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Author SHA1 Message Date
Brian Van Essen
0d08e18df5
Minor cleanup for conduit and hydrogen (#17136) 
* Fix how the Conduit detects that the MPI compiler is the same as the
CC compiler and is more careful when it sets the MPI compilers to be
the Cray PE system compilers.

* Remove unnecessary push of the MPI compilers to the C compilers for Hydrogen.
 2020-06-22 09:32:55 +02:00
Wouter Deconinck
3fc963b1f9
delphes: better specify the dependency on root (#17175) 
Compiling delphes with default root cxxstd=11 fails, see e.g. https://sft.its.cern.ch/jira/si/jira.issueviews:issue-html/ROOT-9492/ROOT-9492.html
 2020-06-22 09:31:57 +02:00
iarspider
0b74285a14
py-pyheadtail: added new package at v1.14.1 (#17159) 
Co-authored-by: iarspider <iarpsider@gmail.com>
 2020-06-22 08:52:19 +02:00
Hans Pabst
73b3bbbd22
libxsmm: added v1.16 (#17185) 2020-06-22 08:36:46 +02:00
Christoph Junghans
e91d7988e5
votca-*: added v1.6.1 (#17186) 2020-06-22 08:36:01 +02:00
Michael Kuhn
0cddfb9d8a
meson: added v0.54.3 (#17190) 2020-06-22 08:30:17 +02:00
Adam J. Stewart
4bfa844de0
SciPy: add v1.5.0 (#17189) 2020-06-22 08:20:04 +02:00
Adam J. Stewart
c7f6608f5e
NumPy: add v1.19.0 (#17183) 2020-06-20 17:46:10 -05:00
Chris White
a20ba315f5
Axom/Conduit: Fix error when fortran is not defined (#17171) 
* Fix error when fortran is not defined

* Guard more ~fortran cases
 2020-06-19 14:31:09 -05:00
G-Ragghianti
844312f213
Updated slate package to use new git repo. Added maintainer. (#17165) 
* Updated slate package to use new git repo.  Added maintainer.
 2020-06-19 11:10:03 -05:00
Alexander Knieps
b73536b4ad
Update to swipl package (#17173) 
* Added version 8.2.0, added dependency for documentation build, added variants for documentations

* Renamed variant '+man' to '+html'

Co-authored-by: Alexander Knieps <a.knieps@fz-juelich.de>
 2020-06-19 11:03:25 -05:00
Adam J. Stewart
b80d5e74e5
PyTorch: add v1.5.1 (#17167) 2020-06-18 17:24:38 -05:00
Adam J. Stewart
5a0c5de50b
py-pandas: add v1.0.5 (#17161) 2020-06-18 17:24:27 -05:00
Adam J. Stewart
33e6d0f378
py-matplotlib: add v3.2.2 (#17160) 2020-06-18 17:24:14 -05:00
Massimiliano Culpo
6d9f0262de
libjpeg-turbo: fixed sha256 (#17154) 2020-06-18 14:44:32 +02:00
lorddavidiii
68c13d76f9
arpack-ng: fix build with gcc@10: (#17131) 2020-06-18 14:43:52 +02:00
darmac
2a13bad8eb
atop: fix ld error (#17150) 2020-06-18 14:42:52 +02:00
Sinan
1de20f00b6
arrayfire: added cudnn as a dependency when +cuda (#17146) 
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
 2020-06-18 11:20:17 +02:00
Omar Padron
82eb71cb95
Explicitly install setuptools in docker images (#17143) 2020-06-18 11:16:24 +02:00
Shintaro Iwasaki
910d258706
argobots, bolt: updates to package.py (#17117) 2020-06-18 11:11:59 +02:00
Itaru Kitayama
4fe78bceaa
cube and libjpeg-turbo: added cube v4.5 and libjpeg-turbo v2.0.4 (#17132) 2020-06-18 10:40:54 +02:00
Axel Huebl
2fd3ab3c9c
Fetching from urls: Error Message (#16434) 
* Fetching from urls: Error Message

Fix the error message when fetching from consecutive `urls` of a
package version. Each fail should show the currently failing URL,
not the first url.

