Commit graph

15795 commits

Author SHA1 Message Date
Todd Gamblin
81b147cc0a package: add spack.package.possible_dependencies method
- this version allows getting possible dependencies of multiple packages
  or specs at once.

- New method handles calling `PackageBase.possible_dependencies` multiple
  times and passing `visited` dict around.
2019-12-18 21:10:31 -08:00
Todd Gamblin
a3799b2c7b performance: speed up spack find in environments
`Environment.added_specs()` has a loop around calls to
`Package.installed()`, which can result in repeated DB queries.  Optimize
this with a read transaction in `Environment`.
2019-12-18 16:07:28 -08:00
Todd Gamblin
0e9c8d236c performance: spack spec should use a read transacction with -I
`spack spec -I` queries the database for installation status and should
use a read transaction around calls to `Spec.tree()`.
2019-12-18 16:07:28 -08:00
Todd Gamblin
f73cdac731 concretization: improve performance by avoiding database locks
Checks for deprecated specs were repeatedly taking out read locks on the
database, which can be very slow.

- [x] put a read transaction around the deprecation check
2019-12-18 16:07:28 -08:00
Todd Gamblin
33335c9d0a performance: memoize spack.architecture.get_platform()
`get_platform()` is pretty expensive and can be called many times in a
spack invocation.

- [x] memoize `get_platform()`
2019-12-18 16:07:28 -08:00
t-karatsu
92c2c47f72 aspell: Rename 'darwin.patch' and apply it to all targets. (#14206) 2019-12-18 17:10:05 -06:00
Greg Sjaardema
8da6fcf324 NETCDF-C: Add latest release 4.7.3 (#14214)
Added checksum for latest NetCDF release 4.7.3
2019-12-18 17:09:50 -06:00
Greg Becker
67603d71bc Add dependencies for hpcrypt (#8067)
* Add dependencies for hpcrypt

* address review comments

* flake

* license-fix

* fix checksums

* Update py-hvace homepage

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* update py-hvac url

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-12-18 17:09:26 -06:00
t-karatsu
135cf4835f amrex: Define module directry when compiling with Fujitsu compiler. (#14124) 2019-12-18 13:47:21 -06:00
Michael Kuhn
52894f5c71 Fix pkgconfig dependencies (#14175)
pkgconfig is the virtual provider, pkg-config is an implementation.
2019-12-18 13:46:45 -06:00
Greg Sjaardema
5052ce803d PNETCDF: Update to include latest release 1.12.1 (#14213)
Added checksum for recent 1.12.1 release.
2019-12-18 13:45:19 -06:00
Greg Sjaardema
99a19596c4 SEACAS: Update to include new versions (#14212)
Added checksum and tag name for last two SEACAS releases.
2019-12-18 13:45:03 -06:00
Todd Gamblin
52ebc19b4e bugfix: don't fail if checking for "real" compiler version
doesn't understand a custom, user-defined compiler version.  However, if
the compiler's version check fails, you can't build anything with the
custom compiler.

- [x] Be more lenient: fall back to the custom compiler version and use
  it verbatim if the version check fails.
2019-12-18 11:37:59 -08:00
Todd Gamblin
4eb54b6358 bugfix: pgcc -V returns 2 on power machines
`pgcc -V` was failing on power machines because it returns 2 (despite
correctly printing version information).  On x86_64 machines the same
command returns 0 and doesn't cause an error.

- [x] Ignore return value of 2 for pgcc when doign a version check
2019-12-18 11:37:59 -08:00
Adam J. Stewart
fa5e8aa876
wireshark: remove non-existing dependencies (#14209) 2019-12-18 12:55:15 -06:00
Adam J. Stewart
09b17ea147
py-scikit-optimize: fix test dependency (#14210) 2019-12-18 12:47:35 -06:00
Marc Mengel
0607579fd3 New package: py-zc-lockfile (#13586)
* package py-zc-lockfile

* package py-zc-lockfile

* autopep8, docutils cleanup

* Update var/spack/repos/builtin/packages/py-zc-lockfile/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-zc-lockfile/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* dependency at wrong level

* license bits

* Remove py-zc-buildout dependency
2019-12-18 12:17:39 -06:00
darmac
201a62d957 add new package : filebench (#14158)
* add new package : filebench

* remove alpha version and duplicated autoheader cmd

* refine automake cmd in sh()

* refine filebench url as a stable tarball link
2019-12-18 11:30:10 -06:00
darmac
5a1b6e1cfc add new package : hama (#14159)
* add new package : hama

* mv hama/hama/package.py to hama/package.py
2019-12-18 11:29:48 -06:00
darmac
6e12c49c28 Hbase (#14161)
* add new package : hbase

* add hbase description

* refine hbase version and depends
2019-12-18 11:29:30 -06:00
Chris Green
ae3eac0b19 root: Rationalize and improve version, variant and ROOT option handling. (#14203)
* root: Rationalize and improve version, variant and ROOT option handling.

