Commit graph

35146 commits

Author SHA1 Message Date
James Beal
727eaf3c82
samtools: add v1.19.2 (#42550)
Co-authored-by: James Beal <jb23@sanger.ac.uk>
2024-02-12 11:09:05 +01:00
Thomas Madlener
d014671bcb
edm4hep: add v0.10.5, deprecate broken v0.10.4 (#42561) 2024-02-12 11:01:44 +01:00
Caetano Melone
4edb073a20
litestream: add new package (#42565) 2024-02-12 10:58:12 +01:00
G-Ragghianti
5d2b9514db
Fixed papi release tar hash due to rebuild of tar file (#42567) 2024-02-12 10:57:12 +01:00
Ken Raffenetti
2491855678
mpich: Fix +vci variant for newer releases (#42570)
--with-ch4-max-vcis=default is no longer accepted by MPICH configure
since the 4.1 release. Just omit the option from the +vci variant, since
configure will select the default value in its absence.
2024-02-12 10:55:57 +01:00
Mark Grondona
b23038db53
flux-core: drop czmq,jsonschema requirements for recent versions (#42560)
Problem: Older versions of the flux-core package require czmq and
jsonschema, but these dependencies have been dropped in recent
versions.

Add `when=` arguments to drop these requirements for the appropriate
versions of flux-core.
2024-02-12 10:55:00 +01:00
Julien Cortial
6d68dcf13c
libuv: update compiler requirements (#42576) 2024-02-12 10:54:10 +01:00
Adam J. Stewart
fbf6db035b
py-lightning: add v2.2.0 (#42577) 2024-02-12 10:49:17 +01:00
Richard Berger
1a43fc1e62
lammps: add v20240207 (#42587)
* lammps: correct license

LAMMPS has always been GPL-2.0 only. The clarification was made here:
9a8ac23663
2024-02-12 10:46:05 +01:00
Mikael Simberg
8210853276
pika: add v0.22.2 (#42617) 2024-02-12 02:38:50 -07:00
Sebastian Ehlert
e8bf6ab352
orca: added new versions (#38822) 2024-02-12 10:20:36 +01:00
Sinan
0aa91b99ed
freexl: add v2.0.0 (#42574)
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
2024-02-12 10:16:31 +01:00
kinagaki-fj
d93b035f14
xmlf90: add version and fix for fujitsu compiler (#42305) 2024-02-12 10:14:11 +01:00
kinagaki-fj
adb0757f72
blitz: fix for fujitsu compiler (#42307)
Co-authored-by: m-shunji <m.shunji@fujitsu.com>
2024-02-12 10:11:26 +01:00
George Malerbo
2369a8f4e5
raylib: add new package (#42594) 2024-02-12 10:07:33 +01:00
Alec Scott
a6844d26e0
coretuils: add v9.4 (#42596) 2024-02-12 10:03:00 +01:00
Alec Scott
95c663224d
curl: add v8.6.0 (#42597) 2024-02-12 10:02:26 +01:00
Brian Vanderwende
6dc01f0d94
Fix for tirpc variable in libdap4 (#42511) 2024-02-12 10:01:53 +01:00
Adam J. Stewart
2d3eeecef8
Sleef: fix build on macOS arm64, add test support (#42583) 2024-02-12 09:59:12 +01:00
Alec Scott
167a168a63
bfs: add v3.1 (#42595) 2024-02-12 09:54:45 +01:00
Elsa Gonsiorowski, PhD
10af235895
lwgrp: add autotools deps when building @main (#42564) 2024-02-12 09:40:52 +01:00
Cyrus Harrison
5d6dec5a5c
conduit: add v0.9.1 (#42510) 2024-02-12 09:30:04 +01:00
Massimiliano Culpo
6ae0696e2f
sirius: fix self-referential dependencies (#42552) 2024-02-12 09:21:14 +01:00
Massimiliano Culpo
9688e91a6b
spla: fix self-referential dependencies (#42553) 2024-02-12 09:15:27 +01:00
Alec Scott
c026943c8e
glab: add v1.36.0 (#42610) 2024-02-12 09:14:20 +01:00
Alec Scott
662ab2d4c5
xz: add v5.4.6 & v5.4.5 (#42612) 2024-02-12 09:13:49 +01:00
Alec Scott
722b00bbfb
go: add v1.22.0 (#42611) 2024-02-12 09:12:31 +01:00
Alberto Invernizzi
6dbb56ba36
nvpl-lapack: fix versioning and add missing dependency (#42599)
* fix wrong versioning
use doc version and not the one extrapolated from the path (i.e. 0.2.0.1)

* nvpl-lapack requires nvpl-blas
propagate matching variants to nvpl-blas dependency

Co-authored-by: albestro <albestro@users.noreply.github.com>
2024-02-12 09:11:47 +01:00
Dave Keeshan
2e5bdd2679
yosys: add v0.38 (#42616) 2024-02-12 09:08:03 +01:00
Maciej Wójcik
97ec167452
py-immutables: fix building, add new versions (#42530)
* py-immutables: fix building, add new versions

* Explain constraint

* py-immutables: Wrap line
2024-02-11 16:07:54 -07:00
Garth N. Wells
2b8dcc0f57
fenicsx: deprecate older versions (#42613)
* Deprecate FEniCSx packages

* Format files

* Simplification
2024-02-11 15:57:39 -07:00
Maciej Wójcik
6312658888
py-configargparse: add new versions (#42533)
* py-configargparse: add new versions

