Commit graph

7864 commits

Author SHA1 Message Date
Chris Green
597037c9ff ftgl: update to 2.1.3-rc5. (#11214)
* ftgl: update to 2.1.3-rc5.

This updates to the last release (from 2008) with patches required to work with Spack and Root.

* Working 2.1.2 with/without docs, 2.1.3-rc5 without.
2019-04-23 09:42:10 -05:00
Eric Martin
bc080d753c py-umi-tools: Add latest versions (#11256) 2019-04-23 18:23:44 +09:00
George Hartzell
efe62b7d6d Install squashfs exe's into prefix.bin, not prefix (#11246)
The squashfs Makefile's `INSTALL_DIR` args is the path to the `bin` directory, not the top of the install tree.

Adjust accordingly.
2019-04-22 20:16:57 +02:00
Janne Blomqvist
5fb6145f6f OpenBLAS: Allow enabling/disabling AVX2/512 support
Allow specifying whether AVX2 or AVX512 should be enabled or disabled
on x86 targets.

As AVX2 hardware and toolchain support is quite ubiquitous by now,
AVX2 is enabled by default.  Also AVX2 support is not disabled when
building the +virtual_machine variant.

AVX512 is not supported in older but still supported toolchains,
hardware is still expensive, and OpenBLAS AVX512 kernels still have
bugs. Thus AVX512 is disabled by default.
2019-04-20 16:43:11 -07:00
Matthias Diener
a40492172f hdf5: add symbols (#10991) 2019-04-20 15:09:46 -07:00
Adam J. Stewart
f8dc385392 Mercury package: add version 1.0.1 and update dependencies (#10906)
* Add Mercury version 1.0.1
* Remove cci and bmi dependency requirements: these are not currently
  defined in Spack. If +bmi is enabled, the effect is that it may
  use a system install of bmi
* Add a note that fabtests is deprecated and has been folded into the
  libfabric package. Add the fabtests resource to the libfabric
  package
* Add CMake option settings to Mercury based on variant settings
* Mercury: Set OFI testing protocol depending on how libfabric was
  built
* Mercury: add version constraints to dependencies
2019-04-20 15:03:18 -07:00
Satish Balay
39855fbcf8 dealii: add patch for build with boost@1.70.0 (#11239)
Ref: https://github.com/dealii/dealii/issues/7934
2019-04-20 14:00:34 +02:00
Sajid Ali
4a2ec792a6 miniconda 2 and 3 packages: add version 4.6.14 (#11232) 2019-04-19 17:42:02 -07:00
Chris Green
3b34931f68 mysql: 5.7.X versions link boost (#11237)
Fixes #11226

MySQL 5.7.X and Boost 1.59.0 have a closer relationship than
MySQL >= 8.0 and their corresponding Boost versions: 5.7.X needs to
link against boost libraries which is indicated by marking boost as
a link dependency (removing the 'type' reverts to the default, which
includes link and build).
2019-04-19 15:34:55 -07:00
Oliver Breitwieser
56c233b0b7 jdk package: Fix fetching with curl 7.64.0+ (#11108)
Starting with version 7.64.0, curl skips cookies specified with "-H"
(generic custom header specification) when following redirects, which
causes the "accept-license"-cookie for jdk to disappear. The result
is that jdk fails to download. This uses the "-b" option (which is
used specifically for configuring cookies) instead, which is more
permissive.
2019-04-19 14:43:45 -07:00
Satish Balay
e86027d1f8
MUMPS: add version 5.2.0 (#11234) 2019-04-19 15:55:56 -05:00
Satish Balay
1746150f58
hypre: add @osborn9 to maintainers (#11233) 2019-04-19 15:55:35 -05:00
kustowski1
7ee9953dec added libsodium 1.0.16 and 1.0.17 (#11231) 2019-04-19 12:19:51 -07:00
Satish Balay
1eb01e7be5 petsc: fix suitesparse configure options. (#11188)
spec['dep'].libs.ld_flags can return system paths in some cases.
This is a targeted fix for the petsc package when retrieving
suite-sparse dependency libraries.
2019-04-19 11:44:05 -07:00
Massimiliano Culpo
3892b57244
hpx: overhaul of the package recipe (#11194)
* added latest versions + malloc variant
* added a variant to activate different instrumentations
* added a variant to activate or not networking
* added a variant to activate or not cuda and tools
* enforce c++ standard and make it consistent with boost
2019-04-19 16:58:46 +02:00
Harsh Bhatia
3f50dcf6d9 memsurfer: add new package 2019-04-18 19:31:08 -07:00
Harsh Bhatia
1842f9fbd5 vtk: add version 8.1.2 2019-04-18 19:31:08 -07:00
Harsh Bhatia
81f7238743 cgal: add version 4.13 2019-04-18 19:31:08 -07:00
Nichols A. Romero
eb7c79720d QMCPACK CMake fix (#11212)
* cflags and cxxflags from packages.yaml need to be passed into QMCPACK's CMake explictly for now.