Example multi-problem run that occured in real life:
```
==> 5821: Installing util-macros
curl: (28) Connection timed out after 10000 milliseconds
curl: (16) Error in the HTTP2 framing layer
curl: (22) The requested URL returned error: 403 Forbidden
==> Fetching https://www.x.org/archive/individual/util/util-macros-1.19.1.tar.bz2
==> Failed to fetch file from URL: https://www.x.org/archive/individual/util/util-macros-1.19.1.tar.bz2
    Curl failed with error 28
==> Fetching https://mirrors.ircam.fr/pub/x.org/individual/util/util-macros-1.19.1.tar.bz2
==> Failed to fetch file from URL: https://www.x.org/archive/individual/util/util-macros-1.19.1.tar.bz2
    Curl failed with error 16
==> Fetching http://xorg.mirrors.pair.com/individual/util/util-macros-1.19.1.tar.bz2
==> Failed to fetch file from URL: https://www.x.org/archive/individual/util/util-macros-1.19.1.tar.bz2
    URL https://www.x.org/archive/individual/util/util-macros-1.19.1.tar.bz2 was not found!
==> Fetching from https://www.x.org/archive/individual/util/util-macros-1.19.1.tar.bz2 failed.
==> Error: FetchError: All fetchers failed for spack-stage-util-macros-1.19.1-se2a2e74oyusj2r4esgcb7pr3qhh45ef
```

- `urls[0]`: HTTP2 layer error
- `urls[1]`: timeout
- `urls[2]`: missing file on mirror

* x.org: two more mirrors

x.org mirrors are a bit tricky, since many are out-of-sync or off.
A good package to test with is `util-macros`, which had a "recent"
release.
 2020-06-18 10:37:32 +02:00
Adam J. Stewart
1f85d6eceb
Docs: fix rst link to spack ci (#17147) 2020-06-18 09:44:03 +02:00
Toyohisa Kameyama
58e20430b1
minimap2: fix a typo in the recipe (#17148) 2020-06-18 09:43:06 +02:00
Seth R. Johnson
1bb94f2913
glib: fix 2.56 build with python@2 (#17144) 
* glib: fix 2.56 build with python@2

* flake8
 2020-06-17 23:32:25 -05:00
Joseph Ciurej
c8199ece65
python: fix patch issue for 2.7.X, 3.7.X (#17140) 
* python: fixing patch issue for 2.7.X, 3.7.X versions (#17128)

* python: fixing the C/C++ 'distutils' patching for @3.7.0:3.7.1
 2020-06-17 23:30:41 -05:00
Greg Becker
5b59e883c1
cray module do not work without CRAY_LD_LIBRARY_PATH (#17031) 
Co-authored-by: Gregory Becker <becker33.llnl.gov>
 2020-06-17 15:53:30 -07:00
Adam J. Stewart
c0cdc00409
oneDNN: add v1.5.0 (#17137) 2020-06-17 16:01:46 -05:00
Michael Kuhn
f7008f37d4 slurm: Fix build with gcc@10: 
gcc@10: defaults to -fno-common, which breaks slurm up to version
20-02-1. For more details, see https://gcc.gnu.org/gcc-10/porting_to.html
 2020-06-17 13:42:00 -07:00
Sergey Kosukhin
01b277ad0f
openmpi: options for local transport (#16831) 2020-06-17 14:41:24 -05:00
Chris White
506f31b7a7
axom conduit mfem build fixes (#17121) 
* honor global compiler flags

* Honor debug variant when using global compiler flags

* Add cppflags to c/cxx flags, clarify flag handling
 2020-06-17 12:43:47 -05:00
vvolkl
03880f5413
Split hepmc Into hepmc and hepmc3 (#16892) 2020-06-17 12:13:27 -05:00
Michio Ogawa
ad18933ef4
FrontISTR: various updates to the package (#17089) 
* Added maintainers
* Refined dependencies
* Changed git url
 2020-06-17 17:45:51 +02:00
Sergey Kosukhin
eca08c77e3
openmpi: fixes for NAG compiler (#17073) 
* openmpi: fixes for NAG compiler