* Completely re-vamp CMake option handling for readability and maintainability:
  * Three categories of option: control, builtin and feature, alphabetically sorted.
  * Each option is described as a list: an option name followed by an optional value which is either Boolean or a string representing the name of a variant. If the value is omitted, it defaults to the option name.
  * New functions `_process_opts()` and `_process_opt()` (nested) to turn all supplied option/value specifications into CMake arguments.
  * Remove overly-terse per-option comments in favor of (much) more comprehensive notes in README.md.
* Variants and conflicts:
  * Remove `test` variant in favor of pegging ROOT `testing` option to the value of `self.run_tests` since the install is unaffected, per ROOT developer.
  * Remove commented-out and never-functional variants: `asimage`, `avahi`, `kerberos`, `ldap`, `libcxx`, `odbc`, `oracle`, `pythia8`, `xinetd`.
  * New variant `vmc` (default `OFF`) to control the Virtual Monte Carlo interface.
  * Conflict: `+opengl` is incompatible with `~x`.
  * Conflict: `http` is now an unconditional conflict due to dependency issues (see README.md).
* Remove commented-out and non-existent dependencies `avahi`, `kerberos`, `ldap`, `libcxx`, `odbc`, `oracle`, `pythia`, `veccore` (per #13949).
* New and changed options:
  * Option `pch` was inadvertently set to `OFF` due to its dependence on a nonexistent variant `pch`. As it happens its value is ignored in the ROOT configuration handling, so there was no deleterious effect. It has been fixed to `ON` to better reflect actual behavior pending enablement of tuntime C++ modules.
* Add new versions 6.18.0{0,2,4}:
  * Require CMake 3.9 for 6.18.00+.
  * Add conflicts for variants `qt4` and `table` representing ROOT build options for which support was discontinued. Remove redundant conflict on \@master.
  * C++ standard is now specified with `-DCMAKE_CXX_STANDARD=X` rather than `-Dcxx=X`.
* Remove old version 5.34.38 (wrong build system).

See README.md for more details of option-related changes.

* Flake8

* `rpath` option is a control option rather than a feature.
2019-12-18 11:14:47 -06:00
Jimmy Tang
3511245ca4 Add abseil-cpp package (#14208) 2019-12-18 09:33:44 -06:00
Hadrien G
9583bde739 Add new DD4hep release and some forgotten build requirements (#14195)
* Add new DD4hep release and some forgotten build requirements

* PR review suggestions

Use master naming convention for development branch, and put versions in decreasing order.
2019-12-18 09:32:23 -06:00
Sinan
a24b973fa4 package/gdal add v2.4.3 (#14204) 2019-12-17 21:57:39 -06:00
Nathan Pinnow
60a22f1a7a Update and Fix ROSE Package (#14186)
* rose: Update boost dependency for rose

* rose: Updated rose to version 0.9.12.45

* rose: Updated jdk dependency

* rose: Updated rose to version 0.9.13.0

* rose: Fixed formatting

* rose: Added maintainer and switch dependency to java@8
2019-12-17 18:18:24 -06:00
Axel Huebl
5db646d768 openPMD-api: 0.10.2 (#14201)
Add the latest release of openPMD-api, v0.10.2
2019-12-17 18:16:26 -06:00
darmac
07f522bed6 add new package : openresty (#14169)
* add new package : openresty

* remove rc version
2019-12-17 14:30:19 -06:00
darmac
6a0d15a5c9 add new package : nicstat (#14173)
* add new package : nicstat

* refine nicstat edit operation

* refine CMODEL regex expression
2019-12-17 14:29:56 -06:00
Brian Van Essen
dc69256a59 Added package for Half C++ header-only library. (#14189)
* Added package for Half C++ header-only library.

Fixed an checksum for Hydrogen 1.3.2.  Cleaned up the Clara package to
not create an empty bin directory.

