issuecomment-488786745).

This fixes it.  Tested on a minimally provisioned CentOS 7.

* Constrain glproto prereq to when +glx

* mesa: make glproto a build only dep
2019-05-06 14:37:13 -04:00
G-Ragghianti
b64a286820 SLATE package: fix variant/header errors (#11353)
* The 'mkl' variant implementation was not complete and was
  preventing the package from building, so remove it.
* The slate.hh file has moved in the 'develop' version (which is
  currently the only version of SLATE listed)
2019-05-07 02:52:40 +09:00
Todd Kordenbrock
dd3573b78d FAODEL: Add FAODEL package to spack (#11323)
* FAODEL: Add FAODEL package to spack

FAODEL (Flexible, Asynchronous, Object Data-Exchange Libraries) is a collection
of software libraries that are used to implement different data management
services on high-performance computing (HPC) platforms. This project is part of
the Advanced Technology Development and Mitigation (ATDM) effort for NNSA's ASC
program at Sandia National Laboratories.

(cherry picked from commit 6afe045d25b5c000b612116a5695aebbec56b61a)

* FAODEL: Update FAODEL package

  Dependencies: set minimum versions for boost, cmake and libfabric
  Dependencies: add conflict for boost v1.59.0
  Patch: add a patch for v1.1803.1
  Patch: add a when= for the v1.1811.1 specific patches
  Compiler: check for C++11 support in gcc

(cherry picked from commit fb6ed2b3cf20d7e4fff647cba5a70887a78f627f)

* FAODEL: Update FAODEL package

  * replace previous maintainers with @tkordenbrock and @craigulmer
  * default to shared libs to meet Spack policy
  * increase min boost version to 1.60.0 and remove boost 1.59.0 conflict
  * replace complex version check with conflict for gcc <= 4.8.0 (C++11 support required)
  * set type=build for cmake
  * enable googletest for all versions with type=build
  * enable tests for for all versions except when MPI is disabled

* FAODEL: Update FAODEL package

  * add version v1.1811.2
  * limit comment line length
2019-05-06 13:44:32 -04:00
Justin M Wozniak
4c6fb4cefe Turbine package: add m4 dependency (#10948)
m4 is a build and run dependency for Turbine: it is used at run time
to generate scheduler job files for the workflows.
2019-05-07 02:36:32 +09:00