* You need the ifcore library from the Intel compler to be manually linked in when you linked against a LAPACK provider that is not MKL.
2019-04-18 20:00:24 +02:00
Daniel Topa
c7725e9ff8 Add Open MPI v3.0.4 (#11221)
tarball posted 2019-04-15
https://www.open-mpi.org/software/ompi/v3.0/

dantopa@cn209:openmpi-3.0.4-5ienfvwpcxky3nz5jt3rygxzxzltkwm4 $ cd lib/

dantopa@cn209:lib $ ls -alh
total 27M
...
lrwxrwxrwx 1 dantopa dantopa   16 Apr 17 10:01 libmpi.so -> libmpi.so.40.0.5

confirmation builds Darwin (LANL):

x86_64
-- linux-centos7-x86_64 / gcc@4.8.5 -----------------------------
5ienfvw    openmpi@3.0.4%gcc
bkkhvej        ^hwloc@1.11.11%gcc
5chyfxo            ^libpciaccess@0.13.5%gcc
bcnjbc3            ^libxml2@2.9.8%gcc
tt2hkol            ^numactl@2.0.12%gcc
64vg6e4        ^zlib@1.2.11%gcc

ARM
-- linux-rhel7-aarch64 / gcc@4.8.5 ------------------------------
cq2y6b3    openmpi@3.0.4%gcc
7gqvelc        ^hwloc@1.11.11%gcc
6a4he35            ^libpciaccess@0.13.5%gcc
6a5uzd6            ^libxml2@2.9.8%gcc
m5neuus            ^numactl@2.0.12%gcc
67s2oqn        ^zlib@1.2.11%gcc

Power9
-- linux-rhel7-ppc64le / gcc@4.8.5 ------------------------------
otirvfn    openmpi@3.0.4%gcc
r6cylpu        ^hwloc@1.11.11%gcc
uzm3xdv            ^libpciaccess@0.13.5%gcc
trik6hj            ^libxml2@2.9.8%gcc
pmgndwh            ^numactl@2.0.12%gcc
4v3ticy        ^zlib@1.2.11%gcc

2019-04-18

Signed-off-by: Daniel Topa <dantopa@lanl.gov>
2019-04-18 12:33:26 -05:00
Federico Ficarelli
e64ee7e1be Prevent building llvm@8: with an incompatilble gcc (#11220) 2019-04-18 16:58:41 +02:00
Satish Balay
4571a96a43
xsdk: add/update maintainers to xsdk packages (#11146)
pumi
  slepc
  plasma
  magma
  trilinos
  alquimia
  pflotran
  strumpack
  tasmanian
  amrex
  hypre
  omega-h
  superlu-dist
2019-04-18 08:20:22 -05:00
Stephen Herbein
1dc3744d2c new package: kitty terminal (#9621) 2019-04-18 08:53:52 +02:00
Greg Becker
f242f5f8a9 Features: Improve Spec format strings (#10556)
* Update spec format to simpler syntax, maintain backwards compatibility
* Switch to new spec.format method throughout internals
* update package files for new format strings
* documentation and minor code cleanup. removed nonsensical variant sigils
2019-04-17 18:21:40 -07:00
Veselin Dobrev
49334f006d [WIP] CEED 2.0 (#10903)
* Initial commit for v2.0 of the CEED software suite.