* Fixed flake8

* Added maintainer
2019-12-17 14:29:31 -06:00
darmac
a52df46e2c add new package : haproxy (#14160)
* add new package : haproxy

* add url_for_version() and refine haproxy build code
2019-12-17 12:50:10 -06:00
darmac
cd8be44f62 add new package : cosbench (#14171)
* add new package : cosbench

* add cosbench depends and remove unstable version

* Update var/spack/repos/builtin/packages/cosbench/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/cosbench/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-12-17 12:48:27 -06:00
Sajid Ali
f657f73e94 tf verbosity to better enable debugging (#14177)
* tf verbosity

* Add more debug flags

	modified:   var/spack/repos/builtin/packages/py-tensorflow/package.py

* Fix later

* More debug/verbose options.

	modified:   var/spack/repos/builtin/packages/py-tensorflow/package.py
2019-12-17 12:46:34 -06:00
Shintaro Iwasaki
1a41380649 sollve: add a version 1.0a2 (#14188) 2019-12-17 12:38:32 -06:00
Yuanqi Wang
8bda848cb9 LAMMPS: Fix USER-REAXC package variant (#14192) 2019-12-17 12:35:06 -06:00
Adam J. Stewart
18c2029fef Fix argparse rST parsing of help messages (#14014)
Thanks!
2019-12-17 10:23:22 -08:00
Adam J. Stewart
189eb5b883
Add py-scipy 1.4.0 (#14193) 2019-12-17 10:00:03 -06:00
t-karatsu
d831db37ca adios2: Fix use of builtin __clear_cache (#14123) 2019-12-17 08:08:22 -05:00
Massimiliano Culpo
5eca4f1470 microarchitectures: readable names for AArch64 vendors (#13825)
Vendors for ARM come out of `/proc/cpuinfo` as hex numbers instead of readable strings.

- Add support for associating vendor names with the hex numbers.
- Also move these mappings from Python code to `microarchitectures.json`
- Move darwin feature name mappings to `microarchitectures.json` as well
2019-12-17 00:47:50 -08:00
Todd Gamblin
a4ff92e42d mrnet: remove nonexisting cti dependency (#14178)
MRNet had an optional dependency on `cti`, which doesn't exist.  Remove
it from the repo, at least until someone adds `cti` back.
2019-12-16 21:03:38 -06:00
Massimiliano Culpo
9ceec7e219 Harden shell detection when procfs is available (#13950) 2019-12-16 14:51:58 -08:00
Hadrien G
e366d5b559 New ACTS version (#14180) 2019-12-16 10:25:37 -06:00
darmac
9ece934084 add new package : py-s3cmd (#14166)
* add new package : py-s3cmd

* add some depends and move depends behind the version
2019-12-16 10:20:15 -06:00
Massimiliano Culpo
f80491826b
Travis exits at the first failing test, pin codecov at v4.5.4 (#14179)
Before this commit we used to run the entire unit test suite
in the presence of a failure. Since we currently rely a lot
on the state of the filesystem etc. the end report was most
of the time showing spurious failures that were a consequence
of the first failing test.

This PR makes unit tests exit at the first failing test

Also, pin codecov at v4.5.4 (last one supporting Python 2.6)
2019-12-16 10:56:54 +01:00
Greg Becker
9f1d728646 match bootstrapped compiler to architecture (#14059) 2019-12-14 16:42:46 -08:00
Peter Scheibel
60580f5871 package hash: gracefully handle @when with non-string args (#14153)
* when constructing package hash, default to including a method in the content hash if we can't determine whether it would be included by examining the AST
* add a test for updated content-hash calculations
* refactor content hash tests to eliminate repeated lines
2019-12-14 14:31:39 -08:00
Mark W. Krentel
410bce91d4 hpctoolkit: update git branch for version 'gpu' (#14155) 2019-12-14 12:37:04 -06:00
Brian Van Essen
34128ca70d Updated Hydrogen version to 1.3.2 (#14156) 2019-12-14 12:36:33 -06:00
darmac
5e9fb6b309 add new package : memcached (#14162) 2019-12-14 12:28:51 -06:00
darmac
986df8c233 add new package : jstorm (#14163) 2019-12-14 12:27:39 -06:00
darmac
0f0e2c4397 add new package : logstash (#14164) 2019-12-14 12:26:43 -06:00