* py-configargparse: Remove unnecessary constraint
2024-02-11 15:52:37 -07:00
Mikhail Titov
213818ffb5
Update package versions: RADICAL-Cybertools (RE, RG, RP, RS, RU) (#41997)
* rct: update packages (RE, RG, RP, RS, RU) with new versions

* rct: updated style

* rct: 1.46 release

* rct: RP 1.46.1 (hotfix applied)

* rct: deprecated old versions

* Update var/spack/repos/builtin/packages/py-radical-entk/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-radical-pilot/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-radical-saga/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* rct: brought back dependencies for deprecated versions

* rct: RP hotfix release 1.46.2

* rct: new stack release 1.47.0

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-02-11 15:09:20 -06:00
Alex Leute
aed5d1a88d
py-gpy: added +plotting variant (#42588)
Co-authored-by: Alex C Leute <aclrc@rit.edu>
2024-02-11 14:58:23 -06:00
Stephen Hudson
8b94128625
libEnsemble: add v1.2.0 (#42591) 2024-02-11 14:57:04 -06:00
Maciej Wójcik
4d91fbdf0f
py-versioneer-518: add a workaround (#42534) 2024-02-11 14:48:29 -06:00
George Young
d7aa9d38fa
py-deeptools: add 3.5.3 (#39951)
* py-deeptools: add 3.5.3

* switching tp pypi

* removing patch for tests

---------

Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2024-02-11 14:31:46 -06:00
Eric Berquist
b3369ac669
Add pre-commit 3.6.0 (#42404)
* Add pre-commit 3.6.0

* pre-commit 3.6.0 drops support for Python <3.9
2024-02-11 14:29:26 -06:00
George Young
e68fde6f4e
py-ucsf-pyem: updating to commit e92cd4d (#42428)
* py-ucsf-pyem: updating to commit e92cd4d

* py-pyfftw: updating to @0.13:1

* py-ucsf-pyem: correcting install of scripts

* Upper limits

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Upper limits

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* updates from github review

---------

Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-02-11 13:01:58 -06:00
Dani
f0e49a54c0
new builtin package: py-simpletraj (#42460)
* new builtin package: py-simpletraj

* long line splitted in two for the style test

* removed trailing whitespace for the style test
2024-02-11 12:56:31 -06:00
Robert Cohn
2c67571726
[oneapi]: make headers match oneapi vars.sh (#42614)
* [oneapi]: make headers match oneapi vars.sh

* update

* update
2024-02-11 08:23:53 -08:00
Maciej Wójcik
fae6d3780f
gromacs: add new version (#42609) 2024-02-10 08:19:12 -07:00
Howard Pritchard
34ba8e9527
openmpi: add 5.0.2 (#42568)
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2024-02-10 14:36:18 +01:00
Massimiliano Culpo
686d1bc1ea
mfem: fix self-referential dependencies (#42487) 2024-02-10 13:08:13 +01:00
snehring
9b42f9ab18
viennarna package: add v2.6.4 (#42606) 2024-02-10 02:38:03 -07:00
Alec Scott
1d508e1be3
fzf package: add v0.46.1 (#42603)
* fzf: add v0.46.1
* Standardize vim plugin install
2024-02-09 16:29:20 -08:00
Alec Scott
41f735a4ee
gh package: add v2.43.1 (#42604)
* gh: add v2.43.1
* gh: fix go dependency versions
2024-02-09 16:28:06 -08:00
James Taliaferro
e9e6eb613b
libsixel: add new package (#40031)
* add new package libsixel

* reorder to group variants and dependencies together

* Switch to using source from fork

The original developer of libsixel, Hayaki Saito (@saitoha), disappeared
in early 2020 and has not updated the repository or been seen since.
However, a fork of the project has been created at libsixel/libsixel,
and that fork has been getting much more regular updates. In this commit
I switch the package to using the better-maintained, now apparently
canonical fork of the project.

That project switched the build system from autotools to Meson, so much
of the build arguments code needed to be rewritten. The newest official
release also contained an error in meson.build which would break on
newer versions of Meson. That error only applied to the libjpeg and
libpng variants, though, so I switched the default to use libgd which
has broader format support anyway.

* blacken

* broke description into multiple lines

* allow libjpeg, etc to be loaded automatically
2024-02-09 12:09:10 -08:00
Chris Marsh
6dd19594ab
Resolve unzip build failure with %oneapi (#42593)
* apply patch to all compilers as per spack/issues/42007

* [@spackbot] updating style on behalf of Chrismarsh

* Resolve flake8 style issue from spackbot

* fix flake8 trailing whitespace

---------

Co-authored-by: Chrismarsh <Chrismarsh@users.noreply.github.com>
2024-02-09 12:04:05 -08:00
Harmen Stoppels
4f0a8fce52
hooks: remove 7 unused hooks (#42575)
These 7 hooks were not used.

- Six of them related to install phases were unused after `spack`
  `monitor` was removed, and the code seems to have bit rotten as there
  were reports they were not (always?) triggered when they should.
- The post environment one was made redundant after spack install for
  environment started following the common code path for generating
  module files in #42147.

It should not be a breaking change to remove, since users cannot define
hooks in extensions, they would have to fork Spack.

If we ever _were_ to make those hooks extendable outside of core Spack,
it would also be better to start with fewer rather than more, cause
everything you expose gets relied upon...

Removing those also allows us to rethink what hooks we really need, and
in particular it seems like we need a hook that runs post install also when
the spec is inserted into the database.
2024-02-09 20:52:09 +01:00