Commit graph

22673 commits

Author SHA1 Message Date
Peter Scheibel
accd6dd228
boost @1.76: set toolset for intel b2 invocation (#25722)
and simplify constraint and add explanatory comment
2021-09-05 13:34:10 +02:00
bernhardkaindl
0ad54e0679
New package: py-anytree (#25718)
It is required for running all tests of gtk-doc.
2021-09-03 14:14:38 -07:00
Asher Mancinelli
bbc9d7d965
HiOp package: update magma dependency (#25721) 2021-09-03 14:05:45 -07:00
bernhardkaindl
6f5ec73087
m4: fix glitch in the test suite (#25702) 2021-09-03 15:04:59 -06:00
Desmond Orton
0aedafda19
New package: getOrganelle@1.7.5.0 (#25725) 2021-09-03 14:04:24 -07:00
Jose E. Roman
ac3ccad1e2
SLEPc package: add gpu variants (#25760) 2021-09-03 14:01:42 -07:00
Cyrus Harrison
5180b0b454
apcomp package: add versions 0.0.3 and 0.0.2 (#25767) 2021-09-03 14:00:17 -07:00
pmargara
432f577a0c
RELION package: add versions 3.1.3 and 3.1.2 (#25772) 2021-09-03 13:58:39 -07:00
Paul Spencer
f6060c9894
Mathematica package: add version 12.2.0 (#25791) 2021-09-03 13:41:39 -07:00
Harmen Stoppels
c6c9213766
rocblas: use AMDGPU_TARGETS instead of Tensile_ARCHITECTURE (#25778) 2021-09-03 18:19:57 +02:00
Harmen Stoppels
64407e253c Always disable leftover active environment after tests 2021-09-03 07:27:19 -07:00
Harmen Stoppels
de492e73d5 Don't error when removing scope that does not exist 2021-09-03 07:27:19 -07:00
Sreenivasa Murthy Kolam
29d344e4c7
update version for rocm-4.3.1 release (#25766) 2021-09-03 15:25:31 +02:00
bernhardkaindl
95586335f7
openssh: add v8.7 (#25774) 2021-09-03 06:22:40 -06:00
Weiqun Zhang
f56f4677cf
amrex: 21.09 (#25739) 2021-09-03 03:34:56 -06:00
Desmond Orton
043f0cd014
py-ansi2html: new package (#25741) 2021-09-03 11:25:52 +02:00
Desmond Orton
9841d1f571
py-cryolobm: add new package (#25748) 2021-09-03 11:25:06 +02:00
Desmond Orton
d61439c26a
py-lineenhancer: add new package (#25743) 2021-09-03 10:59:06 +02:00
Desmond Orton
0b9baf9ae3
py-terminaltables: add new package (#25738) 2021-09-03 10:58:18 +02:00
Axel Huebl
2331148f4b
WarpX: 21.09 (#25771)
Add the latest WarpX release.
2021-09-03 10:53:29 +02:00
Stephen Hudson
ffec74c359
libensemble: add tasmanian as optional dependency (#25762) 2021-09-03 10:30:08 +02:00
Desmond Orton
f162dd4f5b
py-gooey: new package (#25763) 2021-09-03 10:24:31 +02:00
Desmond Orton
8149048a78
py-colorclass: add new package (#25747) 2021-09-03 10:17:33 +02:00
Desmond Orton
2b7a2f66b7
py-mrcfile: add new package (#25742) 2021-09-03 10:16:38 +02:00
Desmond Orton
551766e3c6
py-pathtools: add new package (#25749) 2021-09-03 09:23:01 +02:00
Olivier Cessenat
35fe188d22
silo: add build dependency on m4 (#25770) 2021-09-03 08:54:31 +02:00
jacorvar
5f4fcea79c
Correct typo in r-assertive-data-uk (#25754)
`r-assertive-base` version contains a dot instead of a hyphen.
2021-09-02 18:10:56 -05:00
Tamara Dahlgren
487edcc416
mfem: Update stand-alone test to use test stage directory (#25744) 2021-09-02 14:52:56 -07:00
Gianluca Ficarelli
f71d93fc55
py-submitit: add new package (#25699) 2021-09-02 07:58:02 -05:00
Gilles Gouaillardet
2d78045cdd
gromacs: add v2021.3 (#25750) 2021-09-02 12:18:05 +02:00
Vanessasaurus
8e61f54260
start of work to add spack audit packages-https checker (#25670)
This PR will add a new audit, specifically for spack package homepage urls (and eventually
other kinds I suspect) to see if there is an http address that can be changed to https.