* Update Nek packages and gslib

* Help spack concretize the hypre version for ceed-2.0.

* Fix nekcem install error

* Add support for gfortran v8 in nek5000 and nekcem.

* Split Nek5000 into Nek5000 and Nektools

* Get Nektools to build fine in Theta

* Fix travis failure: remove unused 'import numbers' from nek5000.

* Check for gfortran if it is wrapped

* Tweak the detection of gfortran in nek5000.

* Fix Nek packages to add -std=legacy when FC=gcc

* spack install ceed~petsc works fine on Theta

* Fix flake8 errors

* Fix more flake8 tests

* Fix an import issue

* Tweak the suite-sparse package to avoid interaction with existing system
installations of suite-sparse.

* petsc: update superlu-dist dependency

* Updates in the packages: occa, libceed, and ceed.

* In the libceed package, explicitly tell nvcc which host compiler to use.

* Fix python formatting.

* Simplify the test for gfortran in nek* packages.

* ceed: 2.0 uses petsc@3.11.0

* hpgmg-0.4; use from ceed@2.0.0

* Update the hypre dependency for ceed 2.0.

* Disable the superlu-dist dependency (through hypre) when using a
+quickbuild of ceed 2.0.

* petsc-3.11.0: add xlf fix

* nekcem: has a build dependency on Python 2.7+

* hpgmg: better setting of compiler options and use python for configure

* libceed: use v0.4 tag

* libceed: fix 0.4 release oops (pkgconfig version)

* Add a patch for magma-2.5.0 that brings it up the current 'master'.

* In the mfem package, install the examples, miniapps, and data under
$prefix/share/mfem.

* In the magma package, apply a patch to v2.5.0 that disables
magma_sparse - for testing purposes.

* In the magma package, link the 'magma' library with the
'nvToolsExt' library.

* In the magma package, update the 'magma-2.5.0.patch' with the latest
commits from the magma source repository. Also, remove the library
'nvToolsExt' from the 'magma-2.5.0-cmake.patch' - now it is not
needed.

* In the magma package, disable OpenMP when using v2.5.0 with the
IBM XL compiler.

 Please enter the commit message for your changes. Lines starting

* In the mfem package, add version for the 'laghos-v2.0' tag; also,
prefix the versions `laghos-v*` with their respective development
version numbers -- this way they are properly ordered within spack
relative to the official numbered versions.

* petsc: add version 3.11.1 (#11179)


(cherry picked from commit 1eab6e3c86)

* ceed-2.0: use petsc-3.11.1

* this-is-so-dumb.f -> empty.f
2019-04-17 17:37:41 -07:00
Elsa Gonsiorowski, PhD
a26aec520b mpifileutils v0.9.1 (#11216)
* mpifileutils v0.9.1