* openmpi: more fixes
 2020-06-17 10:32:08 -05:00
Seth R. Johnson
e90c229dab
Fix/clarify some trilinos variants/dependencies (#17006) 
- Parallel HDF5 isn't required -- the comment seems to be about a
  transitive dependency with pnetcdf.
- Boost usage should respect the variant, not automatically be reenabled
  when choosing DTK.
 2020-06-17 09:34:53 -05:00
takanori-ihara
eb5f1886b7
py-tensorflow: Update for use with Fujitsu compiler (#17088) 
* py-tensorflow: Update for use with Fujitsu compiler

* py-tensorflow: remove -march option

* fix flake8 error
 2020-06-17 08:00:36 -05:00
darmac
dc0dfe9220
New package: lynx (#17099) 2020-06-16 23:04:00 -07:00
Muhammad Haseeb
d2b745b3d6
lua: requires -ltermcap when building (#17108) 2020-06-16 22:55:46 -07:00
Fabian Brandt
494a523636
libnetworkit: add version 7.0 (#17111) 2020-06-16 22:44:43 -07:00
Ryan Mast
0c28d8932f helics: Add version 2.5.2 2020-06-16 22:43:27 -07:00
Seth R. Johnson
93fcca900f
vecgeom: add version 1.1.7 (#17120) 2020-06-16 22:42:56 -07:00
h-denpo
fd8971feec
Modified for Fujitsu compiler. (#17124) 2020-06-16 22:36:08 -05:00
Glenn Johnson
8e6f0c353c
Add patch for older versions of py-tensorflow (#17122) 
Versions of py-tensorflow between versions 1.1 and 1.14 need a patch to
avoid an import error on the cloud package even if built without support
for the cloud package.
 2020-06-16 22:35:03 -05:00
Toyohisa Kameyama
6e467d13a4
mxnet: avoid GNU parallel shuffle without openmp. (#17095) 2020-06-16 22:24:38 -05:00
takanori-ihara
b0c73c3325
bazel: Update for use with Fujitsu compiler (#16860) 
* bazel: Update for use with Fujitsu compiler

* bazel: Fix for use with Fujitsu compiler

* bazel: Fix flake8 error

* bazel: add conflicts setting for use with Fujitsu compiler

* fix flake8 error

* fix flake8 error
 2020-06-16 22:18:04 -05:00
takanori-ihara
84e117b497
Add compiler option to use with Fujitsu compiler (#17067) 
* Add compiler option to use with Fujitsu compiler

* Fix flake8 error

* remove 1-1_fcc_tf_patch.patch

* fix flake8 error
 2020-06-16 21:59:20 -05:00
Axel Huebl
896a14af82
Doc: E4S Build Cache Link (#16986) 
Link to the E4S build cache in the according section of the docs.
 2020-06-16 15:53:34 -07:00
Geoffrey Oxberry
4652b217cf
pango: add libffi, glib, and other dependencies (#12384) 2020-06-16 15:34:18 -07:00
Andrew W Elble
ff816f76b3
ruby: add version 2.7.1 (#17112) 2020-06-16 21:35:49 +02:00
Tom Payerle
4a948060cf
VTK: add version 9.0.0; update Python dependency constraints (#17019) 
In Python 3.8, the reserved "tp_print" slot was changed from a function
pointer to a number, which broke the Python wrapping code in vtk@8
(causing "cannot convert 'std::nullptr_t' to 'Py_ssize_t'" errors in
various places).  This is fixed in vtk@9.0.0.

This patch:

1) adds vtk@9.0.0
2) updates depends_on constraints to only use python@3.8: for vtk@9:
   vtk@:8 depends on python@2, and vtk@8.0.1:8.9.9 depends on python@:3.7
3) Adds CMake flag VTK_PYTHON_VERSION=3 when using python@3 with vtk@9
 2020-06-16 11:33:35 -07:00