Usage is as follows:

```bash
$ spack audit packages-https <package>
```
And in list view:

```bash
$ spack audit list
generic:
  Generic checks relying on global variables

configs:
  Sanity checks on compilers.yaml
  Sanity checks on packages.yaml

packages:
  Sanity checks on specs used in directives

packages-https:
  Sanity checks on https checks of package urls, etc.
```

I think it would be unwise to include with packages, because when run for all, since we do requests it takes a long time. I also like the idea of more well scoped checks - likely there will be other addresses for http/https within a package that we eventually check. For now, there are two error cases - one is when an https url is tried but there is some SSL error (or other error that means we cannot update to https):

```bash
$ spack audit packages-https zoltan
PKG-HTTPS-DIRECTIVES: 1 issue found
1. Error with attempting https for "zoltan": 
    <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: Hostname mismatch, certificate is not valid for 'www.cs.sandia.gov'. (_ssl.c:1125)>
```
This is either not fixable, or could be fixed with a change to the url or (better) contacting the site owners to ask about some certificate or similar.

The second case is when there is an http that needs to be https, which is a huge issue now, but hopefully not after this spack PR.

```bash
$ spack audit packages-https xman
Package "xman" uses http but has a valid https endpoint.
```

And then when a package is fixed:

```bash
$ spack audit packages-https zlib
PKG-HTTPS-DIRECTIVES: 0 issues found.
```
And that's mostly it. :)

Signed-off-by: vsoch <vsoch@users.noreply.github.com>

Co-authored-by: vsoch <vsoch@users.noreply.github.com>
2021-09-02 08:46:27 +02:00
Cody Balos
8a7af82a82
py-adios: add new version (#25746) 2021-09-01 23:19:45 -07:00
Harmen Stoppels
0c61b31922
Bump nlohman-json and fix cmake args (#25504)
* Bump nlohman-json and fix cmake args

* Rename variant
2021-09-01 18:28:11 -07:00
David Beckingsale
156edffec2
Update versions for RAJA, CHAI, Umpire and camp (#25528) 2021-09-01 17:58:47 -07:00
eugeneswalker
6d484a055a
py-jupyterhub: add version: 1.4.1 (#24890)
* py-jupyterhub: add version: 1.4.1

* dont need mako for latest release

* sort dependencies

* notebook isnt used for 1.4.1+

* add dependency on py-jupyter-telemetry; create new package py-jupyter-telemetry

* py-jupyter-telemetry: declare missing dependencies

* py-jupyterhub: need more specific depends_on before less specific

* add py-json-logger; py-jupyter-telemetry: add depends_on for py-json-logger

* Update var/spack/repos/builtin/packages/py-jupyter-telemetry/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* remove py-json-logger erroneously and duplicatively added

* Update var/spack/repos/builtin/packages/py-jupyterhub/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* need py-alembic@1.4: for newest py-jupyterhub

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-09-01 22:58:24 +00:00
Harmen Stoppels
03331de0f2
bugfix: R packages can be concretized together with clingo again (#25730) 2021-09-01 14:12:55 -07:00
David Beckingsale
aabece46ba
Add variant to allow unsupported compiler & CUDA combinations (#19736)
Sometimes users need to be able to override the conflicts in `CudaPacakge`.  This introduces a variant to enable/disable them.
2021-09-01 11:34:20 -07:00
Harmen Stoppels
4c23059017
Speed-up two unit tests by using builtin.mock instead of builtin (#25544) 2021-09-01 11:58:29 +02:00
Nisarg Patel
ab37ac95bf
Adding new versions of redis (#25714) 2021-09-01 11:39:39 +02:00
Harmen Stoppels
2411a9599e
nghttp2: add v1.44.0, fix build (#25605) 2021-09-01 11:33:31 +02:00
Peter Scheibel
b0ee7deaa7
allow building silo+mpi ^hdf5~mpi (#25724) 2021-09-01 09:43:57 +02:00
Richarda Butler
7adacf967d
Legion: Add E4S testsuite stand alone test (#25285)
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2021-08-31 16:57:55 -07:00
Richarda Butler
2633cf7da6
Papyrus: Add E4S testsuite stand alone test (#25324) 2021-08-31 15:56:20 -07:00
Hadrien G
3c6050d3a2
acts: add v12.0.0, v12.0.1 (#25697) 2021-08-31 16:44:01 +02:00
Scott Wittenburg
b34f289796
Pipelines: disable power builds (#25704) 2021-08-30 17:19:42 -07:00
Jen Herting
beb3524392
[py-plotly] added version 5.2.2 (#25668)
* [py-plotly] added version 5.2.2

* [py-plotly] flake8

* [py-plotly] requests not required for new version
2021-08-30 16:15:49 -05:00
Adam J. Stewart
8ee5bf6d03
py-pythran: update checksum for patch (#25693)
* Replace URL patch with file patch
* Add comment explaining patch origin and purpose
2021-08-30 10:02:39 -07:00
psakievich
a018f48df9
Updates to Exawind packages (#25568) 2021-08-30 09:22:55 -06:00
lorddavidiii
e51463f587
asciidoc-py3: add v9.1.0, v9.0.5 and v9.0.4 (#25562) 2021-08-30 08:32:03 -06:00
Piotr Luszczek
378543b554
plasma: add version 21.8.29, migrate url (#25688) 2021-08-30 07:46:46 -06:00