* mpifileutils v0.9.1 for realz
2019-04-17 18:11:14 -05:00
Michael Kuhn
b61dd57fdc sublime-text: Miscellaneous improvements (#11154)
- Add 3.2.1
- Reformat versions to include proper upstream version tags
- Add gtk dependency
- Add prefix to PATH so sublime_text can be found
2019-04-17 13:44:34 -07:00
Oliver Breitwieser
f276b3ffa0 ruby: Install certificate for +openssl only (#11184)
If specifying ~openssl, the post-install step will still try to install
the non-existent certificate, leading to an IOError.
2019-04-17 13:03:58 -05:00
Christoph Junghans
c628ca99cf gromacs: added 2019 patch releases (#11211) 2019-04-17 12:48:06 -05:00
Satish Balay
4731041f88
strumpack@3.1.1: add patch for Intel-19 build failure on cori (#11204)
Ref: https://github.com/spack/spack/issues/11202
2019-04-17 12:10:05 -05:00
Justin S
01ada1a3de astral: add 5.6.1 (#11195) 2019-04-17 09:32:50 -05:00
sknigh
e372464611 Add llvm 8.0.0 (#11197) 2019-04-17 09:31:42 -05:00
Michael Kuhn
ea2a85dbd3 lz4: Add 1.9.0 (#11207) 2019-04-17 09:30:23 -05:00
Michael Kuhn
3028f5674c zstd: Add 1.4.0 (#11208) 2019-04-17 09:29:52 -05:00
sknigh
308805cd54 Added rust 1.34.0 (#11200) 2019-04-16 18:32:11 -05:00
sknigh
a287ad6edd Added openmpi 3.1.4 (#11201)
* Added openmpi 3.1.4

* fix suffix comment
2019-04-16 18:31:54 -05:00
Matthias Mayr
e07cf4d661 New package: CLN library (#11167) 2019-04-16 16:03:51 -07:00
Frédéric Simonis
2ef7287a3b precice package: add versions and dependencies (#11176)
* Add versions 1.4.0, 1.3.0, and 1.2.0
* Add dependencies and update constraints (e.g. version 1.4.0 of
  precice requires a later version of boost)
* Add maintainers
2019-04-16 12:38:08 -07:00
Nichols A. Romero
9a79a2345d QMCPACK package: Remove Spack MKL hack for older version (#11127)
A Spack hack for MKL usage was needed in QMCPACK prior to version 3.5
when non-Intel compilers were used. This Spack hack could have
undesirable side-effects and led to ugly code that was extra work to
maintain. For older versions of QMCPACK, we throw a conflict if you
want to use Intel MKL with the other compilers commonly found on x86.

Note that there is no impact to version of QMCPACK since 3.5.
2019-04-16 12:04:40 -07:00
Satish Balay
c25d162b3c
superlu-dist: fix issue with adding system blas/lapack - when MKL is explicitly specified (#11187)
Version 6 added dependency on LAPACK - so additional -DTPL_LAPACK_LIBRARIES option is required

Ref: https://github.com/xiaoyeli/superlu_dist/issues/36
Ref: https://github.com/spack/spack/issues/10173
2019-04-16 08:52:48 -05:00
Jordan Ogas
a49de9eb09 add charliecloud 0.9.9 (#11190) 2019-04-15 17:59:10 -05:00
Matthias Diener
dd97cf9315 cmake: add version 3.14.2 (#11192) 2019-04-15 17:17:24 -05:00
Denis Davydov
06a17ef052 pixman: fix patch (#11173) 2019-04-15 14:49:02 +02:00
Denis Davydov
0341e19540 boost: add 1.70.0 (#11183) 2019-04-15 09:59:04 +02:00
Oliver Breitwieser
dadbd723a3 verilator: Fix FlexLexer.h not found (#11185)
Similar to #10956 flex needs to be a link-dependency for verilator in
order for FlexLexer.h to be found during install.
2019-04-15 09:56:07 +02:00
Satish Balay
5b5e00aaa9 petsc4py: add verson 3.11.0 (#11186)
Also added maintainers
2019-04-15 09:54:40 +02:00
Mark C. Miller
1ae7477d20 Update FASTMath metapackage (#11171)
* Limit to FASTMath-only packages
* Replace boxlib with amrex

As requested by @asalmgren
2019-04-12 16:54:19 -05:00
Satish Balay
832a1ddbaa
petsc: add fftw variant (#11178) 2019-04-12 09:46:23 -05:00
Satish Balay
1eab6e3c86
petsc: add version 3.11.1 (#11179) 2019-04-12 09:45:43 -05:00
Owen Solberg
227f9c9026 py-deeptools: adding release 3.2.1 sha256 sum (#11174) 2019-04-12 09:45:04 +02:00